List of all 21,870 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Russell, Chris B et al. (2014) Gene expression profiles normalized in psoriatic skin by treatment with brodalumab, a human anti-IL-17 receptor monoclonal antibody.; J Immunol, 192: 3828-36 |
|
GSE53552 |
| Russell, Meaghan K et al. (2012) Congenital diaphragmatic hernia candidate genes derived from embryonic transcriptomes.; Proc Natl Acad Sci U S A, 109: 2978-83 |
|
GSE35243 |
| Russell, Shannon L et al. (2019) Compromised Metabolic Reprogramming Is an Early Indicator of CD8+T Cell Dysfunction during Chronic Mycobacterium tuberculosis Infection.; Cell Rep, 29: 3564-3579.e5 |
|
GSE117330 |
| Russier, Marion et al. (2025) Differential cell survival outcomes in response to diverse amino acid stress.; Life Sci Alliance, 8: [no pages] |
|
GSE291532 |
| Russo, Isabella et al. (2019) Transcriptome analysis of LRRK2 knock-out microglia cells reveals alterations of inflammatory- and oxidative stress-related pathways upon treatment with α-synuclein fibrils.; Neurobiol Dis, 129: 67-78 |
|
GSE186483 |
| Russo, Jose et al. (2012) Pregnancy-induced chromatin remodeling in the breast of postmenopausal women.; Int J Cancer, 131: 1059-70 |
|
GSE26457 |
| Rustenhoven, Justin et al. (2023) Age-related alterations in meningeal immunity drive impaired CNS lymphatic drainage.; J Exp Med, 220: [no pages] |
|
GSE217276 |
| Rusu, Bianca et al. (2023) Single-Nucleus Profiling Identifies Accelerated Oligodendrocyte Precursor Cell Senescence in a Mouse Model of Down Syndrome.; eNeuro, 10: [no pages] |
|
GSE225554 |
| Rutar, Matt et al. (2011) Analysis of complement expression in light-induced retinal degeneration: synthesis and deposition of C3 by microglia/macrophages is associated with focal photoreceptor degeneration.; Invest Ophthalmol Vis Sci, 52: 5347-58 |
|
GSE22818 |
| Rutgersson, Carolin et al. (2013) Oral exposure to industrial effluent with exceptionally high levels of drugs does not indicate acute toxic effects in rats.; Environ Toxicol Chem, 32: 577-84 |
|
GSE23983 |
| Rutherford, Robert M et al. (2004) Functional genomics and prognosis in sarcoidosis--the critical role of antigen presentation.; Sarcoidosis Vasc Diffuse Lung Dis, 21: 10-8 |
|
GSE1907 |
| Ruzicka, W Brad et al. (2024) Single-cell multi-cohort dissection of the schizophrenia transcriptome.; Science, 384: eadg5136 |
|
SZBDMulti-Seq CMC |
| Ruzycki, Philip A et al. (2015) Graded gene expression changes determine phenotype severity in mouse models of CRX-associated retinopathies.; Genome Biol, 16: 171 |
|
GSE65506 |
| Ryan, Bríd M et al. (2014) Germline variation in NCF4, an innate immunity gene, is associated with an increased risk of colorectal cancer.; Int J Cancer, 134: 1399-407 |
|
GSE44861 |
| Ryan, C W et al. (2024) RING1 missense variants reveal sensitivity of DNA damage repair to H2A monoubiquitination dosage during neurogenesis.; Nat Commun, 15: 7931 |
|
GSE252447 |
| Ryan, Christine B et al. (2024) PI3K signaling promotes formation of lipid-laden foamy macrophages at the spinal cord injury site.; Neurobiol Dis, 190: 106370 |
|
GSE237511 |
| Ryan, D P et al. (2018) A paternal methyl donor-rich diet altered cognitive and neural functions in offspring mice.; Mol Psychiatry, 23: 1345-1355 |
|
GSE90158 |
| Ryan, Dorothy M et al. (2014) Smoking dysregulates the human airway basal cell transcriptome at COPD risk locus 19q13.2.; PLoS One, 9: e88051 |
