List of all 21,870 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Rouhigharabaei, Leila et al. (2014) Non-IG aberrations of FOXP1 in B-cell malignancies lead to an aberrant expression of N-truncated isoforms of FOXP1.; PLoS One, 9: e85851 |
|
GSE50514 |
| Roukens, M Guy et al. (2010) Control of endothelial sprouting by a Tel-CtBP complex.; Nat Cell Biol, 12: 933-42 |
|
GSE19335 |
| Roura, Adria-Jaume et al. (2023) Regulatory networks driving expression of genes critical for glioblastoma are controlled by the transcription factor c-Jun and the pre-existing epigenetic modifications.; Clin Epigenetics, 15: 29 |
|
GSE206357 |
| Roussarie, Jean-Pierre et al. (2020) Selective Neuronal Vulnerability in Alzheimer's Disease: A Network-Based Analysis.; Neuron, 107: 821-835.e12 |
|
GSE151460.1 GSE151356 GSE151460.2 |
| Rousseaux, Maxime W C et al. (2018) ATXN1-CIC Complex Is the Primary Driver of Cerebellar Pathology in Spinocerebellar Ataxia Type 1 through a Gain-of-Function Mechanism.; Neuron, 97: 1235-1243.e5 |
|
GSE108255 GSE108254 |
| Rousseaux, Sophie et al. (2013) Ectopic activation of germline and placental genes identifies aggressive metastasis-prone lung cancers.; Sci Transl Med, 5: 186ra66 |
|
GSE30219 |
| Roussel, Benoit D et al. (2013) Sterol metabolism regulates neuroserpin polymer degradation in the absence of the unfolded protein response in the dementia FENIB.; Hum Mol Genet, 22: 4616-26 |
|
GSE46230 |
| Roussel-Gervais, Audrey et al. (2023) Genetic knockout ofNTRK2by CRISPR/Cas9 decreases neurogenesis and favors glial progenitors during differentiation of neural progenitor stem cells.; Front Cell Neurosci, 17: 1289966 |
|
GSE242199 |
| Roux, Christelle M et al. (2007) Brucella requires a functional Type IV secretion system to elicit innate immune responses in mice.; Cell Microbiol, 9: 1851-69 |
|
GSE6810 |
| Roux, Lauriane N et al. (2018) Modeling of Aniridia-Related Keratopathy by CRISPR/Cas9 Genome Editing of Human Limbal Epithelial Cells and Rescue by Recombinant PAX6 Protein.; Stem Cells, 36: 1421-1429 |
|
GSE139221 |
| Rovillain, E et al. (2011) Activation of nuclear factor-kappa B signalling promotes cellular senescence.; Oncogene, [no vol.]: [no pages] |
|
GSE24810 |
| Rovsing, Louise et al. (2011) Crx broadly modulates the pineal transcriptome.; J Neurochem, 119: 262-74 |
|
GSE24625 |
| Rowan-Carroll, Andrea et al. (2013) Mice exposed in situ to urban air pollution exhibit pulmonary alterations in gene expression in the lipid droplet synthesis pathways.; Environ Mol Mutagen, 54: 240-9 |
|
GSE41698 |
| Rowe, Wayne B et al. (2007) Hippocampal expression analyses reveal selective association of immediate-early, neuroenergetic, and myelinogenic pathways with cognitive impairment in aged rats.; J Neurosci, 27: 3098-110 |
|
GSE5666 |
| Rowland, Megan E et al. (2023) Systemic and intrinsic functions of ATRX in glial cell fate and CNS myelination in male mice.; Nat Commun, 14: 7090 |
|
GSE210863 |
| Rowlands, David S et al. (2011) Transcriptome and translational signaling following endurance exercise in trained skeletal muscle: impact of dietary protein.; Physiol Genomics, 43: 1004-20 |
|
GSE27285 |
