List of all 21,870 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Rojo Arias, Jesús E et al. (2019) VEGF-Trap is a potent modulator of vasoregenerative responses and protects dopaminergic amacrine network integrity in degenerative ischemic neovascular retinopathy.; J Neurochem, [no vol.]: [no pages] |
|
GSE124956 |
| Rojo Arias, Jesús Eduardo et al. (2021) Gene expression profile of the murine ischemic retina and its response to Aflibercept (VEGF-Trap).; Sci Rep, 11: 15313 |
|
GSE137705 |
| Rojo Arias, Jesús Eduardo et al. (2022) VEGF-Trap Modulates Retinal Inflammation in the Murine Oxygen-Induced Retinopathy (OIR) Model.; Biomedicines, 10: [no pages] |
|
GSE150794 |
| Rojo, Daniel R et al. (2011) Influence of stochastic gene expression on the cell survival rheostat after traumatic brain injury.; PLoS One, 6: e23111 |
|
GSE16735 |
| Rojo, Daniela et al. (2023) BMAL1 loss in oligodendroglia contributes to abnormal myelination and sleep.; Neuron, 111: 3604-3618.e11 |
|
GSE239541 |
| Rojo, Rocío et al. (2019) Deletion of a Csf1r enhancer selectively impacts CSF1R expression and development of tissue macrophage populations.; Nat Commun, 10: 3215 |
|
GSE108207 |
| Rokicki, Mikołaj et al. (2024) Impact of Long-Term Cannabidiol (CBD) Treatment on Mouse Kidney Transcriptome.; Genes (Basel), 15: [no pages] |
|
GSE275998 |
| Rolland, Antoine D et al. (2011) Uncovering gene regulatory networks during mouse fetal germ cell development.; Biol Reprod, 84: 790-800 |
|
GSE23908 |
| Roller, Devin G et al. (2012) Synthetic lethal screening with small-molecule inhibitors provides a pathway to rational combination therapies for melanoma.; Mol Cancer Ther, 11: 2505-15 |
|
GSE39192 |
| Rolli, Jenelle et al. (2024) DNA aptamers that modulate biological activity of model neurons.; Mol Ther Nucleic Acids, 35: 102392 |
|
GSE278187 |
| Rom, Aviv et al. (2019) Regulation of CHD2 expression by the Chaserr long noncoding RNA gene is essential for viability.; Nat Commun, 10: 5092 |
|
GSE124375 |
| Romani, Chiara et al. (2023) Functional profiles of curatively treated adenoid cystic carcinoma unveil prognostic features and potentially targetable pathways.; Sci Rep, 13: 1809 |
|
GSE214969 |
| Romano, Lisa E L et al. (2022) Multi-omic profiling reveals the ataxia protein sacsin is required for integrin trafficking and synaptic organization.; Cell Rep, 41: 111580 |
|
GSE214213 |
| Romano, Lisa El et al. (2026) Metformin improves RAN protein pathology, alternative splicing, and behavioral phenotypes in SCA8 mice.; Life Sci Alliance, 9: [no pages] |
|
GSE319230 |
| Romanoski, Casey E et al. (2010) Systems genetics analysis of gene-by-environment interactions in human cells.; Am J Hum Genet, 86: 399-410 |
|
GSE20060 |
| Romanoski, Casey E et al. (2011) Network for activation of human endothelial cells by oxidized phospholipids: a critical role of heme oxygenase 1.; Circ Res, 109: e27-41 |
|
GSE30169 |
| Romer, Anthony I et al. (2019) Murine Perinatal Beta Cell Proliferation and the Differentiation of Human Stem Cell Derived Insulin Expressing Cells Require NEUROD1.; Diabetes, [no vol.]: [no pages] |
|
GSE122990 GSE122991 |
| Romero, Damian G et al. (2004) Angiotensin II early regulated genes in H295R human adrenocortical cells.; Physiol Genomics, 19: 106-16 |
|
GSE1030 |
| Romero, Johnathan et al. (2024) 25-hydroxycholesterol promotes brain cytokine production and leukocyte infiltration in a mouse model of lipopolysaccharide-induced neuroinflammation.; J Neuroinflammation, 21: 251 |