|
GSE47718 |
| Ryan, M M et al. (2006) Gene expression analysis of bipolar disorder reveals downregulation of the ubiquitin cycle and alterations in synaptic genes.; Mol Psychiatry, 11: 965-78 |
|
GSE5389 GSE5388 |
| Ryan, Scott D et al. (2012) Microtubule stability, Golgi organization, and transport flux require dystonin-a2-MAP1B interaction.; J Cell Biol, 196: 727-42 |
|
GSE30960 |
| Ryan, Scott D et al. (2013) Isogenic Human iPSC Parkinson's Model Shows Nitrosative Stress-Induced Dysfunction in MEF2-PGC1? Transcription.; Cell, 155: 1351-64 |
|
GSE46798 |
| Ryan, Sean K et al. (2020) Neuroinflammation and EIF2 Signaling Persist despite Antiretroviral Treatment in an hiPSC Tri-culture Model of HIV Infection.; Stem Cell Reports, 14: 703-716 |
|
GSE143685 |
| Ryan, Weston Kenneth et al. (2019) Activation of S6 signaling is associated with cell survival and multinucleation in hyperplastic skin after epidermal loss of AURORA-A Kinase.; Cell Death Differ, 26: 548-564 |
|
GSE106281 |
| Ryan, Zachary C et al. (2016) 1α,25-Dihydroxyvitamin D3 Regulates Mitochondrial Oxygen Consumption and Dynamics in Human Skeletal Muscle Cells.; J Biol Chem, 291: 1514-28 |
|
GSE68323 |
| Ryan, Zachary C et al. (2018) 1α,25-dihydroxyvitamin D3mitigates cancer cell mediated mitochondrial dysfunction in human skeletal muscle cells.; Biochem Biophys Res Commun, 496: 746-752 |
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GSE103549 |
| Rybak-Wolf, Agnieszka et al. (2015) Circular RNAs in the Mammalian Brain Are Highly Abundant, Conserved, and Dynamically Expressed.; Mol Cell, 58: 870-85 |
|
GSE65926.1 GSE65926.2 |
| Rydzanicz, Małgorzata et al. (2024) Mutation in the mitochondrial chaperone TRAP1 leads to autism with more severe symptoms in males.; EMBO Mol Med, 16: 2976-3004 |
|
GSE226319 |
| Ryge, Jesper et al. (2008) Gene expression profiling of two distinct neuronal populations in the rodent spinal cord.; PLoS One, 3: e3415 |
|
GSE9439 |
| Ryge, Jesper et al. (2010) Transcriptional regulation of gene expression clusters in motor neurons following spinal cord injury.; BMC Genomics, 11: 365 |
|
GSE19701 |
| Ryl, Tatsiana et al. (2017) Cell-Cycle Position of Single MYC-Driven Cancer Cells Dictates Their Susceptibility to a Chemotherapeutic Drug.; Cell Syst, 5: 237-250.e8 |
|
GSE98274 GSE97774.2 |
| Rysä, Jaana et al. (2005) Distinct upregulation of extracellular matrix genes in transition from hypertrophy to hypertensive heart failure.; Hypertension, 45: 927-33 |
|
GSE2116 |
| Ryu, Hyun-Hee et al. (2019) Excitatory neuron-specific SHP2-ERK signaling network regulates synaptic plasticity and memory.; Sci Signal, 12: [no pages] |
|
GSE104089 |
| Ryu, Jae Kyu et al. (2018) Fibrin-targeting immunotherapy protects against neuroinflammation and neurodegeneration.; Nat Immunol, 19: 1212-1223 |
|
GSE118920 |
| Ryu, Ji Eun et al. (2024) Circadian regulation of endoplasmic reticulum calcium response in cultured mouse astrocytes.; Elife, 13: [no pages] |
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GSE254678 |
| Ryu, Keun Woo et al. (2018) Metabolic regulation of transcription through compartmentalized NAD+biosynthesis.; Science, 360: [no pages] |
|
GSE96764 |
| Ryu, Moon-Suhn et al. (2011) Genomic analysis, cytokine expression, and microRNA profiling reveal biomarkers of human dietary zinc depletion and homeostasis.; Proc Natl Acad Sci U S A, 108: 20970-5 |
|
GSE33174 |
