List of all 20,073 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Sideromenos, Spyros et al. (2022) The metabolic regulator USF-1 is involved in the control of affective behaviour in mice.; Transl Psychiatry, 12: 497 |
|
GSE204675 |
| Sidhaye, Jaydeep et al. (2023) Integrated transcriptome and proteome analysis reveals posttranscriptional regulation of ribosomal genes in human brain organoids.; Elife, 12: [no pages] |
|
GSE214654 |
| Sidrauski, Carmela et al. (2015) The small molecule ISRIB reverses the effects of eIF2? phosphorylation on translation and stress granule assembly.; Elife, 4: [no pages] |
|
GSE65778 |
| Siebert, Justin R et al. (2010) Intrinsic response of thoracic propriospinal neurons to axotomy.; BMC Neurosci, 11: 69 |
|
GSE20907 |
| Siegers, Jurre Y et al. (2020) A High-Fat Diet Increases Influenza A Virus-Associated Cardiovascular Damage.; J Infect Dis, 222: 820-831 |
|
GSE134685 |
| Siegert, Sandra et al. (2012) Transcriptional code and disease map for adult retinal cell types.; Nat Neurosci, 15: 487-95, S1-2 |
|
GSE33076 GSE33085 |
| Siepka, Sandra M et al. (2007) Circadian mutant Overtime reveals F-box protein FBXL3 regulation of cryptochrome and period gene expression.; Cell, 129: 1011-23 |
|
GSE3746 GSE3748 |
| Sierksma, Annerieke et al. (2020) Novel Alzheimer risk genes determine the microglia response to amyloid-? but not to TAU pathology.; EMBO Mol Med, 12: e10606 |
|
GSE110741 |
| Sigmarsdottir, Thora Bjorg et al. (2021) Metabolic and Transcriptional Changes across Osteogenic Differentiation of Mesenchymal Stromal Cells.; Bioengineering (Basel), 8: [no pages] |
|
GSE191136 |
| Sikk, Katrin et al. (2011) Peripheral blood RNA expression profiling in illicit methcathinone users reveals effect on immune system.; Front Genet, 2: 42 |
|
GSE28686 |
| Silagi, Elizabeth S et al. (2018) Bicarbonate Recycling by HIF-1-Dependent Carbonic Anhydrase Isoforms 9 and 12 Is Critical in Maintaining Intracellular pH and Viability of Nucleus Pulposus Cells.; J Bone Miner Res, 33: 338-355 |
|
GSE42611 |
| Silberman, Dafne M et al. (2014) SIRT6 is required for normal retinal function.; PLoS One, 9: e98831 |
|
GSE56563 |
| Silbiger, Vivian N et al. (2013) Novel genes detected by transcriptional profiling from whole-blood cells in patients with early onset of acute coronary syndrome.; Clin Chim Acta, 421: 184-90 |
|
GSE29532 |
| Silk, Ryan P et al. (2024) Mapping the daily rhythmic transcriptome in the diabetic retina.; Vision Res, 214: 108339 |
|
GSE233440 |
| Silva, Carla G et al. (2018) Cell-Intrinsic Control of Interneuron Migration Drives Cortical Morphogenesis.; Cell, 172: 1063-1078.e19 |
|
GSE104090 |
| Silva, Constanza P et al. (2018) The influence of adolescent nicotine exposure on ethanol intake and brain gene expression.; PLoS One, 13: e0198935 |
|
GSE115188 |
| Silva, Eliezer et al. (2007) HMGB1 and LPS induce distinct patterns of gene expression and activation in neutrophils from patients with sepsis-induced acute lung injury.; Intensive Care Med, 33: 1829-39 |
|
GSE3037 |
| Silva, Fernando P G et al. (2009) Gene expression profiling of minimally differentiated acute myeloid leukemia: M0 is a distinct entity subdivided by RUNX1 mutation status.; Blood, 114: 3001-7 |
|
GSE17061 |
