List of all 16,768 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Thorsteinsson, Morten et al. (2012) Gene expression profiles in stages II and III colon cancers: application of a 128-gene signature.; Int J Colorectal Dis, 27: 1579-86 |
|
GSE31595 |
| Thudium, Samuel et al. (2022) Identification of a transcriptional signature found in multiple models of ASD and related disorders.; Genome Res, [no vol.]: [no pages] |
|
GSE193663 |
| Thuong, Nguyen Thuy Thuong et al. (2008) Identification of tuberculosis susceptibility genes with human macrophage gene expression profiles.; PLoS Pathog, 4: e1000229 |
|
GSE11199 |
| Thurman, Robert E et al. (2012) The accessible chromatin landscape of the human genome.; Nature, 489: 75-82 |
|
GSE17778 |
| Thümmler, Katja et al. (2019) Polarizing receptor activation dissociates fibroblast growth factor 2 mediated inhibition of myelination from its neuroprotective potential.; Acta Neuropathol Commun, 7: 212 |
|
GSE65466 |
| Tiacci, Enrico et al. (2012) Analyzing primary Hodgkin and Reed-Sternberg cells to capture the molecular and cellular pathogenesis of classical Hodgkin lymphoma.; Blood, [no vol.]: [no pages] |
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GSE40160 |
| Tian, Bing et al. (2005) Identification of direct genomic targets downstream of the nuclear factor-kappaB transcription factor mediating tumor necrosis factor signaling.; J Biol Chem, 280: 17435-48 |
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GSE2624 |
| Tian, Bing et al. (2018) The NFκB subunit RELA is a master transcriptional regulator of the committed epithelial-mesenchymal transition in airway epithelial cells.; J Biol Chem, 293: 16528-16545 |
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GSE84135 |
| Tian, Chan et al. (2014) Analyses of the similarity and difference of global gene expression profiles in cortex regions of three neurodegenerative diseases: sporadic Creutzfeldt-Jakob disease (sCJD), fatal familial insomnia (FFI), and Alzheimer's disease (AD).; Mol Neurobiol, 50: 473-81 |
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GSE40562 |
| Tian, Erming et al. (2003) The role of the Wnt-signaling antagonist DKK1 in the development of osteolytic lesions in multiple myeloma.; N Engl J Med, 349: 2483-94 |
|
GSE755 |
| Tian, Feng et al. (2022) Core transcription programs controlling injury-induced neurodegeneration of retinal ganglion cells.; Neuron, 110: 2607-2624.e8 |
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GSE190667 GSE184547 |
| Tian, Fu-Ju et al. (2016) The YY1/MMP2 axis promotes trophoblast invasion at the maternal-fetal interface.; J Pathol, 239: 36-47 |
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GSE76862 |
| Tian, Jun et al. (2015) Dexamethasone affects mouse olfactory mucosa gene expression and attenuates genes related to neurite outgrowth.; Int Forum Allergy Rhinol, 5: 907-18 |
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GSE68151 |
| Tian, Meng et al. (2008) hem6: an ENU-induced recessive hypochromic microcytic anemia mutation in the mouse.; Blood, 112: 4308-13 |
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GSE16174 |
| Tian, Shuang et al. (2024) Atractylenolide II Suppresses Glycolysis and Induces Apoptosis by Blocking the PADI3-ERK Signaling Pathway in Endometrial Cancer Cells.; Molecules, 29: [no pages] |
|
GSE252780 |
| Tian, Xiaofeng et al. (2024) Transcriptomic analysis to identify genes associated with hypothalamus vulnerability in aging mice with cognitive decline.; Behav Brain Res, 465: 114943 |
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GSE240365 |
| Tian, Yingfang et al. (2012) Correlations of gene expression with ratings of inattention and hyperactivity/impulsivity in Tourette syndrome: a pilot study.; BMC Med Genomics, 5: 49 |
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GSE30470 |
| Tiane, Assia et al. (2023) From methylation to myelination: epigenomic and transcriptomic profiling of chronic inactive demyelinated multiple sclerosis lesions.; Acta Neuropathol, 146: 283-299 |
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GSE224377 |
