List of all 20,073 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Sinnaeve, Peter R et al. (2009) Gene expression patterns in peripheral blood correlate with the extent of coronary artery disease.; PLoS One, 4: e7037 |
|
GSE12288 |
| Sinton, Matthew C et al. (2023) IL-17 signalling is critical for controlling subcutaneous adipose tissue dynamics and parasite burden during chronic murine Trypanosoma brucei infection.; Nat Commun, 14: 7070 |
|
GSE210600 |
| Sintov, Elad et al. (2015) Inhibition of ZEB1 expression induces redifferentiation of adult human β cells expanded in vitro.; Sci Rep, 5: 13024 |
|
GSE69658 |
| Sipprell, Sophie E et al. (2025) Substance P Augments Chemokine Production by Staphylococcus aureus Infected Murine Osteoclasts.; Inflammation, [no vol.]: [no pages] |
|
GSE287095 |
| Sircar, Kanishka et al. (2015) Biphasic components of sarcomatoid clear cell renal cell carcinomas are molecularly similar to each other, but distinct from, non-sarcomatoid renal carcinomas.; J Pathol Clin Res, 1: 212-24 |
|
GSE59066 |
| Sirica, Alphonse E et al. (2009) Intrahepatic cholangiocarcinoma progression: prognostic factors and basic mechanisms.; Clin Gastroenterol Hepatol, 7: S68-78 |
|
GSE15498 |
| Sirko, Swetlana et al. (2015) Astrocyte reactivity after brain injury-: The role of galectins 1 and 3.; Glia, 63: 2340-61 |
|
GSE66370 |
| Sirozh, Oleksandra et al. (2024) Nucleolar stress caused by arginine-rich peptides triggers a ribosomopathy and accelerates aging in mice.; Mol Cell, 84: 1527-1540.e7 |
|
GSE239319 |
| Sirri, Alessandra et al. (2010) Temporal gene expression profile of the hippocampus following trace fear conditioning.; Brain Res, 1308: 14-23 |
|
GSE16158 |
| Sit, Ying Ting et al. (2023) Synergistic roles of DYRK1A and GATA1 in trisomy 21 megakaryopoiesis.; JCI Insight, 8: [no pages] |
|
GSE243702 |
| Sithara, Smithamol et al. (2023) Identification of reversible and druggable pathways to improve beta-cell function and survival in Type 2 diabetes.; Islets, 15: 2165368 |
|
GSE218540 |
| Sitrin, Jonathan et al. (2013) Regulatory T cells control NK cells in an insulitic lesion by depriving them of IL-2.; J Exp Med, 210: 1153-65 |
|
GSE39197 |
| Sivakumar, Sushama et al. (2022) TP53 promotes lineage commitment of human embryonic stem cells through ciliogenesis and sonic hedgehog signaling.; Cell Rep, 38: 110395 |
|
GSE168678 GSE168752 |
| Sivanesan, Eellan et al. (2019) Spinal cord stimulation prevents paclitaxel-induced mechanical and cold hypersensitivity and modulates spinal gene expression in rats.; Pain Rep, 4: e785 |
|
GSE132491 |
| Sjödahl, Gottfrid et al. (2012) A molecular taxonomy for urothelial carcinoma.; Clin Cancer Res, 18: 3377-86 |
|
GSE32894 |
| Sjölund, Jonas et al. (2014) Identification of Hipk2 as an essential regulator of white fat development.; Proc Natl Acad Sci U S A, 111: 7373-8 |
|
GSE46077 |
| Sjöstrand, Maria et al. (2013) Expression of the immune regulator tripartite-motif 21 is controlled by IFN regulatory factors.; J Immunol, 191: 3753-63 |
|
GSE48378 |
| Skariah, Geena et al. (2017) Mov10 suppresses retroelements and regulates neuronal development and function in the developing brain.; BMC Biol, 15: 54 |
|
GSE87862 |
| Skepner, Jill et al. (2014) Pharmacologic inhibition of ROR?t regulates Th17 signature gene expression and suppresses cutaneous inflammation in vivo.; J Immunol, 192: 2564-75 |
|
GSE53455 |
| Skinner, Michael K et al. (2008) Transgenerational epigenetic programming of the brain transcriptome and anxiety behavior.; PLoS One, 3: e3745 |
|
GSE14269 |