|
GSE250279 |
| Romero, July Carolina et al. (2025) Loss of CD98HC phosphorylation by ATM impairs antiporter trafficking and drives glutamate toxicity in Ataxia telangiectasia.; Nat Commun, 16: 5109 |
|
GSE140416 |
| Romero, Rodrigo et al. (2024) The neuroendocrine transition in prostate cancer is dynamic and dependent on ASCL1.; Nat Cancer, 5: 1641-1659 |
|
GSE246251 |
| Romero, Steven A et al. (2016) Evidence of a broad histamine footprint on the human exercise transcriptome.; J Physiol, 594: 5009-23 |
|
GSE71972 |
| Romero-Córdoba, Sandra L et al. (2020) MexicanGanoderma LucidumExtracts Decrease Lipogenesis Modulating Transcriptional Metabolic Networks and Gut Microbiota in C57BL/6 Mice Fed with a High-Cholesterol Diet.; Nutrients, 13: [no pages] |
|
GSE159656 |
| Romo-Vaquero, María et al. (2014) A rosemary extract enriched in carnosic acid improves circulating adipocytokines and modulates key metabolic sensors in lean Zucker rats: Critical and contrasting differences in the obese genotype.; Mol Nutr Food Res, 58: 942-53 |
|
GSE48373 |
| Rompala, Gregory et al. (2021) Maternal cannabis use is associated with suppression of immune gene networks in placenta and increased anxiety phenotypes in offspring.; Proc Natl Acad Sci U S A, 118: [no pages] |
|
GSE179930 |
| Rondeau, Gaelle et al. (2014) Effects of different tissue microenvironments on gene expression in breast cancer cells.; PLoS One, 9: e101160 |
|
GSE54626 |
| Rong, James X et al. (2011) Rosiglitazone Induces Mitochondrial Biogenesis in Differentiated Murine 3T3-L1 and C3H/10T1/2 Adipocytes.; PPAR Res, 2011: 179454 |
|
GSE14810 |
| Rong, Xiao et al. (2025) Sono-activable and biocatalytic 3D-printed scaffolds for intelligently sequential therapies in osteosarcoma eradication and defect regeneration.; Nat Commun, 16: 6150 |
|
GSE296989.2 |
| Rongvaux, Anthony et al. (2014) Apoptotic caspases prevent the induction of type I interferons by mitochondrial DNA.; Cell, 159: 1563-77 |
|
GSE63794 |
| Ronin, Emilie et al. (2021) Tissue-restricted control of established central nervous system autoimmunity by TNF receptor 2-expressing Treg cells.; Proc Natl Acad Sci U S A, 118: [no pages] |
|
GSE165821 |
| Ronis, Martin J J et al. (2013) Female mice lacking p47phox have altered adipose tissue gene expression and are protected against high fat-induced obesity.; Physiol Genomics, 45: 351-66 |
|
GSE41932 |
| Ronkainen, Paula H A et al. (2010) Global gene expression profiles in skeletal muscle of monozygotic female twins discordant for hormone replacement therapy.; Aging Cell, 9: 1098-110 |
|
GSE21421 |
| Rontani, Pauline et al. (2021) Impaired expression of the COSMOC/MOCOS gene unit in ASD patient stem cells.; Mol Psychiatry, 26: 1606-1618 |
|
GSE122434 |
| Roobrouck, Valerie D et al. (2011) Differentiation potential of human postnatal mesenchymal stem cells, mesoangioblasts, and multipotent adult progenitor cells reflected in their transcriptome and partially influenced by the culture conditions.; Stem Cells, 29: 871-82 |
|
GSE23131 |
| Rooney, John P et al. (2018) Identification of Androgen Receptor Modulators in a Prostate Cancer Cell Line Microarray Compendium.; Toxicol Sci, 166: 146-162 |
|
GSE109021 |
| Ros, S et al. (2017) 6-Phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 is essential for p53-null cancer cells.; Oncogene, 36: 3287-3299 |