| Tiberi, Alexia et al. (2023) Reduced levels of NGF shift astrocytes toward a neurotoxic phenotype.; Front Cell Dev Biol, 11: 1165125 |
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GSE108103 |
| Tice, Abigail L et al. (2021) Binge alcohol disrupts skeletal muscle core molecular clock independent of glucocorticoids.; Am J Physiol Endocrinol Metab, 321: E606-E620 |
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GSE183665 |
| Tiemessen, Machteld M et al. (2012) The nuclear effector of Wnt-signaling, Tcf1, functions as a T-cell-specific tumor suppressor for development of lymphomas.; PLoS Biol, 10: e1001430 |
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GSE54976 |
| Tierney, Emily P et al. (2003) Activation of the protein kinase A pathway in human endometrial stromal cells reveals sequential categorical gene regulation.; Physiol Genomics, 16: 47-66 |
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GSE403 |
| Tiihonen, Jari et al. (2021) Molecular signaling pathways underlying schizophrenia.; Schizophr Res, 232: 33-41 |
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GSE174704 |
| Tijet, Nathalie et al. (2006) Aryl hydrocarbon receptor regulates distinct dioxin-dependent and dioxin-independent gene batteries.; Mol Pharmacol, [no vol.]: [no pages] |
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GSE10082 |
| Tiklová, Katarína et al. (2021) Disease Duration Influences Gene Expression in Neuromelanin-Positive Cells From Parkinson's Disease Patients.; Front Mol Neurosci, 14: 763777 |
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GSE182622 |
| Tilley, Ann E et al. (2009) Down-regulation of the notch pathway in human airway epithelium in association with smoking and chronic obstructive pulmonary disease.; Am J Respir Crit Care Med, 179: 457-66 |
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GSE7832 |
| Tillotson, Rebekah et al. (2021) Neuronal non-CG methylation is an essential target for MeCP2 function.; Mol Cell, 81: 1260-1275.e12 |
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GSE152800 |
| Tilton, Susan C et al. (2013) Diet-induced obesity reprograms the inflammatory response of the murine lung to inhaled endotoxin.; Toxicol Appl Pharmacol, 267: 137-48 |
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GSE38092 GSE47022 |
| Tilton, Susan C et al. (2013) Impaired transcriptional response of the murine heart to cigarette smoke in the setting of high fat diet and obesity.; Chem Res Toxicol, 26: 1034-42 |
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GSE38093 |
| Timaxian, Colin et al. (2020) The health status alters the pituitary function and reproduction of mice in aCxcr2-dependent manner.; Life Sci Alliance, 3: [no pages] |
|
GSE144231 |
| Timilsina, Santosh et al. (2022) The antidepressant imipramine inhibits breast cancer growth by targeting estrogen receptor signaling and DNA repair events.; Cancer Lett, 540: 215717 |
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GSE190814 |
| Timme, S et al. (2014) STAT3 expression, activity and functional consequences of STAT3 inhibition in esophageal squamous cell carcinomas and Barrett's adenocarcinomas.; Oncogene, 33: 3256-66 |
|
GSE47763 |
| Timmerman, Luika A et al. (2013) Glutamine sensitivity analysis identifies the xCT antiporter as a common triple-negative breast tumor therapeutic target.; Cancer Cell, 24: 450-65 |
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GSE48984 |
| Timmons, James A et al. (2007) Myogenic gene expression signature establishes that brown and white adipocytes originate from distinct cell lineages.; Proc Natl Acad Sci U S A, 104: 4401-6 |
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GSE7032 |
| Timofeeva, Olga A et al. (2009) Enhanced expression of SOS1 is detected in prostate cancer epithelial cells from African-American men.; Int J Oncol, 35: 751-60 |
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GSE17356 |
| Timofeeva, Olga A et al. (2013) STAT3 suppresses transcription of proapoptotic genes in cancer cells with the involvement of its N-terminal domain.; Proc Natl Acad Sci U S A, 110: 1267-72 |