| Ryu, Ri et al. (2019) Chrysanthemum Leaf Ethanol Extract Prevents Obesity and Metabolic Disease in Diet-Induced Obese Mice via Lipid Mobilization in White Adipose Tissue.; Nutrients, 11: [no pages] |
|
GSE130218 |
| Rzasa, Paulina et al. (2023) BRAFV600E-mutated serrated colorectal neoplasia drives transcriptional activation of cholesterol metabolism.; Commun Biol, 6: 962 |
|
GSE234372 |
| Rzymski, Tomasz et al. (2017) SEL120-34A is a novel CDK8 inhibitor active in AML cells with high levels of serine phosphorylation of STAT1 and STAT5 transactivation domains.; Oncotarget, 8: 33779-33795 |
|
GSE77987 |
| Rønholt, Kirsten et al. (2020) IL-37 Expression Is Downregulated in Lesional Psoriasis Skin.; Immunohorizons, 4: 754-761 |
|
GSE161683 |
| Saad, Mohamed I et al. (2022) Blockade of the protease ADAM17 ameliorates experimental pancreatitis.; Proc Natl Acad Sci U S A, 119: e2213744119 |
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GSE214666 |
| Saal, Lena et al. (2014) Subcellular transcriptome alterations in a cell culture model of spinal muscular atrophy point to widespread defects in axonal growth and presynaptic differentiation.; RNA, 20: 1789-802 |
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GSE59506 |
| Saaoud, Fatma et al. (2024) Organelle stresses and energetic metabolisms promote endothelial-to-mesenchymal transition and fibrosis via upregulating FOSB and MEOX1 in Alzheimer's disease.; Front Mol Neurosci, 18: 1605012 |
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GSE305112 |
| Saavedra-Almarza, Juan et al. (2026) Contrasting functions of CD73 and adenosine in CD8+ T-cell exhaustion during antitumor immunity.; Oncoimmunology, 15: 2642458 |
|
GSE298159 |
| Saavedra-García, Paula et al. (2021) Systems level profiling of chemotherapy-induced stress resolution in cancer cells reveals druggable trade-offs.; Proc Natl Acad Sci U S A, 118: [no pages] |
|
GSE158387 |
| Saba, Nakhle S et al. (2016) Pathogenic role of B-cell receptor signaling and canonical NF-κB activation in mantle cell lymphoma.; Blood, 128: 82-92 |
|
GSE70910 |
| Sabarwal, Akash et al. (2025) Targeting AXL can effectively overcome c-Met-induced therapeutic resistance in renal cancer and promote tumor cell death through increased oxidative stress.; Cancer Lett, 633: 217984 |
|
GSE296078 |
| Sabates-Bellver, Jacob et al. (2007) Transcriptome profile of human colorectal adenomas.; Mol Cancer Res, 5: 1263-75 |
|
GSE8671 |
| Sabatier, Marie et al. (2023) C/EBPα Confers Dependence to Fatty Acid Anabolic Pathways and Vulnerability to Lipid Oxidative Stress-Induced Ferroptosis in FLT3-Mutant Leukemia.; Cancer Discov, 13: 1720-1747 |
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GSE226414 |
| Sabatier, Renaud et al. (2011) Down-regulation of ECRG4, a candidate tumor suppressor gene, in human breast cancer.; PLoS One, 6: e27656 |
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GSE21653 GSE31448 |
| Sabatini, Paul V et al. (2021) GFRAL-expressing neurons suppress food intake via aversive pathways.; Proc Natl Acad Sci U S A, 118: [no pages] |
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GSE160257 |
| Sabbagh, Mark F et al. (2020) A genome-wide view of the de-differentiation of central nervous system endothelial cells in culture.; Elife, 9: [no pages] |
|
GSE118731 |
| Saber, Anne T et al. (2009) Lack of acute phase response in the livers of mice exposed to diesel exhaust particles or carbon black by inhalation.; Part Fibre Toxicol, 6: 12 |
