List of all 16,773 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Tommasini, Dario et al. (2023) Alterations in oligodendrocyte transcriptional networks reveal region-specific vulnerabilities to neurological disease.; iScience, 26: 106358 |
|
GSE211281.3 GSE211281.2 GSE211281.1 |
| Tomoda, Kiichiro et al. (2012) Derivation conditions impact X-inactivation status in female human induced pluripotent stem cells.; Cell Stem Cell, 11: 91-9 |
|
GSE34527 |
| Tone, Alicia A et al. (2008) Gene expression profiles of luteal phase fallopian tube epithelium from BRCA mutation carriers resemble high-grade serous carcinoma.; Clin Cancer Res, 14: 4067-78 |
|
GSE10971 |
| Tone, Mitsuyo et al. (2020) HTR3A is correlated with unfavorable histology and promotes proliferation through ERK phosphorylation in lung adenocarcinoma.; Cancer Sci, 111: 3953-3961 |
|
GSE148801 |
| Tonelli, Claudia et al. (2024) A mucus production programme promotes classical pancreatic ductal adenocarcinoma.; Gut, [no vol.]: [no pages] |
|
GSE195502 |
| Tonevitsky, Alexander G et al. (2013) Dynamically regulated miRNA-mRNA networks revealed by exercise.; BMC Physiol, 13: 9 |
|
GSE46075 |
| Tong, Jianbin et al. (2013) Expression of ALS-linked TDP-43 mutant in astrocytes causes non-cell-autonomous motor neuron death in rats.; EMBO J, 32: 1917-26 |
|
GSE42091 |
| Tong, Louis et al. (2009) Comparison of gene expression profiles of conjunctival cell lines with primary cultured conjunctival epithelial cells and human conjunctival tissue.; Gene Expr, 14: 265-78 |
|
GSE8633 |
| Tong, Man et al. (2012) Rab25 is a tumor suppressor gene with antiangiogenic and anti-invasive activities in esophageal squamous cell carcinoma.; Cancer Res, 72: 6024-35 |
|
GSE32424 |
| Tong, Zhi-Bin et al. (2020) The MT1G Gene in LUHMES Neurons Is a Sensitive Biomarker of Neurotoxicity.; Neurotox Res, 38: 967-978 |
|
GSE150005 |
| Tonglin, Hu et al. (2021) Single-Cell RNA-Seq of Bone Marrow Cells in Aplastic Anemia.; Front Genet, 12: 745483 |
|
GSE181989 |
| Tooker, Patricia et al. (2007) Bexarotene (LGD1069, Targretin), a selective retinoid X receptor agonist, prevents and reverses gemcitabine resistance in NSCLC cells by modulating gene amplification.; Cancer Res, 67: 4425-33 |
|
GSE6914 |
| Tooley, Kyla B et al. (2023) Differential usage of DNA modifications in neurons, astrocytes, and microglia.; Epigenetics Chromatin, 16: 45 |
|
GSE228043 |
| Toonen, Erik J M et al. (2012) Validation study of existing gene expression signatures for anti-TNF treatment in patients with rheumatoid arthritis.; PLoS One, 7: e33199 |
|
GSE33377 |
| Toonen, Lodewijk J A et al. [Unknown date]Transcriptional profiling and biomarker identification reveal tissue specific effects of expanded ataxin-3 in a spinocerebellar ataxia type 3 mouse model.; Mol Neurodegener, 13: 31 |
|
GSE108069 GSE107958 |
| Topham, Caroline et al. (2015) MYC Is a Major Determinant of Mitotic Cell Fate.; Cancer Cell, 28: 129-40 |
|
GSE68219 |
| Topol, Aaron et al. (2015) Altered WNT Signaling in Human Induced Pluripotent Stem Cell Neural Progenitor Cells Derived from Four Schizophrenia Patients.; Biol Psychiatry, 78: e29-34 |
|
GSE63738 |
| Topol, Aaron et al. [Unknown date]Dysregulation of miRNA-9 in a Subset of Schizophrenia Patient-Derived Neural Progenitor Cells.; Cell Rep, 15: 1024-1036 |