| Skinner, Michael K et al. (2012) Epigenetic transgenerational inheritance of somatic transcriptomes and epigenetic control regions.; Genome Biol, 13: R91 |
|
GSE35839 |
| Skinner, Michael K et al. (2014) Gene bionetworks involved in the epigenetic transgenerational inheritance of altered mate preference: environmental epigenetics and evolutionary biology.; BMC Genomics, 15: 377 |
|
GSE33830 |
| Skogsberg, Josefin et al. (2008) Transcriptional profiling uncovers a network of cholesterol-responsive atherosclerosis target genes.; PLoS Genet, 4: e1000036 |
|
GSE38574 |
| Skory, Robin M et al. (2013) Microarray analysis identifies COMP as the most differentially regulated transcript throughout in vitro follicle growth.; Mol Reprod Dev, 80: 132-44 |
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GSE42795 |
| Skotheim, Rolf I et al. (2005) Differentiation of human embryonal carcinomas in vitro and in vivo reveals expression profiles relevant to normal development.; Cancer Res, 65: 5588-98 |
|
GSE1818 |
| Skov, Vibe et al. (2007) Reduced expression of nuclear-encoded genes involved in mitochondrial oxidative metabolism in skeletal muscle of insulin-resistant women with polycystic ovary syndrome.; Diabetes, 56: 2349-55 |
|
GSE6798 |
| Skov, Vibe et al. (2008) Pioglitazone enhances mitochondrial biogenesis and ribosomal protein biosynthesis in skeletal muscle in polycystic ovary syndrome.; PLoS One, 3: e2466 |
|
GSE8157 |
| Skov, Vibe et al. (2011) Whole-blood transcriptional profiling of interferon-inducible genes identifies highly upregulated IFI27 in primary myelofibrosis.; Eur J Haematol, 87: 54-60 |
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GSE26049.1 |
| Skrzypczak, Magdalena et al. (2010) Modeling oncogenic signaling in colon tumors by multidirectional analyses of microarray data directed for maximization of analytical reliability.; PLoS One, 5: [no pages] |
|
GSE20916 |
| Skuli, Nicolas et al. (2009) Endothelial deletion of hypoxia-inducible factor-2alpha (HIF-2alpha) alters vascular function and tumor angiogenesis.; Blood, 114: 469-77 |
|
GSE16067 |
| Skupio, Urszula et al. (2016) Behavioral and transcriptional patterns of protracted opioid self-administration in mice.; Addict Biol, [no vol.]: [no pages] |
|
GSE78280 |
| Skylar-Scott, Mark A et al. (2022) Orthogonally induced differentiation of stem cells for the programmatic patterning of vascularized organoids and bioprinted tissues.; Nat Biomed Eng, 6: 449-462 |
|
GSE193148 |
| Slatter, Tania L et al. (2011) Hyperproliferation, cancer, and inflammation in mice expressing a Δ133p53-like isoform.; Blood, 117: 5166-77 |
|
GSE27586 |
| Slaughter, Mariesa J et al. (2021) HDAC inhibition results in widespread alteration of the histone acetylation landscape and BRD4 targeting to gene bodies.; Cell Rep, 34: 108638 |
|
GSE159620 |
| Slebos, Robbert J C et al. (2006) Gene expression differences associated with human papillomavirus status in head and neck squamous cell carcinoma.; Clin Cancer Res, 12: 701-9 |
|
GSE3292 |
| Sloley, Stephanie S et al. (2021) High-frequency head impact causes chronic synaptic adaptation and long-term cognitive impairment in mice.; Nat Commun, 12: 2613 |
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GSE165757 GSE165759 |
| Slomnicki, Lukasz P et al. (2020) Improved locomotor recovery after contusive spinal cord injury in Bmal1-/-mice is associated with protection of the blood spinal cord barrier.; Sci Rep, 10: 14212 |
|
GSE151685 |
| Slonchak, Andrii et al. (2023) Noncoding RNA of Zika Virus Affects Interplay between Wnt-Signaling and Pro-Apoptotic Pathways in the Developing Brain Tissue.; Viruses, 15: [no pages] |