|
GSE89110 |
| Rosa, Thabatta Leal Silveira Andrezo et al. (2022) The Type I Interferon Pathway Is Upregulated in the Cutaneous Lesions and Blood of Multibacillary Leprosy Patients With Erythema Nodosum Leprosum.; Front Med (Lausanne), 9: 899998 |
|
GSE198609 |
| Rosarda, Jessica D et al. (2021) Metabolically Activated Proteostasis Regulators Protect against Glutamate Toxicity by Activating NRF2.; ACS Chem Biol, 16: 2852-2863 |
|
GSE178964 |
| Rosas, Marcela et al. (2014) The transcription factor Gata6 links tissue macrophage phenotype and proliferative renewal.; Science, 344: 645-8 |
|
GSE28621 |
| Rosato, Pamela C et al. (2023) Tissue resident memory T cells trigger rapid exudation and local antibody accumulation.; Mucosal Immunol, [no vol.]: [no pages] |
|
GSE219002 |
| Rose, Amy E et al. (2011) Integrative genomics identifies molecular alterations that challenge the linear model of melanoma progression.; Cancer Res, 71: 2561-71 |
|
GSE22301 |
| Rose, Jesse P et al. (2025) FGF21 reverses MASH through coordinated actions on the CNS and liver.; Cell Metab, 37: 1515-1529.e6 |
|
GSE295343 |
| Rose, Michael et al. (2020) EGFR activity addiction facilitates anti-ERBB based combination treatment of squamous bladder cancer.; Oncogene, 39: 6856-6870 |
|
GSE146975 |
| Rose, Patricia et al. (2008) Genes overexpressed in cerebral arteries following salt-induced hypertensive disease are regulated by angiotensin II, JunB, and CREB.; Am J Physiol Heart Circ Physiol, 294: H1075-85 |
|
GSE5488 |
| Rosean, T R et al. (2015) The tumor microenvironment is the main source of IL-6 for plasma cell tumor development in mice.; Leukemia, 29: 233-7 |
|
GSE60282 |
| Rosebeck, Shaun et al. (2011) Cleavage of NIK by the API2-MALT1 fusion oncoprotein leads to noncanonical NF-kappaB activation.; Science, 331: 468-72 |
|
GSE25550 |
| Rosell, Anna et al. (2011) Brain perihematoma genomic profile following spontaneous human intracerebral hemorrhage.; PLoS One, 6: e16750 |
|
GSE24265 |
| Rosen, Ezra Y et al. (2011) Functional genomic analyses identify pathways dysregulated by progranulin deficiency, implicating Wnt signaling.; Neuron, 71: 1030-42 |
|
GSE31772 GSE31840 |
| Rosen, Meghan D et al. (2011) Mutant thyroid hormone receptors (TRs) isolated from distinct cancer types display distinct target gene specificities: a unique regulatory repertoire associated with two renal clear cell carcinomas.; Mol Endocrinol, 25: 1311-25 |
|
GSE29159 |
| Rosen, Mitchell B et al. (2007) Gene expression profiling in the lung and liver of PFOA-exposed mouse fetuses.; Toxicology, 239: 15-33 |
|
GSE13044 |
| Rosen, Mitchell B et al. (2009) Gene expression profiling in the liver and lung of perfluorooctane sulfonate-exposed mouse fetuses: comparison to changes induced by exposure to perfluorooctanoic acid.; Reprod Toxicol, 27: 278-88 |
|
GSE13302 |
| Rosen, Mitchell B et al. (2010) Gene Expression Profiling in Wild-Type and PPAR?-Null Mice Exposed to Perfluorooctane Sulfonate Reveals PPAR?-Independent Effects.; PPAR Res, 2010: [no pages] |
|
GSE22871 |
| Rosenbaum, Corinna et al. (2016) Activation of Myenteric Glia during Acute Inflammation In Vitro and In Vivo.; PLoS One, 11: e0151335 |
|
GSE78015 |
| Rosenberg, Marci F et al. (2023) β-Adrenergic Signaling Promotes Morphological Maturation of Astrocytes in Female Mice.; J Neurosci, 43: 8621-8636 |
|
GSE235840 |