|
GSE63734 GSE80170 |
| Torcal Garcia, Guillem et al. (2023) Carm1-arginine methylation of the transcription factor C/EBPα regulates transdifferentiation velocity.; Elife, 12: [no pages] |
|
GSE204745 |
| Toren, Eliana et al. (2023) The SSBP3 co-regulator is required for glucose homeostasis, pancreatic islet architecture, and beta-cell identity.; Mol Metab, 76: 101785 |
|
GSE232750 |
| Torensma, Ruurd et al. (2013) The impact of cell source, culture methodology, culture location, and individual donors on gene expression profiles of bone marrow-derived and adipose-derived stromal cells.; Stem Cells Dev, 22: 1086-96 |
|
GSE42245 |
| Toriseva, Mervi et al. (2012) MMP-13 regulates growth of wound granulation tissue and modulates gene expression signatures involved in inflammation, proteolysis, and cell viability.; PLoS One, 7: e42596 |
|
GSE38822 |
| Tornack, Julia et al. (2013) Ectopic Runx1 expression rescues Tal-1-deficiency in the generation of primitive and definitive hematopoiesis.; PLoS One, 8: e70116 |
|
GSE46970 |
| Toro, Carlos A et al. (2023) Boldine modulates glial transcription and functional recovery in a murine model of contusion spinal cord injury.; Front Cell Neurosci, 17: 1163436 |
|
GSE220907 |
| Toro, Carlos A et al. (2023) Synaptojanin 1 Modulates Functional Recovery After Incomplete Spinal Cord Injury in Male Apolipoprotein E Epsilon 4 Mice.; Neurotrauma Rep, 4: 464-477 |
|
GSE227291 |
| Toro, Carlos A et al. [Unknown date]Trithorax dependent changes in chromatin landscape at enhancer and promoter regions drive female puberty.; Nat Commun, 9: 57 |
|
GSE94080 |
| Toropainen, Sari et al. (2015) SUMO ligase PIAS1 functions as a target gene selective androgen receptor coregulator on prostate cancer cell chromatin.; Nucleic Acids Res, 43: 848-61 |
|
GSE30316 |
| Torre, Sabrina et al. [Unknown date]USP15 regulates type I interferon response and is required for pathogenesis of neuroinflammation.; Nat Immunol, 18: 54-63 |
|
GSE79702 |
| Torrecilla, Sara et al. (2017) Trunk mutational events present minimal intra- and inter-tumoral heterogeneity in hepatocellular carcinoma.; J Hepatol, 67: 1222-1231 |
|
GSE102383 GSE102451 |
| Torrence, Margaret E et al. (2021) The mTORC1-mediated activation of ATF4 promotes protein and glutathione synthesis downstream of growth signals.; Elife, 10: [no pages] |
|
GSE158605 |
| Torres, Teresa et al. (2020) Response to fluoxetine in children and adolescents: a weighted gene co-expression network analysis of peripheral blood.; Am J Transl Res, 12: 2028-2040 |
|
GSE128387 |
| Torres-Espín, Abel et al. (2013) Gene expression changes in the injured spinal cord following transplantation of mesenchymal stem cells or olfactory ensheathing cells.; PLoS One, 8: e76141 |
|
GSE46988 |
| Torres-Martin, Miguel et al. (2013) Microarray analysis of gene expression in vestibular schwannomas reveals SPP1/MET signaling pathway and androgen receptor deregulation.; Int J Oncol, 42: 848-62 |
|
GSE39645 |
| Torres-Martin, Miguel et al. (2014) Global expression profile in low grade meningiomas and schwannomas shows upregulation of PDGFD, CDH1 and SLIT2 compared to their healthy tissue.; Oncol Rep, 32: 2327-34 |
|
GSE54934 |