| Silva, Mariline M et al. (2019) MicroRNA-186-5p controls GluA2 surface expression and synaptic scaling in hippocampal neurons.; Proc Natl Acad Sci U S A, 116: 5727-5736 |
|
GSE111384 |
| Silva-Vargas, Violeta et al. (2016) Age-Dependent Niche Signals from the Choroid Plexus Regulate Adult Neural Stem Cells.; Cell Stem Cell, 19: 643-652 |
|
GSE82308 |
| Silveira, Sara Martoreli et al. (2013) Genomic signatures predict poor outcome in undifferentiated pleomorphic sarcomas and leiomyosarcomas.; PLoS One, 8: e67643 |
|
GSE49941 |
| Silver, Daniel P et al. (2010) Efficacy of neoadjuvant Cisplatin in triple-negative breast cancer.; J Clin Oncol, 28: 1145-53 |
|
GSE18864 |
| Silver, Debra L et al. (2010) The exon junction complex component Magoh controls brain size by regulating neural stem cell division.; Nat Neurosci, 13: 551-8 |
|
GSE19168 |
| Silverman, Ian M et al. (2015) Transcriptome-wide ribonuclease-mediated protein footprinting to identify RNA-protein interaction sites.; Methods, 72: 76-85 |
|
GSE57881 |
| Sim, Fraser J et al. (2006) Complementary patterns of gene expression by human oligodendrocyte progenitors and their environment predict determinants of progenitor maintenance and differentiation.; Ann Neurol, 59: 763-79 |
|
GSE26535 |
| Sim, Fraser J et al. (2009) Fate determination of adult human glial progenitor cells.; Neuron Glia Biol, 5: 45-55 |
|
GSE36634 |
| Sim, Fraser J et al. (2011) CD140a identifies a population of highly myelinogenic, migration-competent and efficiently engrafting human oligodendrocyte progenitor cells.; Nat Biotechnol, 29: 934-41 |
|
GSE29368 |
| Simandi, Zoltan et al. (2015) PRMT1 and PRMT8 regulate retinoic acid-dependent neuronal differentiation with implications to neuropathology.; Stem Cells, 33: 726-41 |
|
GSE47214 GSE37060 |
| Simandi, Zoltan et al. (2017) RXR heterodimers orchestrate transcriptional control of neurogenesis and cell fate specification.; Mol Cell Endocrinol, [no vol.]: [no pages] |
|
GSE101591 |
| Simchovitz, Alon et al. (2020) A lncRNA survey finds increases in neuroprotective LINC-PINT in Parkinson's disease substantia nigra.; Aging Cell, 19: e13115 |
|
GSE114517 |
| Simeoli, Raffaele et al. (2017) Exosomal cargo including microRNA regulates sensory neuron to macrophage communication after nerve trauma.; Nat Commun, 8: 1778 |
|
GSE104270 |
| Simeoni, Fabrizio et al. (2021) Enhancer recruitment of transcription repressors RUNX1 and TLE3 by mis-expressed FOXC1 blocks differentiation in acute myeloid leukemia.; Cell Rep, 36: 109725 |
|
GSE159690 |
| Simmini, Salvatore et al. (2014) Transformation of intestinal stem cells into gastric stem cells on loss of transcription factor Cdx2.; Nat Commun, 5: 5728 |
|
GSE62784 |
| Simmons, Katrina M et al. (2015) Gene Signatures of 1,25-Dihydroxyvitamin D3 Exposure in Normal and Transformed Mammary Cells.; J Cell Biochem, 116: 1693-711 |
|
GSE27220 |
| Simon, Christian M et al. (2017) Converging Mechanisms of p53 Activation Drive Motor Neuron Degeneration in Spinal Muscular Atrophy.; Cell Rep, 21: 3767-3780 |
|
GSE81245 |
| Simonett, Shane P et al. (2021) Identification of direct transcriptional targets of NFATC2 that promote β cell proliferation.; J Clin Invest, 131: [no pages] |
|
GSE158498 |
| Simoni, Matilde et al. (2024) PML restrains p53 activity and cellular senescence in clear cell renal cell carcinoma.; EMBO Mol Med, 16: 1324-1351 |