| Rowlands, J Craig et al. (2011) Transcriptional profiles induced by the Aryl Hydrocarbon Receptor agonists 2,3,7,8-tetrachlorodibenzo-p-dioxin, 2,3,7,8-tetrachlorodibenzofuran and 2,3,4,7,8-pentachlorodibenzofuran in primary rat hepatocytes.; Chemosphere, 85: 232-8 |
|
GSE29095 |
| Rowlands, J Craig et al. (2013) A genomics-based analysis of relative potencies of dioxin-like compounds in primary rat hepatocytes.; Toxicol Sci, 136: 595-604 |
|
GSE49473 |
| Roworth, Alice Poppy et al. (2019) Arginine methylation expands the regulatory mechanisms and extends the genomic landscape under E2F control.; Sci Adv, 5: eaaw4640 |
|
GSE111960 |
| Rowton, Megan et al. (2022) Hedgehog signaling activates a mammalian heterochronic gene regulatory network controlling differentiation timing across lineages.; Dev Cell, 57: 2181-2203.e9 |
|
GSE196092 GSE196087 GSE196090 GSE196088 GSE196094 |
| Roy, Achira et al. (2019) PI3K-Yap activity drives cortical gyrification and hydrocephalus in mice.; Elife, 8: [no pages] |
|
GSE127896 |
| Roy, Gitanjali et al. (2025) VDAC1 is a target for pharmacologically induced insulin hypersecretion in β cells.; Cell Rep, 44: 115834 |
|
GSE238017.1 GSE238017.2 GSE238017.3 |
| Roy, Nilotpal et al. (2015) Brg1 promotes both tumor-suppressive and oncogenic activities at distinct stages of pancreatic cancer formation.; Genes Dev, 29: 658-71 |
|
GSE65315.2 |
| Roy, Subhajit et al. (2024) Periodic heat waves-induced neuronal etiology in the elderly is mediated by gut-liver-brain axis: a transcriptome profiling approach.; Sci Rep, 14: 10555 |
|
GSE252887 |
| Roy, Vincent et al. (2022) Moyamoya Disease Susceptibility GeneRNF213Regulates Endothelial Barrier Function.; Stroke, 53: 1263-1275 |
|
GSE183603 |
| Roychoudhuri, Rahul et al. (2013) BACH2 represses effector programs to stabilize T(reg)-mediated immune homeostasis.; Nature, 498: 506-10 |
|
GSE42598 |
| Roychoudhuri, Rahul et al. (2015) Transcriptional profiles reveal a stepwise developmental program of memory CD8(+) T cell differentiation.; Vaccine, 33: 914-23 |
|
GSE42459 |
| Royer-Pokora, Brigitte et al. (2010) Wilms tumor cells with WT1 mutations have characteristic features of mesenchymal stem cells and express molecular markers of paraxial mesoderm.; Hum Mol Genet, 19: 1651-68 |
|
GSE18058 |
| Royer-Pokora, Brigitte et al. (2023) Gene expression studies of WT1 mutant Wilms tumor cell lines in the frame work of published kidney development data reveals their early kidney stem cell origin.; PLoS One, 18: e0270380 |
|
GSE220082 |
| Rozales, Kinneret et al. (2022) Differential roles for DNAJ isoforms in HTT-polyQ and FUS aggregation modulation revealed by chaperone screens.; Nat Commun, 13: 516 |
|
GSE165317 |
| Rozario, Christoforos et al. (2025) Human Rhinovirus 16 impacts cilia structure in 3D cultured primary bronchial epithelial tissue through alternative splicing of host cilia RNAs; bioRxiv, [no vol.]: [no pages] |
|
GSE203428 |
| Rozen, Esteban J et al. (2018) DYRK1A Kinase Positively Regulates Angiogenic Responses in Endothelial Cells.; Cell Rep, 23: 1867-1878 |
|
GSE112172 |
| Rozenbaum, Meir et al. (2018) Translatome Regulation in Neuronal Injury and Axon Regrowth.; eNeuro, 5: [no pages] |