| Torres-Mejía, Elen et al. (2020) Sox2 controls Schwann cell self-organization through fibronectin fibrillogenesis.; Sci Rep, 10: 1984 |
|
GSE94590 |
| Toscano, Christopher D et al. (2007) Differential gene expression patterns in cyclooxygenase-1 and cyclooxygenase-2 deficient mouse brain.; Genome Biol, 8: R14 |
|
GSE5342 |
| Tosic, Milica et al. (2018) Lsd1 regulates skeletal muscle regeneration and directs the fate of satellite cells.; Nat Commun, 9: 366 |
|
GSE98133 |
| Tosini, Gianluca et al. (2007) Clock gene expression in the rat retina: effects of lighting conditions and photoreceptor degeneration.; Brain Res, 1159: 134-40 |
|
GSE2868 |
| Toskas, Konstantinos et al. (2022) PRC2-mediated repression is essential to maintain identity and function of differentiated dopaminergic and serotonergic neurons.; Sci Adv, 8: eabo1543 |
|
GSE189328 |
| Tosti, Elena et al. (2022) Loss of MMR and TGFBR2 Increases the Susceptibility to Microbiota-Dependent Inflammation-Associated Colon Cancer.; Cell Mol Gastroenterol Hepatol, 14: 693-717 |
|
GSE183747 GSE183748 |
| Totary-Jain, Hana et al. (2013) Reprogramming of the microRNA transcriptome mediates resistance to rapamycin.; J Biol Chem, 288: 6034-44 |
|
GSE19885 |
| Totura, Allison L et al. (2015) Toll-Like Receptor 3 Signaling via TRIF Contributes to a Protective Innate Immune Response to Severe Acute Respiratory Syndrome Coronavirus Infection.; MBio, 6: e00638-15 |
|
GSE33266 |
| Touil, Yasmine et al. (2022) p65/RelA NF-κB fragments generated by RIPK3 activity regulate tumorigenicity, cell metabolism, and stemness characteristics.; J Cell Biochem, 123: 543-556 |
|
GSE135137 GSE135136 GSE98437 |
| Touvier, Thierry et al. (2024) Activation of XBP1s attenuates disease severity in models of proteotoxic Charcot-Marie-Tooth type 1B.; bioRxiv, [no vol.]: [no pages] |
|
GSE252089 |
| Tovar, Victoria et al. (2017) Tumour initiating cells and IGF/FGF signalling contribute to sorafenib resistance in hepatocellular carcinoma.; Gut, 66: 530-540 |
|
GSE73571 |
| Towers, Aaron J et al. [Unknown date]Epigenetic dysregulation of Oxtr in Tet1-deficient mice has implications for neuropsychiatric disorders.; JCI Insight, 3: [no pages] |
|
GSE99674 |
| Towfic, Fadi et al. (2014) Comparing the biological impact of glatiramer acetate with the biological impact of a generic.; PLoS One, 9: e83757 |
|
GSE40566 |
| Townley, Brittany A et al. (2023) A functional link between lariat debranching enzyme and the intron-binding complex is defective in non-photosensitive trichothiodystrophy.; Mol Cell, 83: 2258-2275.e11 |
|
GSE233383.1 GSE233383.2 |
| Toy, Weiyi et al. (2013) ESR1 ligand-binding domain mutations in hormone-resistant breast cancer.; Nat Genet, 45: 1439-45 |
|
GSE51448 |
| Trabzuni, Daniah et al. (2013) Widespread sex differences in gene expression and splicing in the adult human brain.; Nat Commun, 4: 2771 |
|
GSE60862 |
| Trakhtenberg, Ephraim F et al. (2014) Regulating Set-?'s Subcellular Localization Toggles Its Function between Inhibiting and Promoting Axon Growth and Regeneration.; J Neurosci, 34: 7361-74 |
|
GSE56951 |
| Tran, Nicholas M et al. (2014) Mechanistically distinct mouse models for CRX-associated retinopathy.; PLoS Genet, 10: e1004111 |
|
GSE51184 |
| Tran, Quynh T et al. (2009) Chemical genomics of cancer chemopreventive dithiolethiones.; Carcinogenesis, 30: 480-6 |