| Rosenberg, Martina J et al. (2010) Effects of moderate drinking during pregnancy on placental gene expression.; Alcohol, 44: 673-90 |
|
GSE18162 |
| Rosenberg, Miriam I et al. (2023) Polyclonal lymphoid expansion drives paraneoplastic autoimmunity in neuroblastoma.; Cell Rep, 42: 112879 |
|
GSE189367 |
| Rosenbloom, Alyssa B et al. (2020) ?-Catenin signaling dynamics regulate cell fate in differentiating neural stem cells.; Proc Natl Acad Sci U S A, [no vol.]: [no pages] |
|
GSE155862 |
| Rosenzweig, Neta et al. (2024) Sex-dependent APOE4 neutrophil-microglia interactions drive cognitive impairment in Alzheimer's disease.; Nat Med, [no vol.]: [no pages] |
|
GSE243744 GSE243747 GSE243745 GSE243746 GSE243743 |
| Rosety, Isabel et al. (2023) Impaired neuron differentiation in GBA-associated Parkinson's disease is linked to cell cycle defects in organoids.; NPJ Parkinsons Dis, 9: 166 |
|
GSE208781 |
| Rosina, Marco et al. (2025) Brown Adipose Tissue undergoes pathological perturbations and shapes C2C12 myoblast homeostasis in the SOD1-G93A mouse model of Amyotrophic Lateral Sclerosis.; Heliyon, 11: e41801 |
|
GSE273052 |
| Rosines, E et al. (2007) Staged in vitro reconstitution and implantation of engineered rat kidney tissue.; Proc Natl Acad Sci U S A, 104: 20938-43 |
|
GSE9570 |
| Rosolowski, Maciej et al. (2013) Massive transcriptional perturbation in subgroups of diffuse large B-cell lymphomas.; PLoS One, 8: e76287 |
|
GSE43677 |
| Ross, A Catharine et al. (2011) Multiple cytochrome P-450 genes are concomitantly regulated by vitamin A under steady-state conditions and by retinoic acid during hepatic first-pass metabolism.; Physiol Genomics, 43: 57-67 |
|
GSE24104 |
| Ross, Alexander W et al. (2011) Thyroid hormone signalling genes are regulated by photoperiod in the hypothalamus of F344 rats.; PLoS One, 6: e21351 |
|
GSE27926 |
| Ross, Andrea J et al. (2007) Transcriptional profiling of mucociliary differentiation in human airway epithelial cells.; Am J Respir Cell Mol Biol, 37: 169-85 |
|
GSE5264 |
| Ross, D T et al. (2000) Systematic variation in gene expression patterns in human cancer cell lines.; Nat Genet, 24: 227-35 |
|
GSE59 |
| Ross, James L et al. (2024) Microglia and monocyte-derived macrophages drive progression of pediatric high-grade gliomas and are transcriptionally shaped by histone mutations.; Immunity, 57: 2669-2687.e6 |
|
GSE245716 |
| Ross, P Joel et al. (2020) Synaptic Dysfunction in Human Neurons With Autism-Associated Deletions in PTCHD1-AS.; Biol Psychiatry, 87: 139-149 |
|
GSE129808 GSE81624 |
| Ross, Sarah E et al. (2002) Microarray analyses during adipogenesis: understanding the effects of Wnt signaling on adipogenesis and the roles of liver X receptor alpha in adipocyte metabolism.; Mol Cell Biol, 22: 5989-99 |
|
ross-adipogenesis |
| Ross-Innes, Caryn S et al. (2010) Cooperative interaction between retinoic acid receptor-alpha and estrogen receptor in breast cancer.; Genes Dev, 24: 171-82 |
|
GSE22213 |
| Rossi, Chiara et al. (2018) Interleukin 4 modulates microglia homeostasis and attenuates the early slowly progressive phase of amyotrophic lateral sclerosis.; Cell Death Dis, 9: 250 |
|
GSE103607 |
| Rossi, Greta et al. (2023) MCT1-dependent energetic failure and neuroinflammation underlie optic nerve degeneration in Wolfram syndrome mice.; Elife, 12: [no pages] |
|
GSE206150 |
