List of all 20,067 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Stessman, Holly A F et al. (2013) Profiling bortezomib resistance identifies secondary therapies in a mouse myeloma model.; Mol Cancer Ther, 12: 1140-50 |
|
GSE41928 |
| Stevens, Susan L et al. (2011) Multiple preconditioning paradigms converge on interferon regulatory factor-dependent signaling to promote tolerance to ischemic brain injury.; J Neurosci, 31: 8456-63 |
|
GSE32529 |
| Stevens, Tina et al. (2008) Increased transcription of immune and metabolic pathways in naive and allergic mice exposed to diesel exhaust.; Toxicol Sci, 102: 359-70 |
|
GSE9383 |
| Stevens, Tina et al. (2010) Differential Transcriptional Changes in Mice Exposed to Chemically Distinct Diesel Samples.; Biomed Inform Insights, 3: 29-52 |
|
GSE22357 |
| Stevenson, Christopher S et al. (2007) Comprehensive gene expression profiling of rat lung reveals distinct acute and chronic responses to cigarette smoke inhalation.; Am J Physiol Lung Cell Mol Physiol, 293: L1183-93 |
|
GSE7079 |
| Steward-Tharp, Scott M et al. (2014) A mouse model of HIES reveals pro- and anti-inflammatory functions of STAT3.; Blood, 123: 2978-87 |
|
GSE55607 |
| Stewart, Andrew F et al. (2023) Histone H3 dopaminylation in nucleus accumbens, but not medial prefrontal cortex, contributes to cocaine-seeking following prolonged abstinence.; Mol Cell Neurosci, 125: 103824 |
|
GSE221177 |
| Stewart, Delisha A et al. (2012) Basal-like breast cancer cells induce phenotypic and genomic changes in macrophages.; Mol Cancer Res, 10: 727-38 |
|
GSE52292 |
| Stewart, Grant D et al. (2015) Sunitinib Treatment Exacerbates Intratumoral Heterogeneity in Metastatic Renal Cancer.; Clin Cancer Res, 21: 4212-23 |
|
GSE65615 |
| Stewart, L et al. (2011) Hypothalamic transcriptome plasticity in two rodent species reveals divergent differential gene expression but conserved pathways.; J Neuroendocrinol, 23: 177-85 |
|
GSE25574 |
| Stewart, Taryn P et al. (2010) Genetic and genomic analysis of hyperlipidemia, obesity and diabetes using (C57BL/6J × TALLYHO/JngJ) F2 mice.; BMC Genomics, 11: 713 |
|
GSE24637 |
| Stewart, Walter F et al. (2018) Heading Frequency Is More Strongly Related to Cognitive Performance Than Unintentional Head Impacts in Amateur Soccer Players.; Front Neurol, 9: 240 |
|
GSE165758 |
| Stickeler, Elmar et al. (2011) Basal-like molecular subtype and HER4 up-regulation and response to neoadjuvant chemotherapy in breast cancer.; Oncol Rep, 26: 1037-45 |
|
GSE21974 |
| Stifel, Ulrich et al. (2022) Glucocorticoids coordinate macrophage metabolism through the regulation of the tricarboxylic acid cycle.; Mol Metab, 57: 101424 |
|
GSE167382 |
| Stifel, Ulrich et al. (2023) Unique Gene Expression Signature in Periadrenal Adipose Tissue Identifies a High Blood Pressure Group in Patients With Cushing Syndrome.; Hypertension, 80: 2333-2344 |
|
GSE218965 |
| Stiles, Jessica M et al. (2013) Morphological restriction of human coronary artery endothelial cells substantially impacts global gene expression patterns.; FEBS J, 280: 4474-94 |
|
GSE44168 |
| Stilling, Roman M et al. (2014) De-regulation of gene expression and alternative splicing affects distinct cellular pathways in the aging hippocampus.; Front Cell Neurosci, 8: 373 |
|
GSE61915 |
| Stilling, Roman M et al. (2014) K-Lysine acetyltransferase 2a regulates a hippocampal gene expression network linked to memory formation.; EMBO J, 33: 1912-27 |
|
GSE53428 GSE53380 |
| Stilling, Roman M et al. (2015) Microbes & neurodevelopment--Absence of microbiota during early life increases activity-related transcriptional pathways in the amygdala.; Brain Behav Immun, 50: 209-220 |
|
GSE66828 |
| Stilling, Roman M et al. (2018) Social interaction-induced activation of RNA splicing in the amygdala of microbiome-deficient mice.; Elife, 7: [no pages] |
|
GSE114702 |
| Stilp, Anne-Charlotte et al. (2022) The chromatin remodeling protein ATRX positively regulates IRF3-dependent type I interferon production and interferon-induced gene expression.; PLoS Pathog, 18: e1010748 |
|
GSE194396 |
| Stinson, Susanna et al. (2011) TRPS1 targeting by miR-221/222 promotes the epithelial-to-mesenchymal transition in breast cancer.; Sci Signal, 4: ra41 |
|
GSE10843 |
| Stirewalt, D L et al. (2009) Decreased IRF8 expression found in aging hematopoietic progenitor/stem cells.; Leukemia, 23: 391-3 |
|
GSE13496 |
| Stirewalt, Derek L et al. (2008) Identification of genes with abnormal expression changes in acute myeloid leukemia.; Genes Chromosomes Cancer, 47: 8-20 |