|
GSE110374 GSE102316 |
| Rozenberg, Julian M et al. (2013) Combinatorial recruitment of CREB, C/EBP? and c-Jun determines activation of promoters upon keratinocyte differentiation.; PLoS One, 8: e78179 |
|
GSE48382 |
| Rozovski, Uri et al. (2016) At High Levels, Constitutively Activated STAT3 Induces Apoptosis of Chronic Lymphocytic Leukemia Cells.; J Immunol, 196: 4400-9 |
|
GSE68721 |
| Ru, Dewen et al. (2024) Downregulation of Notch Signaling-Stimulated Genes in Neurovascular Unit Alterations Induced by Chronic Cerebral Hypoperfusion.; Immun Inflamm Dis, 12: e70082 |
|
GSE266214 |
| Rua, Rejane et al. (2019) Infection drives meningeal engraftment by inflammatory monocytes that impairs CNS immunity.; Nat Immunol, 20: 407-419 |
|
GSE108467 GSE108647 |
| Ruan, Jia et al. (2023) Multicenter phase 2 study of oral azacitidine (CC-486) plus CHOP as initial treatment for PTCL.; Blood, 141: 2194-2205 |
|
GSE214980 |
| Ruan, Jimeng et al. (2023) Expression profiles of circular RNAs and interaction networks of competing endogenous RNAs in neurogenic bladder of rats following suprasacral spinal cord injury.; PeerJ, 11: e16042 |
|
GSE227447 |
| Ruan, Jingsong et al. (2025) Screening and identification of muscle pericyte selective markers.; Sci Rep, 15: 28874 |
|
GSE302448 |
| Ruan, Qiu T et al. (2020) 5' UTR variants in the quantitative trait gene Hnrnph1 support reduced 5' UTR usage and hnRNP H protein as a molecular mechanism underlying reduced methamphetamine sensitivity.; FASEB J, 34: 9223-9244 |
|
GSE76929 |
| Ruano, Juan et al. (2016) Molecular and Cellular Profiling of Scalp Psoriasis Reveals Differences and Similarities Compared to Skin Psoriasis.; PLoS One, 11: e0148450 |
|
GSE75343 |
| Ruau, David et al. (2008) Pluripotency associated genes are reactivated by chromatin-modifying agents in neurosphere cells.; Stem Cells, 26: 920-6 |
|
GSE587 GSE2375 |
| Rube, H Tomas et al. (2016) Sequence features accurately predict genome-wide MeCP2 binding in vivo.; Nat Commun, 7: 11025 |
|
GSE71126 |
| Ruberti, S et al. (2018) Involvement of MAF/SPP1 axis in the development of bone marrow fibrosis in PMF patients.; Leukemia, 32: 438-449 |
|
GSE85190 |
| Rubin, Brian P et al. (2011) Evidence for an unanticipated relationship between undifferentiated pleomorphic sarcoma and embryonal rhabdomyosarcoma.; Cancer Cell, 19: 177-91 |
|
GSE22520 |
| Rubin, Carol M et al. (2011) Mouse mutants for the nicotinic acetylcholine receptor ß2 subunit display changes in cell adhesion and neurodegeneration response genes.; PLoS One, 6: e18626 |
|
GSE22824 |
| Rubino, Stephen J et al. (2018) Acute microglia ablation induces neurodegeneration in the somatosensory system.; Nat Commun, 9: 4578 |
|
GSE115447 |
| Rubio, Carolina et al. (2019) CDK4/6 Inhibitor as a Novel Therapeutic Approach for Advanced Bladder Cancer Independently ofRB1Status.; Clin Cancer Res, 25: 390-402 |
|
GSE100716 |
| Rubio, Claudia A et al. (2014) Transcriptome-wide characterization of the eIF4A signature highlights plasticity in translation regulation.; Genome Biol, 15: 476 |
|
GSE61375.1 |
| Rudenko, Andrii et al. (2013) Tet1 is critical for neuronal activity-regulated gene expression and memory extinction.; Neuron, 79: 1109-1122 |