|
GSE230197 |
| Slonim, Donna K et al. (2009) Functional genomic analysis of amniotic fluid cell-free mRNA suggests that oxidative stress is significant in Down syndrome fetuses.; Proc Natl Acad Sci U S A, 106: 9425-9 |
|
GSE16176 |
| Slota, Jessy A et al. (2022) Neurons and Astrocytes Elicit Brain Region Specific Transcriptional Responses to Prion Disease in the Murine CA1 and Thalamus.; Front Neurosci, 16: 918811 |
|
GSE201249 |
| Slyper, Michal et al. (2012) Control of breast cancer growth and initiation by the stem cell-associated transcription factor TCF3.; Cancer Res, 72: 5613-24 |
|
GSE38893 |
| Small, Christopher L et al. (2005) Profiling gene expression during the differentiation and development of the murine embryonic gonad.; Biol Reprod, 72: 492-501 |
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GSE6916 |
| Smallie, Tim et al. (2015) Dual-Specificity Phosphatase 1 and Tristetraprolin Cooperate To Regulate Macrophage Responses to Lipopolysaccharide.; J Immunol, 195: 277-88 |
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GSE68449 |
| Smallwood, Kelly et al. (2023) POLR1A variants underlie phenotypic heterogeneity in craniofacial, neural, and cardiac anomalies.; Am J Hum Genet, 110: 809-825 |
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GSE206197 |
| Smati, Sarra et al. (2022) Integrative study of diet-induced mouse models of NAFLD identifies PPARα as a sexually dimorphic drug target.; Gut, 71: 807-821 |
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GSE159086 GSE159089 GSE159090 GSE159088 |
| Smeekens, Sanne P et al. (2013) Functional genomics identifies type I interferon pathway as central for host defense against Candida albicans.; Nat Commun, 4: 1342 |
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GSE42606 |
| Smeets, A et al. (2011) Prediction of lymph node involvement in breast cancer from primary tumor tissue using gene expression profiling and miRNAs.; Breast Cancer Res Treat, 129: 767-76 |
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GSE23177 |
| Smeets, Pascal J H et al. (2008) Transcriptomic analysis of PPARalpha-dependent alterations during cardiac hypertrophy.; Physiol Genomics, 36: 15-23 |
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GSE12337 |
| Smeets, Ruben L et al. (2012) Molecular pathway profiling of T lymphocyte signal transduction pathways; Th1 and Th2 genomic fingerprints are defined by TCR and CD28-mediated signaling.; BMC Immunol, 13: 12 |
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GSE30676 GSE30674 |
| Smeyers, Julie et al. (2025) Phospho-proteome profiling in human neurons reveals targets of TBK1 in ALS/FTD-associated autophagy networks.; Cell Rep, 44: 116494 |
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GSE308151 |
| Smirnov, Denis A et al. (2009) Genetic analysis of radiation-induced changes in human gene expression.; Nature, 459: 587-91 |
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GSE12626 |
| Smirnov, Denis A et al. (2012) Genetic variation in radiation-induced cell death.; Genome Res, 22: 332-9 |
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GSE26835 |
| Smirnov, Dmitrii et al. (2023) SIRT6 is a key regulator of mitochondrial function in the brain.; Cell Death Dis, 14: 35 |
|
GSE221077 |
| Smit-McBride, Zeljka et al. (2011) In vivo gene expression profiling of retina postintravitreal injections of dexamethasone and triamcinolone at clinically relevant time points for patient care.; Invest Ophthalmol Vis Sci, 52: 8965-78 |