| Rossi, Maïlys et al. (2022) Beta-blockers disrupt mitochondrial bioenergetics and increase radiotherapy efficacy independently of beta-adrenergic receptors in medulloblastoma.; EBioMedicine, 82: 104149 |
|
GSE191165 |
| Rossi, Sharyn L et al. (2016) Identification of early gene expression changes in primary cultured neurons treated with topoisomerase I poisons.; Biochem Biophys Res Commun, 479: 319-324 |
|
GSE67146 |
| Rossignoli, Giada et al. (2021) Aromatic l-amino acid decarboxylase deficiency: a patient-derived neuronal model for precision therapies.; Brain, 144: 2443-2456 |
|
GSE153990 |
| Rossitto, Leigh-Ana M et al. (2026) Ketone body β-hydroxybutyrate restores neuronal Tau proteostasis via ketolysis-independent mechanism.; bioRxiv, [no vol.]: [no pages] |
|
GSE314609 |
| Rossmeisl, Martin et al. (2014) Omega-3 phospholipids from fish suppress hepatic steatosis by integrated inhibition of biosynthetic pathways in dietary obese mice.; Biochim Biophys Acta, 1841: 267-78 |
|
GSE45235 |
| Rossner, Moritz J et al. (2014) Thy1.2 driven expression of transgenic His6-SUMO2 in the brain of mice alters a restricted set of genes.; Brain Res, 1575: 1-11 |
|
GSE47951 |
| Rotger, Margalida et al. (2010) Genome-wide mRNA expression correlates of viral control in CD4+ T-cells from HIV-1-infected individuals.; PLoS Pathog, 6: e1000781 |
|
GSE18233 |
| Rotger, Margalida et al. (2011) Comparative transcriptomics of extreme phenotypes of human HIV-1 infection and SIV infection in sooty mangabey and rhesus macaque.; J Clin Invest, 121: 2391-400 |
|
GSE28128 |
| Roth, Adrian et al. (2011) Gene expression-based in vivo and in vitro prediction of liver toxicity allows compound selection at an early stage of drug development.; J Biochem Mol Toxicol, 25: 183-94 |
|
GSE17388 |
| Roth, Christian L et al. (2007) Expression of a tumor-related gene network increases in the mammalian hypothalamus at the time of female puberty.; Endocrinology, 148: 5147-61 |
|
GSE8310 |
| Roth, Jonathan F et al. (2023) Systematic analysis of alternative exon-dependent interactome remodeling reveals multitasking functions of gene regulatory factors.; Mol Cell, 83: 4222-4238.e10 |
|
GSE224969 GSE224970 |
| Roth, Julien G et al. (2020) 16p11.2 microdeletion imparts transcriptional alterations in human iPSC-derived models of early neural development.; Elife, 9: [no pages] |
|
GSE144736 |
| Roth, Richard B et al. (2006) Gene expression analyses reveal molecular relationships among 20 regions of the human CNS.; Neurogenetics, 7: 67-80 |
|
GSE3526 |
| Rother, Nils et al. (2020) Hydroxychloroquine Inhibits the Trained Innate Immune Response to Interferons.; Cell Rep Med, 1: 100146 |
|
GSE159678 |
| Rothgangl, Tanja et al. (2021) In vivo adenine base editing of PCSK9 in macaques reduces LDL cholesterol levels.; Nat Biotechnol, 39: 949-957 |
|
GSE168363.2 GSE168363.1 |
| Rothstein, Megan et al. (2025) TGF-β signaling controls neural crest developmental plasticity via SMAD2/3.; Dev Cell, [no vol.]: [no pages] |
|
GSE175809 |
| Rotman, Yaron et al. (2013) Effect of ribavirin on viral kinetics and liver gene expression in chronic hepatitis C.; Gut, [no vol.]: [no pages] |
|
GSE38663 |
| Rottscheidt, Ruth et al. (2007) Extensive additivity of gene expression differentiates subspecies of the house mouse.; Genetics, 177: 1553-67 |
|
GSE9338 |
| Rotunno, Melissa et al. (2011) A gene expression signature from peripheral whole blood for stage I lung adenocarcinoma.; Cancer Prev Res (Phila), 4: 1599-608 |
|
GSE20189 |