|
GSE48789 |
| Rudibaugh, Thomas T et al. (2023) Reactive Oxygen Species Mediate Transcriptional Responses to Dopamine and Cocaine in Human Cerebral Organoids.; bioRxiv, [no vol.]: [no pages] |
|
GSE234766 GSE234767 |
| Rudic, R Daniel et al. (2005) Bioinformatic analysis of circadian gene oscillation in mouse aorta.; Circulation, 112: 2716-24 |
|
GSE414 |
| Rudler, Danielle L et al. (2026) Specific SLC25 carriers regulate mitochondrial protein synthesis.; Sci Adv, 12: eaeb0049 |
|
GSE304693 |
| Rudnick, Noam D et al. (2017) Distinct roles for motor neuron autophagy early and late in the SOD1G93Amouse model of ALS.; Proc Natl Acad Sci U S A, 114: E8294-E8303 |
|
GSE100888 |
| Rudolph, Michael C et al. (2007) Metabolic regulation in the lactating mammary gland: a lipid synthesizing machine.; Physiol Genomics, 28: 323-36 |
|
GSE4222 |
| Rudqvist, Nils et al. (2015) Transcriptional Response in Mouse Thyroid Tissue after 211At Administration: Effects of Absorbed Dose, Initial Dose-Rate and Time after Administration.; PLoS One, 10: e0131686 |
|
GSE66089 |
| Rudra, Dipayan et al. (2012) Transcription factor Foxp3 and its protein partners form a complex regulatory network.; Nat Immunol, 13: 1010-9 |
|
GSE39864 |
| Ruebel, Meghan L et al. (2023) Maternal Exercise Prior to and during Gestation Induces Sex-Specific Alterations in the Mouse Placenta.; Int J Mol Sci, 24: [no pages] |
|
GSE243228 |
| Ruetz, Tyson et al. (2017) Constitutively Active SMAD2/3 Are Broad-Scope Potentiators of Transcription-Factor-Mediated Cellular Reprogramming.; Cell Stem Cell, 21: 791-805.e9 |
|
GSE72596 |
| Rufo, Nicole et al. (2022) Stress-induced inflammation evoked by immunogenic cell death is blunted by the IRE1α kinase inhibitor KIRA6 through HSP60 targeting.; Cell Death Differ, 29: 230-245 |
|
GSE163377 |
| Ruggiero, Carmen et al. (2023) FSCN1 as a new druggable target in adrenocortical carcinoma.; Int J Cancer, 153: 210-223 |
|
GSE216008 |
| Rui, Lixin et al. (2010) Cooperative epigenetic modulation by cancer amplicon genes.; Cancer Cell, 18: 590-605 |
|
GSE20988 |
| Ruike, Yoshinao et al. (2008) Global correlation analysis for micro-RNA and mRNA expression profiles in human cell lines.; J Hum Genet, 53: 515-23 |
|
GSE10021 |
| Ruiz, E Josue et al. (2021) JunD, not c-Jun, is the AP-1 transcription factor required for Ras-induced lung cancer.; JCI Insight, 6: [no pages] |
|
GSE87387 |
| Ruiz, Florian et al. (2023) Endothelial cell-derived oxysterol ablation attenuates experimental autoimmune encephalomyelitis.; EMBO Rep, 24: e55328 |
|
GSE217431 |
| Ruiz-Cantero, M Carmen et al. (2024) Sigma-1 Receptors Control Neuropathic Pain and Peripheral Neuroinflammation After Nerve Injury in Female Mice: A Transcriptomic Study.; J Neuroimmune Pharmacol, 19: 46 |
|
GSE241361 |
| Ruiz-Uribe, Nancy E et al. (2023) Vascular oxidative stress causes neutrophil arrest in brain capillaries, leading to decreased cerebral blood flow and contributing to memory impairment in a mouse model of Alzheimer’s disease.; bioRxiv, [no vol.]: [no pages] |
|
GSE224394 |