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GSE25866 GSE25867 |
| Ting, Pamela Y et al. (2024) A molecular glue degrader of the WIZ transcription factor for fetal hemoglobin induction.; Science, 385: 91-99 |
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GSE247096 |
| Tiniakou, Ioanna et al. (2024) Genome-wide screening identifies Trim33 as an essential regulator of dendritic cell differentiation.; Sci Immunol, 9: eadi1023 |
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GSE259392 GSE202584 |
| Tinterri, Andrea et al. (2018) Active intermixing of indirect and direct neurons builds the striatal mosaic.; Nat Commun, 9: 4725 |
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GSE120898 |
| Tintle, Suzanne et al. (2011) Reversal of atopic dermatitis with narrow-band UVB phototherapy and biomarkers for therapeutic response.; J Allergy Clin Immunol, 128: 583-593.e4 |
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GSE27887 |
| Tiong, Sheena Yin Xin et al. (2019) Kcnab1Is Expressed in Subplate Neurons With Unilateral Long-Range Inter-Areal Projections.; Front Neuroanat, 13: 39 |
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GSE123351 |
| Tirode, Franck et al. (2007) Mesenchymal stem cell features of Ewing tumors.; Cancer Cell, 11: 421-9 |
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GSE7007 |
| Tisserand, Johan et al. (2011) Tripartite motif 24 (Trim24/Tif1?) tumor suppressor protein is a novel negative regulator of interferon (IFN)/signal transducers and activators of transcription (STAT) signaling pathway acting through retinoic acid receptor ? (Rar?) inhibition.; J Biol Chem, 286: 33369-79 |
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GSE19675 |
| Titov, Anton A et al. (2019) Metformin Inhibits the Type 1 IFN Response in Human CD4+T Cells.; J Immunol, 203: 338-348 |
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GSE119446 |
| Titus, Katelyn R et al. (2023) Cell type-specific loops linked to RNA polymerase II elongation in human neural differentiation.; bioRxiv, [no vol.]: [no pages] |
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GSE220103 |
| Tiveron, Marie-Catherine et al. [Unknown date]Zic-Proteins Are Repressors of Dopaminergic Forebrain Fate in Mice andC. elegans.; J Neurosci, 37: 10611-10623 |
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GSE69693 |
| Tiwari, Neha et al. (2013) Klf4 is a transcriptional regulator of genes critical for EMT, including Jnk1 (Mapk8).; PLoS One, 8: e57329 |
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GSE49151 |
| Tiwari, Neha et al. (2013) Sox4 is a master regulator of epithelial-mesenchymal transition by controlling Ezh2 expression and epigenetic reprogramming.; Cancer Cell, 23: 768-83 |
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GSE44050 |
| Tiwari, Shashi Kant et al. (2017) Zika virus infection reprograms global transcription of host cells to allow sustained infection.; Emerg Microbes Infect, 6: e24 |
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GSE93870 |
| Tiwari, Vijay K et al. (2012) Target genes of Topoisomerase II? regulate neuronal survival and are defined by their chromatin state.; Proc Natl Acad Sci U S A, 109: E934-43 |
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GSE27245 GSE25529 |
| Tiwari, Vini et al. (2024) Innate immune training restores pro-reparative myeloid functions to promote remyelination in the aged central nervous system.; Immunity, 57: 2173-2190.e8 |
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GSE230191 GSE247529 |
| Toch, Mathilde et al. (2020) Onecut-dependent Nkx6.2 transcription factor expression is required for proper formation and activity of spinal locomotor circuits.; Sci Rep, 10: 996 |
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GSE141949 |
| Tock, Christine L et al. (2011) Transcriptional signatures of full-spectrum and non-UVB-spectrum solar irradiation in human skin.; Pigment Cell Melanoma Res, 24: 972-4 |
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GSE22083 |
| Toda, Masaaki et al. (2013) Differential gene expression in thrombomodulin (TM; CD141)(+) and TM(-) dendritic cell subsets.; PLoS One, 8: e72392 |