|
GSE246846 |
| Simpson, Eric L et al. (2019) A Phase 2 Randomized Trial of Apremilast in Patients with Atopic Dermatitis.; J Invest Dermatol, 139: 1063-1072 |
|
GSE120899 |
| Simpson, Julie E et al. (2011) Microarray analysis of the astrocyte transcriptome in the aging brain: relationship to Alzheimer's pathology and APOE genotype.; Neurobiol Aging, 32: 1795-807 |
|
GSE29652 |
| Simpson, Julie E et al. (2016) Neuronal DNA damage response-associated dysregulation of signalling pathways and cholesterol metabolism at the earliest stages of Alzheimer-type pathology.; Neuropathol Appl Neurobiol, 42: 167-79 |
|
GSE66333 |
| Sims, A H et al. (2012) Defining the molecular response to trastuzumab, pertuzumab and combination therapy in ovarian cancer.; Br J Cancer, [no vol.]: [no pages] |
|
GSE31432 |
| Sims, Amy C et al. (2013) Release of severe acute respiratory syndrome coronavirus nuclear import block enhances host transcription in human lung cells.; J Virol, 87: 3885-902 |
|
GSE33267 |
| Sims, Emily K et al. (2013) Divergent compensatory responses to high-fat diet between C57BL6/J and C57BLKS/J inbred mouse strains.; Am J Physiol Endocrinol Metab, 305: E1495-511 |
|
GSE51055 |
| Simão, Daniel et al. (2018) Recapitulation of Human Neural Microenvironment Signatures in iPSC-Derived NPC 3D Differentiation.; Stem Cell Reports, 11: 552-564 |
|
GSE102139 |
| Simón-Carrasco, Lucía et al. (2017) Inactivation of Capicua in adult mice causes T-cell lymphoblastic lymphoma.; Genes Dev, 31: 1456-1468 |
|
GSE89952 |
| Sin, Yooksil et al. (2018) Generation of splice switching oligonucleotides targeting the Cockayne syndrome group B gene product in order to change the diseased cell state.; Biochem Biophys Res Commun, 500: 163-169 |
|
GSE111989 |
| Sincennes, Marie-Claude et al. (2021) Acetylation of PAX7 controls muscle stem cell self-renewal and differentiation potential in mice.; Nat Commun, 12: 3253 |
|
GSE167532 |
| Singec, Ilyas et al. (2016) Quantitative Analysis of Human Pluripotency and Neural Specification by In-Depth (Phospho)Proteomic Profiling.; Stem Cell Reports, 7: 527-542 |
|
GSE39876 |
| Singer, Christian F et al. (2013) Response prediction to neoadjuvant chemotherapy: comparison between pre-therapeutic gene expression profiles and in vitro chemosensitivity assay.; PLoS One, 8: e66573 |
|
GSE29561 |
| Singer, E et al. (2015) Reactive oxygen species-mediated therapeutic response and resistance in glioblastoma.; Cell Death Dis, 6: e1601 |
|
GSE57978 |
| Singer, Ruth A et al. (2019) The Long Noncoding RNA Paupar Modulates PAX6 Regulatory Activities to Promote Alpha Cell Development and Function.; Cell Metab, 30: 1091-1106.e8 |
|
GSE121884 GSE132072 GSE122033.2 |
| Singer, Ruth A et al. (2025) Opto-CLIP reveals dynamic FMRP regulation of mRNAs upon CA1 neuronal activation.; bioRxiv, [no vol.]: [no pages] |
|
GSE286381 |
| Singh, Abhishek K et al. (2025) Metabolic adaptation of regenerative hematopoiesis depends on docking-independent mitochondrial connexin 43.; Blood, 146: 2306-2321 |
|
GSE305764 |
| Singh, Akash K et al. (2022) Glucose derived carbon nanosphere (CSP) conjugated TTK21, an activator of the histone acetyltransferases CBP/p300, ameliorates amyloid-beta 1-42 induced deficits in plasticity and associativity in hippocampal CA1 pyramidal neurons.; Aging Cell, 21: e13675 |