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GSE30701 |
| Smit-McBride, Zeljka et al. (2016) Comparison of In Vivo Gene Expression Profiling of RPE/Choroid following Intravitreal Injection of Dexamethasone and Triamcinolone Acetonide.; J Ophthalmol, 2016: 9856736 |
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GSE49872 |
| Smith, Alexander C W et al. (2024) A master regulator of opioid reward in the ventral prefrontal cortex.; Science, 384: eadn0886 |
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GSE260687 |
| Smith, Anthony J et al. (2010) Host genes associated with HIV-1 replication in lymphatic tissue.; J Immunol, 185: 5417-24 |
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GSE21589 |
| Smith, Brittany L et al. (2022) Perinatal Morphine Exposure Leads to Sex-Dependent Executive Function Deficits and Microglial Changes in Mice.; eNeuro, 9: [no pages] |
|
GSE206032 |
| Smith, Bryan A et al. (2015) A basal stem cell signature identifies aggressive prostate cancer phenotypes.; Proc Natl Acad Sci U S A, 112: E6544-52 |
|
GSE82071 |
| Smith, Daniel C et al. (2022) Deletion of the Alzheimer's disease risk geneAbi3locus results in obesity and systemic metabolic disruption in mice.; Front Aging Neurosci, 14: 1035572 |
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GSE212299 |
| Smith, Danielle M et al. (2024) Rab30 facilitates lipid homeostasis during fasting.; Nat Commun, 15: 4469 |
|
GSE240396 |
| Smith, Dirk E et al. (2009) A central nervous system-restricted isoform of the interleukin-1 receptor accessory protein modulates neuronal responses to interleukin-1.; Immunity, 30: 817-31 |
|
GSE16104 |
| Smith, Joan C et al. (2008) Gene profiling of keloid fibroblasts shows altered expression in multiple fibrosis-associated pathways.; J Invest Dermatol, 128: 1298-310 |
|
GSE7890 |
| Smith, Judith A et al. (2008) Gene expression analysis of macrophages derived from ankylosing spondylitis patients reveals interferon-gamma dysregulation.; Arthritis Rheum, 58: 1640-9 |
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GSE11886 |
| Smith, Justine R et al. (2007) Unique gene expression profiles of donor-matched human retinal and choroidal vascular endothelial cells.; Invest Ophthalmol Vis Sci, 48: 2676-84 |
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GSE7850 |
| Smith, Kyle S et al. (2022) Unified rhombic lip origins of group 3 and group 4 medulloblastoma.; Nature, 609: 1012-1020 |
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GSE209919 |
| Smith, Laura L et al. (2003) Telomerase modulates expression of growth-controlling genes and enhances cell proliferation.; Nat Cell Biol, 5: 474-9 |
|
GSE361 |
| Smith, Lincoln S et al. (2010) Effects of age on the synergistic interactions between lipopolysaccharide and mechanical ventilation in mice.; Am J Respir Cell Mol Biol, 43: 475-86 |
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GSE18341 |
| Smith, Lucas R et al. (2009) Novel transcriptional profile in wrist muscles from cerebral palsy patients.; BMC Med Genomics, 2: 44 |
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GSE11686 |
| Smith, Lucas R et al. (2012) Transcriptional abnormalities of hamstring muscle contractures in children with cerebral palsy.; PLoS One, 7: e40686 |
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GSE31243 |
| Smith, Mackenzie E et al. (2024) Upregulated hepatic lipogenesis from dietary sugars in response to low palmitate feeding supplies brain palmitate.; Nat Commun, 15: 490 |
|
GSE225568 |