|
GSE11346 |
| Sabogal-Guáqueta, Angélica María et al. (2023) Species-specific metabolic reprogramming in human and mouse microglia during inflammatory pathway induction.; Nat Commun, 14: 6454 |
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GSE221013.2 GSE221013.1 |
| Sabour, Davood et al. (2011) Identification of genes specific to mouse primordial germ cells through dynamic global gene expression.; Hum Mol Genet, 20: 115-25 |
|
GSE23322 |
| Sabulski, Anthony et al. (2023) Mechanisms of endothelial injury and transplant-associated thrombotic microangiopathy in tandem autologous hematopoietic stem cell transplant for neuroblastoma.; Haematologica, 108: 3449-3453 |
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GSE227176 |
| Sabò, Arianna et al. (2014) Selective transcriptional regulation by Myc in cellular growth control and lymphomagenesis.; Nature, 511: 488-92 |
|
GSE51008 |
| Sachindra, Larribère, Lionel et al. (2017) New role of ID3 in melanoma adaptive drug-resistance.; Oncotarget, 8: 110166-110175 |
|
GSE104849 |
| Sad, Kirti et al. (2025) Histone H3E50K remodels chromatin to confer oncogenic activity and support an EMT phenotype.; NAR Cancer, 7: zcaf002 |
|
GSE246607 |
| Sadahiro, Taketaro et al. (2018) Tbx6 Induces Nascent Mesoderm from Pluripotent Stem Cells and Temporally Controls Cardiac versus Somite Lineage Diversification.; Cell Stem Cell, 23: 382-395.e5 |
|
GSE89820 |
| Sadakata, Mizuki et al. (2024) Maternal immunoglobulin G affects brain development of mouse offspring.; J Neuroinflammation, 21: 114 |
|
GSE248310 |
| Sadanandam, Anguraj et al. (2015) A Cross-Species Analysis in Pancreatic Neuroendocrine Tumors Reveals Molecular Subtypes with Distinctive Clinical, Metastatic, Developmental, and Metabolic Characteristics.; Cancer Discov, 5: 1296-313 |
|
GSE73514 |
| Sadanandan, Jayanarayanan et al. (2024) Key epigenetic and signaling factors in the formation and maintenance of the blood-brain barrier.; Elife, 12: [no pages] |
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GSE214923 GSE273880 GSE255967 |
| Sadasivan, Shankar et al. (2012) Methylphenidate exposure induces dopamine neuron loss and activation of microglia in the basal ganglia of mice.; PLoS One, 7: e33693 |
|
GSE33619 |
| Sadi, Al Muktafi et al. (2011) Clinical relevance of DNA microarray analyses using archival formalin-fixed paraffin-embedded breast cancer specimens.; BMC Cancer, 11: 253:1-13 |
|
GSE23384 GSE23385 |
| Sadick, Jessica S et al. (2022) Astrocytes and oligodendrocytes undergo subtype-specific transcriptional changes in Alzheimer's disease.; Neuron, 110: 1788-1805.e10 |
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GSE167492 GSE167490 |
| Sadik, Ahmed et al. (2020) IL4I1 Is a Metabolic Immune Checkpoint that Activates the AHR and Promotes Tumor Progression.; Cell, 182: 1252-1270.e34 |
|
GSE149846 |
| Sadler, Rebecca et al. (2020) Short-Chain Fatty Acids Improve Poststroke Recovery via Immunological Mechanisms.; J Neurosci, 40: 1162-1173 |
|
GSE131788 |
| Sadri-Vakili, Ghazaleh et al. (2007) Histones associated with downregulated genes are hypo-acetylated in Huntington's disease models.; Hum Mol Genet, 16: 1293-306 |
|
GSE11358 |
| Saeki, Keita et al. (2023) IRF8 configures enhancer landscape in postnatal microglia and directs microglia specific transcriptional programs.; bioRxiv, [no vol.]: [no pages] |