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GSE45652 |
| Toda, Tomohisa et al. (2017) Nup153 Interacts with Sox2 to Enable Bimodal Gene Regulation and Maintenance of Neural Progenitor Cells.; Cell Stem Cell, 21: 618-634.e7 |
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GSE99783 |
| Toda, Tomohisa et al. (2024) Long interspersed nuclear elements safeguard neural progenitors from precocious differentiation.; Cell Rep, 43: 113774 |
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GSE217643 |
| Todd, Brittany P et al. (2021) Traumatic brain injury results in unique microglial and astrocyte transcriptomes enriched for type I interferon response.; J Neuroinflammation, 18: 151 |
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GSE167459 |
| Todoerti, Katia et al. (2013) Transcriptional characterization of a prospective series of primary plasma cell leukemia revealed signatures associated with tumor progression and poorer outcome.; Clin Cancer Res, [no vol.]: [no pages] |
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GSE39925 |
| Todorov, Petar V et al. (2024) An RNA-seq atlas of mouse brain areas during fasting and diet-induced obesity.; Sci Data, 11: 44 |
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GSE236077 |
| Todorova, Valentina K et al. (2012) Transcriptome profiling of peripheral blood cells identifies potential biomarkers for doxorubicin cardiotoxicity in a rat model.; PLoS One, 7: e48398 |
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GSE37260 |
| Todt, Daniel et al. (2020) Robust hepatitis E virus infection and transcriptional response in human hepatocytes.; Proc Natl Acad Sci U S A, 117: 1731-1741 |
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GSE135619 |
| Toedter, Gary et al. (2011) Gene expression profiling and response signatures associated with differential responses to infliximab treatment in ulcerative colitis.; Am J Gastroenterol, 106: 1272-80 |
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GSE23597 |
| Tokairin, Kikutaro et al. (2020) Vascular Smooth Muscle Cell Derived from IPS Cell of Moyamoya Disease - Comparative Characterization with Endothelial Cell Transcriptome.; J Stroke Cerebrovasc Dis, 29: 105305 |
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GSE131293 |
| Toker, Aras et al. (2013) Active demethylation of the Foxp3 locus leads to the generation of stable regulatory T cells within the thymus.; J Immunol, 190: 3180-8 |
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GSE42021 |
| Tokizane, Kyohei et al. (2024) DMHPpp1r17neurons regulate aging and lifespan in mice through hypothalamic-adipose inter-tissue communication.; Cell Metab, 36: 377-392.e11 |
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GSE224509 |
| Tolfvenstam, Thomas et al. (2011) Characterization of early host responses in adults with dengue disease.; BMC Infect Dis, 11: 209 |
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GSE28405 |
| Toll, Agustí et al. (2016) MiR-204 silencing in intraepithelial to invasive cutaneous squamous cell carcinoma progression.; Mol Cancer, 15: 53 |
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GSE71953 |
| Tollis, Paolo et al. (2023) The long noncoding RNA nHOTAIRM1 is necessary for differentiation and activity of iPSC-derived spinal motor neurons.; Cell Death Dis, 14: 741 |
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GSE228681 |
| Tolstorukov, Michael Y et al. (2013) Swi/Snf chromatin remodeling/tumor suppressor complex establishes nucleosome occupancy at target promoters.; Proc Natl Acad Sci U S A, [no vol.]: [no pages] |
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GSE46645 |
| Toma, Jeremy S et al. [Unknown date]Peripheral Nerve Single-Cell Analysis Identifies Mesenchymal Ligands that Promote Axonal Growth.; eNeuro, 7: [no pages] |
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GSE146957 |
| Tomaiuolo, Pasquale et al. (2023) RNA sequencing of blood from sex- and age-matched discordant siblings supports immune and transcriptional dysregulation in autism spectrum disorder.; Sci Rep, 13: 807 |