|
GSE8882 |
| Tran, Stephen S et al. [Unknown date]Widespread RNA editing dysregulation in brains from autistic individuals.; Nat Neurosci, 22: 25-36 |
|
GSE107896 |
| Tran, Thi Thom et al. (2019) Effect of landiolol on sex-related transcriptomic changes in the myocardium during sepsis.; Intensive Care Med Exp, 7: 50 |
|
GSE125042 |
| Tranchevent, Léon-Charles et al. (2023) Systems level analysis of sex-dependent gene expression changes in Parkinson's disease.; NPJ Parkinsons Dis, 9: 8 |
|
GSE168496 |
| Trandem, Kathryn et al. (2011) Highly activated cytotoxic CD8 T cells express protective IL-10 at the peak of coronavirus-induced encephalitis.; J Immunol, 186: 3642-52 |
|
GSE25846 |
| Trapnell, Cole et al. (2013) Differential analysis of gene regulation at transcript resolution with RNA-seq.; Nat Biotechnol, 31: 46-53 |
|
GSE37703 |
| Trapnell, Cole et al. (2014) The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells.; Nat Biotechnol, 32: 381-6 |
|
GSE52529 |
| Traunmüller, Lisa et al. (2016) Control of neuronal synapse specification by a highly dedicated alternative splicing program.; Science, 352: 982-6 |
|
GSE79902 |
| Traunmüller, Lisa et al. (2023) A cell-type-specific alternative splicing regulator shapes synapse properties in a trans-synaptic manner.; Cell Rep, 42: 112173 |
|
GSE209870 |
| Trautwein, Christoph et al. (2021) Tissue metabolites in diffuse glioma and their modulations by IDH1 mutation, histology and treatment.; JCI Insight, [no vol.]: [no pages] |
|
GSE190504 |
| Travelli, Cristina et al. (2023) Extracellular nicotinamide phosphoribosyltransferase (eNAMPT) neutralization counteracts T cell immune evasion in breast cancer.; J Immunother Cancer, 11: [no pages] |
|
GSE223539 |
| Treff, Nathan R et al. (2006) Differentiation of embryonic stem cells conditionally expressing neurogenin 3.; Stem Cells, 24: 2529-37 |
|
GSE3653 |
| Treiber, Thomas et al. (2010) Early B cell factor 1 regulates B cell gene networks by activation, repression, and transcription- independent poising of chromatin.; Immunity, 32: 714-25 |
|
GSE21454 |
| Treister, N S et al. (2005) Sex-related differences in gene expression in salivary glands of BALB/c mice.; J Dent Res, 84: 160-5 |
|
GSE1503 |
| Treviño, Lisa R et al. (2009) Germline genomic variants associated with childhood acute lymphoblastic leukemia.; Nat Genet, 41: 1001-5 |
|
GSE17195 |
| Trigila, Anabella P et al. (2023) Accelerated Evolution Analysis Uncovers PKNOX2 as a Key Transcription Factor in the Mammalian Cochlea.; Mol Biol Evol, 40: [no pages] |
|
GSE171921 |
| Trilling, Mirko et al. (2013) Deciphering the modulation of gene expression by type I and II interferons combining 4sU-tagging, translational arrest and in silico promoter analysis.; Nucleic Acids Res, 41: 8107-25 |
|
GSE30457 |
| Trimarchi, Jeffrey M et al. (2008) Individual retinal progenitor cells display extensive heterogeneity of gene expression.; PLoS One, 3: e1588 |
|
GSE9811 |
| Trimarchi, Thomas et al. (2014) Genome-wide mapping and characterization of Notch-regulated long noncoding RNAs in acute leukemia.; Cell, 158: 593-606 |
|
GSE57982 |
| Trimarco, Amelia et al. (2014) Prostaglandin D2 synthase/GPR44: a signaling axis in PNS myelination.; Nat Neurosci, 17: 1682-92 |