|
GSE206799 |
| Singh, Amar M et al. (2013) Cell-cycle control of developmentally regulated transcription factors accounts for heterogeneity in human pluripotent cells.; Stem Cell Reports, 1: 532-44 |
|
GSE53481 |
| Singh, Amrit et al. (2013) Gene-metabolite expression in blood can discriminate allergen-induced isolated early from dual asthmatic responses.; PLoS One, 8: e67907 |
|
GSE40240 |
| Singh, Anju et al. (2013) Transcription factor NRF2 regulates miR-1 and miR-206 to drive tumorigenesis.; J Clin Invest, 123: 2921-34 |
|
GSE38332 |
| Singh, Ankita et al. (2024) A Murine Model of Post-acute Neurological Sequelae Following SARS-CoV-2 Variant Infection.; bioRxiv, [no vol.]: [no pages] |
|
GSE260625 |
| Singh, Brijesh K et al. (2016) Hepatic FOXO1 Target Genes Are Co-regulated by Thyroid Hormone via RICTOR Protein Deacetylation and MTORC2-AKT Protein Inhibition.; J Biol Chem, 291: 198-214 |
|
GSE68803 |
| Singh, Charandeep (2023) Systems levels analysis of lipid metabolism in oxygen-induced retinopathy.; bioRxiv, [no vol.]: [no pages] |
|
GSE281855 |
| Singh, Dave et al. (2011) Induced sputum genes associated with spirometric and radiological disease severity in COPD ex-smokers.; Thorax, 66: 489-95 |
|
GSE22148 |
| Singh, Dave et al. (2014) Altered gene expression in blood and sputum in COPD frequent exacerbators in the ECLIPSE cohort.; PLoS One, 9: e107381 |
|
GSE54837 |
| Singh, Dinesh et al. (2002) Gene expression correlates of clinical prostate cancer behavior.; Cancer Cell, 1: 203-9 |
|
singh-prostate |
| Singh, G et al. (2022) Altered genome-wide hippocampal gene expression profiles following early life lead exposure and their potential for reversal by environmental enrichment.; Sci Rep, 12: 11937 |
|
GSE180354 |
| Singh, Gurdeep et al. (2022) Histone macroH2A1 is a stronger regulator of hippocampal transcription and memory than macroH2A2 in mice.; Commun Biol, 5: 482 |
|
GSE147445 |
| Singh, M K et al. (2007) Gene expression changes in peripheral blood mononuclear cells from multiple sclerosis patients undergoing beta-interferon therapy.; J Neurol Sci, 258: 52-9 |
|
GSE5574 |
| Singh, Mohini et al. (2018) Therapeutic Targeting of the Premetastatic Stage in Human Lung-to-Brain Metastasis.; Cancer Res, 78: 5124-5134 |
|
GSE110495 |
| Singh, Neetu et al. (2018) Differential genomics and transcriptomics between tyrosine kinase inhibitor-sensitive and -resistant BCR-ABL-dependent chronic myeloid leukemia.; Oncotarget, 9: 30385-30418 |
|
GSE77191 |
| Singh, Priyam et al. (2009) Global changes in processing of mRNA 3' untranslated regions characterize clinically distinct cancer subtypes.; Cancer Res, 69: 9422-30 |
|
GSE15808 |
| Singh, Ravi K et al. (2014) Rbfox2-coordinated alternative splicing of Mef2d and Rock2 controls myoblast fusion during myogenesis.; Mol Cell, 55: 592-603 |
|
GSE58928 |
| Singh, Ruchira et al. (2005) Microarray-based comparison of three amplification methods for nanogram amounts of total RNA.; Am J Physiol Cell Physiol, 288: C1179-89 |
|
GSE1435 |
| Singh, Shivendra et al. (2022) Targeting KDM4 for treating PAX3-FOXO1-driven alveolar rhabdomyosarcoma.; Sci Transl Med, 14: eabq2096 |
|
GSE158394 |