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GSE212645 |
| Tomaru, Yasuhiro et al. (2014) A transient disruption of fibroblastic transcriptional regulatory network facilitates trans-differentiation.; Nucleic Acids Res, 42: 8905-13 |
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GSE44305 |
| Tomasoni, Romana et al. (2017) Lack of IL-1R8 in neurons causes hyperactivation of IL-1 receptor pathway and induces MECP2-dependent synaptic defects.; Elife, 6: [no pages] |
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GSE80446 |
| Tomasson, Michael H et al. (2008) Somatic mutations and germline sequence variants in the expressed tyrosine kinase genes of patients with de novo acute myeloid leukemia.; Blood, 111: 4797-808 |
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GSE10358 |
| Tomassoni-Ardori, Francesco et al. [Unknown date]Rbfox1 up-regulation impairs BDNF-dependent hippocampal LTP by dysregulating TrkB isoform expression levels.; Elife, 8: [no pages] |
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GSE136253 |
| Tombari, Camilla et al. (2023) Mutant p53 sustains serine-glycine synthesis and essential amino acids intake promoting breast cancer growth.; Nat Commun, 14: 6777 |
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GSE214493 GSE214492 |
| Tomczak, Kinga K et al. (2004) Expression profiling and identification of novel genes involved in myogenic differentiation.; FASEB J, 18: 403-5 |
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GSE989 GSE990 |
| Tomida, Shuta et al. (2009) Relapse-related molecular signature in lung adenocarcinomas identifies patients with dismal prognosis.; J Clin Oncol, 27: 2793-9 |
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GSE13213 |
| Tomimatsu, Nozomi et al. (2025) Targeting cIAP2 in a novel senolytic strategy prevents glioblastoma recurrence after radiotherapy.; EMBO Mol Med, 17: 645-678 |
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GSE271928 |
| Tomita, Yusuke et al. (2022) A novel mouse model of diffuse midline glioma initiated in neonatal oligodendrocyte progenitor cells highlights cell-of-origin dependent effects of H3K27M.; Glia, 70: 1681-1698 |
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GSE184935 |
| Tomkiewicz, Céline et al. (2012) A head and neck cancer tumor response-specific gene signature for cisplatin, 5-fluorouracil induction chemotherapy fails with added taxanes.; PLoS One, 7: e47170 |
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GSE32877 |
| Tomlinson, Joy E et al. (2018) Temporal changes in macrophage phenotype after peripheral nerve injury.; J Neuroinflammation, 15: 185 |
|
GSE106488 |
| Tommasini, Dario et al. (2023) Alterations in oligodendrocyte transcriptional networks reveal region-specific vulnerabilities to neurological disease.; iScience, 26: 106358 |
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GSE211162 GSE211281.3 GSE211281.2 GSE211281.1 |
| Tomoda, Kiichiro et al. (2012) Derivation conditions impact X-inactivation status in female human induced pluripotent stem cells.; Cell Stem Cell, 11: 91-9 |
|
GSE34527 |
| Tomás, G et al. (2012) A general method to derive robust organ-specific gene expression-based differentiation indices: application to thyroid cancer diagnostic.; Oncogene, 31: 4490-8 |
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GSE33630 GSE29315 |
| Tomé-Carneiro, João et al. (2013) One-year supplementation with a grape extract containing resveratrol modulates inflammatory-related microRNAs and cytokines expression in peripheral blood mononuclear cells of type 2 diabetes and hypertensive patients with coronary artery disease.; Pharmacol Res, 72: 69-82 |
|
GSE36930 |
| Tölgyesi, Gergely et al. (2009) Gene expression profiling of experimental asthma reveals a possible role of paraoxonase-1 in the disease.; Int Immunol, [no vol.]: [no pages] |
|
GSE11911 |
| Tömböl, Zsófia et al. (2009) Integrative molecular bioinformatics study of human adrenocortical tumors: microRNA, tissue-specific target prediction, and pathway analysis.; Endocr Relat Cancer, [no vol.]: [no pages] |
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GSE14922 |