| Rumman, Mohammad et al. (2018) Induction of quiescence (G0) in bone marrow stromal stem cells enhances their stem cell characteristics.; Stem Cell Res, 30: 69-80 |
|
GSE60608 |
| Runge, Karen et al. (2021) Disruption of NEUROD2 causes a neurodevelopmental syndrome with autistic features via cell-autonomous defects in forebrain glutamatergic neurons.; Mol Psychiatry, 26: 6125-6148 |
|
GSE110491 |
| Runne, Heike et al. (2007) Analysis of potential transcriptomic biomarkers for Huntington's disease in peripheral blood.; Proc Natl Acad Sci U S A, 104: 14424-9 |
|
GSE8762 |
| Runne, Heike et al. (2008) Dysregulation of gene expression in primary neuron models of Huntington's disease shows that polyglutamine-related effects on the striatal transcriptome may not be dependent on brain circuitry.; J Neurosci, 28: 9723-31 |
|
GSE1918 GSE12481 |
| Running, Logan et al. (2024) Investigating the Mechanism of Neurotoxic Effects of PFAS in Differentiated Neuronal Cells through Transcriptomics and Lipidomics Analysis.; ACS Chem Neurosci, 15: 4568-4579 |
|
GSE254408 |
| Ruotsalainen, J J et al. (2015) Clonal variation in interferon response determines the outcome of oncolytic virotherapy in mouse CT26 colon carcinoma model.; Gene Ther, 22: 65-75 |
|
GSE53001 |
| Ruppert, Philip M M et al. (2026) Dietary sulfur amino acid restriction elicits a cold-like transcriptional response in inguinal but not epididymal white adipose tissue of male mice.; Elife, 14: [no pages] |
|
GSE310044 |
| Rupprecht, Jesse et al. (2024) Transcription Factors Sox2 and Sox3 Directly Regulate the Expression of Genes Involved in the Onset of Oligodendrocyte Differentiation.; Cells, 13: [no pages] |
|
GSE263925 |
| Rusch, Heather L et al. (2019) Gene expression differences in PTSD are uniquely related to the intrusion symptom cluster: A transcriptome-wide analysis in military service members.; Brain Behav Immun, 80: 904-908 |
|
GSE81761 |
| Rusli, Fenni et al. (2015) A weekly alternating diet between caloric restriction and medium fat protects the liver from fatty liver development in middle-aged C57BL/6J mice.; Mol Nutr Food Res, 59: 533-43 |
|
GSE61233 |
| Russ, Anna E et al. (2013) Gene expression changes in the colon epithelium are similar to those of intact colon during late inflammation in interleukin-10 gene deficient mice.; PLoS One, 8: e63251 |
|
GSE39859 |
| Russ, Jeffrey B et al. (2015) Misexpression of ptf1a in cortical pyramidal cells in vivo promotes an inhibitory peptidergic identity.; J Neurosci, 35: 6028-37 |
|
GSE59481 |
| Russ, Kaspar et al. (2021) TNF-? and ?-synuclein fibrils differently regulate human astrocyte immune reactivity and impair mitochondrial respiration.; Cell Rep, 34: 108895 |
|
GSE166768 GSE166769 |
| Rübsamen, Daniela et al. (2012) IRES-dependent translation of egr2 is induced under inflammatory conditions.; RNA, 18: 1910-20 |
|
GSE35022 |
| Rückerl, Dominik et al. (2017) Macrophage origin limits functional plasticity in helminth-bacterial co-infection.; PLoS Pathog, 13: e1006233 |
|
GSE85805 |
| Rücklé, Cornelia et al. (2023) RNA stability controlled by m6A methylation contributes to X-to-autosome dosage compensation in mammals.; Nat Struct Mol Biol, 30: 1207-1215 |
|
GSE203642.2 GSE203642.1 |