| Smith, Maren L et al. (2016) Time-Course Analysis of Brain Regional Expression Network Responses to Chronic Intermittent Ethanol and Withdrawal: Implications for Mechanisms Underlying Excessive Ethanol Consumption.; PLoS One, 11: e0146257 |
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GSE72515 GSE72514 GSE72516 GSE72513 GSE72507 |
| Smith, Maren L et al. (2020) Brain regional gene expression network analysis identifies unique interactions between chronic ethanol exposure and consumption.; PLoS One, 15: e0233319 |
|
GSE143419 |
| Smith, Maren L et al. (2023) Identification of candidate genes for nicotine withdrawal in C57BL/6J × DBA/2J recombinant inbred mice.; Genes Brain Behav, 22: e12844 |
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GSE181547 |
| Smith, Matthew D et al. (2022) Reactive Astrocytes Derived From Human Induced Pluripotent Stem Cells Suppress Oligodendrocyte Precursor Cell Differentiation.; Front Mol Neurosci, 15: 874299 |
|
GSE196575 |
| Smith, Milo R et al. (2016) Integrative Analysis of Disease Signatures Shows Inflammation Disrupts Juvenile Experience-Dependent Cortical Plasticity.; eNeuro, 3: [no pages] |
|
GSE89757 |
| Smith, Sarah E et al. (2020) Astrocyte deletion of α2-Na/K ATPase triggers episodic motor paralysis in mice via a metabolic pathway.; Nat Commun, 11: 6164 |
|
GSE145102 |
| Smith, Scott C et al. (2012) Downregulation of cholesterol biosynthesis genes in the forebrain of ERCC1-deficient mice.; Neurobiol Dis, 45: 1136-44 |
|
GSE31199 |
| Smith, Sinéad M et al. (2011) Tribbles 3: a novel regulator of TLR2-mediated signaling in response to Helicobacter pylori lipopolysaccharide.; J Immunol, 186: 2462-71 |
|
GSE25155 |
| Smith, Tyler A et al. (2020) Coding transcriptome analyses reveal altered functions underlying immunotolerance of PEG-fused rat sciatic nerve allografts.; J Neuroinflammation, 17: 287 |
|
GSE145504 |
| Smith-Anttila, C J A et al. (2020) Identification of a Sacral, Visceral Sensory Transcriptome in Embryonic and Adult Mice.; eNeuro, 7: [no pages] |
|
GSE131623 |
| Smith-Geater, Charlene et al. (2020) Aberrant Development Corrected in Adult-Onset Huntington's Disease iPSC-Derived Neuronal Cultures via WNT Signaling Modulation.; Stem Cell Reports, 14: 406-419 |
|
GSE144559 |
| Smits, Jos G A et al. (2023) Identification of the regulatory circuit governing corneal epithelial fate determination and disease.; PLoS Biol, 21: e3002336 |
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GSE206922 GSE242990 |
| Smits, Lisa M et al. (2019) Modeling Parkinson's disease in midbrain-like organoids.; NPJ Parkinsons Dis, 5: 5 |
|
GSE127967 |
| Smythies, Lesley E et al. (2024) Human intestinal stromal cells promote homeostasis in normal mucosa but inflammation in Crohn's disease in a retinoic acid-deficient manner.; Mucosal Immunol, [no vol.]: [no pages] |
|
GSE178994 |
| Snijders, Antoine M et al. (2015) Expression profiling reveals transcriptional regulation by Fbxw7/mTOR pathway in radiation-induced mouse thymic lymphomas.; Oncotarget, 6: 44794-805 |
|
GSE71975 |
| Snyder, Elizabeth M et al. (2010) Gene expression in the efferent ducts, epididymis, and vas deferens during embryonic development of the mouse.; Dev Dyn, 239: 2479-91 |
|
GSE22616 |
| Sırma Ekmekci, Sema et al. (2020) LEF1InducesDHRS2Gene Expression in Human Acute Leukemia Jurkat T-Cells.; Turk J Haematol, 37: 226-233 |
|
GSE129917 |
| Škandík, Martin et al. (2025) Age-associated microglial transcriptome leads to diminished immunogenicity and dysregulation of MCT4 and P2RY12/P2RY13 related functions.; Cell Death Discov, 11: 16 |
|
GSE287220 |