| Singh, Shivendra et al. (2023) The Oligostilbene Gnetin H Is a Novel Glycolysis Inhibitor That Regulates Thioredoxin Interacting Protein Expression and Synergizes with OXPHOS Inhibitor in Cancer Cells.; Int J Mol Sci, 24: [no pages] |
|
GSE224692 |
| Singh, Shivendra et al. (2024) RBM39 degrader invigorates natural killer cells to eradicate neuroblastoma despite cancer cell plasticity.; bioRxiv, [no vol.]: [no pages] |
|
GSE251918.2 |
| Singh, Siddharth et al. (2019) The cancer-associated, gain-of-function TP53 variant P152Lp53 activates multiple signaling pathways implicated in tumorigenesis.; J Biol Chem, 294: 14081-14095 |
|
GSE119654 |
| Singh, Sukhvinder et al. (2020) Signature genes associated with immunological non-responsiveness to anti-retroviral therapy in HIV-1 subtype-c infection.; PLoS One, 15: e0234270 |
|
GSE77939 |
| Singh, Sukhvinder et al. (2021) Integrative metabolomics and transcriptomics identifies itaconate as an adjunct therapy to treat ocular bacterial infection.; Cell Rep Med, 2: 100277 |
|
GSE168928 |
| Singh, Vikas Vikram et al. (2013) Decreased pattern recognition receptor signaling, interferon-signature, and bactericidal/permeability-increasing protein gene expression in cord blood of term low birth weight human newborns.; PLoS One, 8: e62845 |
|
GSE29807 |
| Singh, Vikash et al. (2023) Global role of IGF2BP1 in controlling the expression of Wnt/β-catenin-regulated genes in colorectal cancer cells.; Front Cell Dev Biol, 11: 1236356 |
|
GSE237688 GSE237687 |
| Singh, Yogesh et al. (2023) Overexpression of human alpha-Synuclein leads to dysregulated microbiome/metabolites with ageing in a rat model of Parkinson disease.; Mol Neurodegener, 18: 44 |
|
GSE236012 |
| Singhal, Amit et al. (2014) Metformin as adjunct antituberculosis therapy.; Sci Transl Med, 6: 263ra159 |
|
GSE51803 |
| Singhal, Hari et al. (2016) Genomic agonism and phenotypic antagonism between estrogen and progesterone receptors in breast cancer.; Sci Adv, 2: e1501924 |
|
GSE80365 GSE80366 |
| Singhal, Hari et al. (2018) Progesterone receptor isoforms, agonists and antagonists differentially reprogram estrogen signaling.; Oncotarget, 9: 4282-4300 |
|
GSE80619 GSE80358 GSE99626 |
| Singleton, Belinda K et al. (2008) Mutations in EKLF/KLF1 form the molecular basis of the rare blood group In(Lu) phenotype.; Blood, 112: 2081-8 |
|
GSE10584 |
| Singleton, Katherine R et al. (2017) Melanoma Therapeutic Strategies that Select against Resistance by Exploiting MYC-Driven Evolutionary Convergence.; Cell Rep, 21: 2796-2812 |
|
GSE99923 |
| Sinha Ray, Shrestha et al. (2022) Mechanisms of IRF2BPL-related disorders and identification of a potential therapeutic strategy.; Cell Rep, 41: 111751 |
|
GSE189909 |
| Sinha, Birandra K et al. (2022) Gene Expression Profiling Elucidates Cellular Responses to NCX4040 in Human Ovarian Tumor Cells: Implications in the Mechanisms of Action of NCX4040.; Cancers (Basel), 15: [no pages] |
|
GSE212017 |
| Sinha, Niladri K et al. (2020) EDF1 coordinates cellular responses to ribosome collisions.; Elife, 9: [no pages] |
|
GSE149565 |
| Sinha, Surajit et al. (2025) Expression of IMPACT curtails metabolic plasticity and augments NK cell killing to abrogate metastatic growth.; Cancer Discov, [no vol.]: [no pages] |
|
GSE303622 GSE303691 |
| Sinkkonen, Saku T et al. (2011) Intrinsic regenerative potential of murine cochlear supporting cells.; Sci Rep, 1: 26 |
|
GSE62582 |