|
GSE61784 |
| Trinklein, Nathan D et al. (2004) The role of heat shock transcription factor 1 in the genome-wide regulation of the mammalian heat shock response.; Mol Biol Cell, 15: 1254-61 |
|
GSE3074 |
| Triolo, Taylor M et al. (2022) Stem-Cell-Derived β-Like Cells with a Functional PTPN2 Knockout Display Increased Immunogenicity.; Cells, 11: [no pages] |
|
GSE211636 |
| Tripathi, Aarti et al. (2021) Lack of Interferon (IFN) Regulatory Factor 8 Associated with Restricted IFN-γ Response Augmented Japanese Encephalitis Virus Replication in the Mouse Brain.; J Virol, 95: e0040621 |
|
GSE154002 |
| Tripathi, Abhai K et al. (2009) Plasmodium falciparum-infected erythrocytes induce NF-kappaB regulated inflammatory pathways in human cerebral endothelium.; Blood, 114: 4243-52 |
|
GSE9861 |
| Tripathi, Ajai et al. (2019) Oligodendrocyte Intrinsic miR-27a Controls Myelination and Remyelination.; Cell Rep, 29: 904-919.e9 |
|
GSE135308 |
| Tripathi, Anusri et al. (2008) Gene expression abnormalities in histologically normal breast epithelium of breast cancer patients.; Int J Cancer, 122: 1557-66 |
|
GSE9574 |
| Tripathi, Subhash K et al. (2017) Genome-wide Analysis of STAT3-Mediated Transcription during Early Human Th17 Cell Differentiation.; Cell Rep, 19: 1888-1901 |
|
GSE67185 |
| Tripathy, Sudeshna et al. (2024) Relaxin Modulates the Genomic Actions and Biological Effects of Estrogen in the Myometrium.; bioRxiv, [no vol.]: [no pages] |
|
GSE275894 |
| Trisno, Stephen L et al. (2018) Esophageal Organoids from Human Pluripotent Stem Cells Delineate Sox2 Functions during Esophageal Specification.; Cell Stem Cell, 23: 501-515.e7 |
|
GSE112886 |
| Triulzi, Tiziana et al. (2015) Whole-transcriptome analysis links trastuzumab sensitivity of breast tumors to both HER2 dependence and immune cell infiltration.; Oncotarget, 6: 28173-82 |
|
GSE55348 |
| Trivedi, Priyanka et al. (2017) Targeting Phospholipase D4 Attenuates Kidney Fibrosis.; J Am Soc Nephrol, 28: 3579-3589 |
|
GSE87212 |
| Trivedi, Vrunda et al. (2024) mRNA-based precision targeting of neoantigens and tumor-associated antigens in malignant brain tumors.; Genome Med, 16: 17 |
|
GSE251798 GSE251799 |
| Trizzino, Marco et al. [Unknown date]The Tumor Suppressor ARID1A Controls Global Transcription via Pausing of RNA Polymerase II.; Cell Rep, 23: 3933-3945 |
|
GSE104545 |
| Trollet, Capucine et al. (2010) Molecular and phenotypic characterization of a mouse model of oculopharyngeal muscular dystrophy reveals severe muscular atrophy restricted to fast glycolytic fibres.; Hum Mol Genet, 19: 2191-207 |
|
GSE26604 |
| Tropea, Daniela et al. (2006) Gene expression changes and molecular pathways mediating activity-dependent plasticity in visual cortex.; Nat Neurosci, 9: 660-8 |
|
GSE4537 |
| Tröscher, Anna R et al. (2019) Microglial nodules provide the environment for pathogenic T cells in human encephalitis.; Acta Neuropathol, 137: 619-635 |
|
GSE121010 |
| Tröscher, Anna R et al. (2023) Temporal lobe epilepsy with GAD antibodies: neurons killed by T cells not by complement membrane attack complex.; Brain, 146: 1436-1452 |
|
GSE209793 |
| Töröcsik, Dániel et al. (2010) Activation of liver X receptor sensitizes human dendritic cells to inflammatory stimuli.; J Immunol, 184: 5456-65 |
|
GSE8658 |