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GSE231403.3 GSE231403.1 GSE231403.2 |
| Saeki, Keita et al. (2024) IRF8 defines the epigenetic landscape in postnatal microglia, thereby directing their transcriptome programs.; Nat Immunol, 25: 1928-1942 |
|
GSE266422 |
| Saeki, Tsubasa et al. (2022) Critical roles of FGF, RA, and WNT signalling in the development of the human otic placode and subsequent lineages in a dish.; Regen Ther, 20: 165-186 |
|
GSE175998 |
| Saeki, Yuko et al. (2009) Ligand-specific sequential regulation of transcription factors for differentiation of MCF-7 cells.; BMC Genomics, 10: 545 |
|
GSE13009 |
| Saenz, D T et al. (2017) Novel BET protein proteolysis-targeting chimera exerts superior lethal activity than bromodomain inhibitor (BETi) against post-myeloproliferative neoplasm secondary (s) AML cells.; Leukemia, 31: 1951-1961 |
|
GSE93578 |
| Saenz-Antoñanzas, Ander et al. (2024) Centenarian hippocampus displays high levels of astrocytic metallothioneins.; Aging Cell, 23: e14201 |
|
GSE201118 |
| Saer, Benjamin et al. (2024) Dietary methionine/choline deficiency affects behavioural and molecular circadian rhythms; bioRxiv, [no vol.]: [no pages] |
|
GSE252364 |
| Safari, Maryam et al. (2023) Novel Therapeutic Strategies Exploiting the Unique Properties of Neuroendocrine Neoplasms.; Cancers (Basel), 15: [no pages] |
|
GSE216537 |
| Sagar, Ram et al. (2023) Excitatory Neurons Derived from Human-Induced Pluripotent Stem Cells Show Transcriptomic Differences in Alzheimer's Patients from Controls.; Cells, 12: [no pages] |
|
GSE260873 |
| Saghi, Mostafa et al. (2022) Intellectual disability associated with craniofacial dysmorphism due to POLR3B mutation and defect in spliceosomal machinery.; BMC Med Genomics, 15: 89 |
|
GSE184234 |
| Sah, Bindeshwar et al. (2025) Loss of CELF2 promotes skin tumorigenesis and increases drug resistance.; Int J Dermatol, 64: 101-110 |
|
GSE244862 |
| Saha, Nirmalya et al. (2019) The PAF1c Subunit CDC73 Is Required for Mouse Hematopoietic Stem Cell Maintenance but Displays Leukemia-Specific Gene Regulation.; Stem Cell Reports, 12: 1069-1083 |
|
GSE117749 |
| Saha, Piyali et al. (2024) Early modulation of the gut microbiome by female sex hormones alters amyloid pathology and microglial function.; Sci Rep, 14: 1827 |
|
GSE245831 |
| Saha, Ramendra N et al. (2011) Rapid activity-induced transcription of Arc and other IEGs relies on poised RNA polymerase II.; Nat Neurosci, 14: 848-56 |
|
GSE22622 |
| Saha, Sukumar et al. (2010) Peptidoglycan recognition proteins protect mice from experimental colitis by promoting normal gut flora and preventing induction of interferon-gamma.; Cell Host Microbe, 8: 147-62 |
|
GSE18859 |
| Sahinyan, Korin et al. (2025) REST/NRSF Preserves muscle stem cell identity by repressing alternate cell fate.; Nat Commun, 16: 7487 |
|
GSE266726 |
| Sahni, Jennifer M et al. (2017) Mitotic Vulnerability in Triple-Negative Breast Cancer Associated with LIN9 Is Targetable with BET Inhibitors.; Cancer Res, 77: 5395-5408 |
|
GSE79332 |
| Sahni, Vibhu et al. (2021) Corticospinal neuron subpopulation-specific developmental genes prospectively indicate mature segmentally specific axon projection targeting.; Cell Rep, 37: 109843 |
|
GSE77311 |
| Sáenz, Amets et al. (2008) Gene expression profiling in limb-girdle muscular dystrophy 2A.; PLoS One, 3: e3750 |
|
GSE11681 |