|
GSE9476 GSE1159 |
| Stitzlein, Lea M et al. (2023) Comparison of pharmacological inhibitors of lysine-specific demethylase 1 in glioblastoma stem cells reveals inhibitor-specific efficacy profiles.; Front Neurol, 14: 1112207 |
|
GSE224082 |
| Stock, Ariel D et al. (2019) Tertiary lymphoid structures in the choroid plexus in neuropsychiatric lupus.; JCI Insight, 4: [no pages] |
|
GSE99030 |
| Stockinger, Silvia et al. (2014) TRIF signaling drives homeostatic intestinal epithelial antimicrobial peptide expression.; J Immunol, 193: 4223-34 |
|
GSE51269 |
| Stockis, Julie et al. (2009) Comparison of stable human Treg and Th clones by transcriptional profiling.; Eur J Immunol, 39: 869-82 |
|
GSE14330 |
| Stocksdale, Jennifer T et al. (2025) Intersecting impact of CAG repeat and huntingtin knockout in stem cell-derived cortical neurons.; Neurobiol Dis, 210: 106914 |
|
GSE284798 |
| Stoddart, Angela et al. (2020) Cytotoxic Therapy-Induced Effects on Both Hematopoietic and Marrow Stromal Cells Promotes Therapy-Related Myeloid Neoplasms.; Blood Cancer Discov, 1: 32-47 |
|
GSE135866.2 GSE135866.1 |
| Stoddart, Angela et al. (2022) EGR1 Haploinsufficiency Confers a Fitness Advantage to Hematopoietic Stem Cells Following Chemotherapy.; Exp Hematol, 115: 54-67 |
|
GSE184931 |
| Stodden, G R et al. (2015) Loss of Cdh1 and Trp53 in the uterus induces chronic inflammation with modification of tumor microenvironment.; Oncogene, 34: 2471-82 |
|
GSE48131 |
| Stoeck, Alexander et al. (2014) Discovery of biomarkers predictive of GSI response in triple-negative breast cancer and adenoid cystic carcinoma.; Cancer Discov, 4: 1154-67 |
|
GSE59810 |
| Stojadinovic, Olivera et al. (2007) Novel genomic effects of glucocorticoids in epidermal keratinocytes: inhibition of apoptosis, interferon-gamma pathway, and wound healing along with promotion of terminal differentiation.; J Biol Chem, 282: 4021-34 |
|
GSE26487 |
| Stojakovic, Andrea et al. (2021) Partial inhibition of mitochondrial complex I ameliorates Alzheimer's disease pathology and cognition in APP/PS1 female mice.; Commun Biol, 4: 61 |
|
GSE149248 |
| Stojanov, Silvia et al. (2011) Periodic fever, aphthous stomatitis, pharyngitis, and adenitis (PFAPA) is a disorder of innate immunity and Th1 activation responsive to IL-1 blockade.; Proc Natl Acad Sci U S A, 108: 7148-53 |
|
GSE17732 |
| Stokes, Michael E et al. (2023) Subtype-selective prenylated isoflavonoids disrupt regulatory drivers of MYCN-amplified cancers.; Cell Chem Biol, [no vol.]: [no pages] |
|
GSE245006 |
| Stoklund Dittlau, Katarina et al. (2023) FUS-ALS hiPSC-derived astrocytes impair human motor units through both gain-of-toxicity and loss-of-support mechanisms.; Mol Neurodegener, 18: 5 |
|
GSE196219 |
| Stoll, Georg et al. (2013) Deletion of TOP3?, a component of FMRP-containing mRNPs, contributes to neurodevelopmental disorders.; Nat Neurosci, 16: 1228-37 |
|
GSE48072 |
| Stolley, J Michael et al. (2023) Depleting CD103+ resident memory T cells in vivo reveals immunostimulatory functions in oral mucosa.; J Exp Med, 220: [no pages] |
|
GSE229634 |
| Stolovitzky, G A et al. (2005) Statistical analysis of MPSS measurements: application to the study of LPS-activated macrophage gene expression.; Proc Natl Acad Sci U S A, 102: 1402-7 |
|
GSE5504 |
| Stolp, Jessica et al. (2013) Intrinsic molecular factors cause aberrant expansion of the splenic marginal zone B cell population in nonobese diabetic mice.; J Immunol, 191: 97-109 |
|
GSE43396 |
| Stolzenburg, Lindsay R et al. (2023) Functional characterization of a single nucleotide polymorphism associated with Alzheimer's disease in a hiPSC-based neuron model.; PLoS One, 18: e0291029 |
|
GSE239367 |
| Stone, Oliver A et al. (2018) Loss of pyruvate kinase M2 limits growth and triggers innate immune signaling in endothelial cells.; Nat Commun, 9: 4077 |
|
GSE84877 |
| Stone, Rivka C et al. (2017) A bioengineered living cell construct activates an acute wound healing response in venous leg ulcers.; Sci Transl Med, 9: [no pages] |
|
GSE84571 |
| Storey, John D et al. (2007) Gene-expression variation within and among human populations.; Am J Hum Genet, 80: 502-9 |
|
GSE7236 |
| Storm, Petter et al. (2013) A unifying mechanism for cancer cell death through ion channel activation by HAMLET.; PLoS One, 8: e58578 |
|
GSE23772 |
| Storti, P et al. (2013) Hypoxia-inducible factor (HIF)-1? suppression in myeloma cells blocks tumoral growth in vivo inhibiting angiogenesis and bone destruction.; Leukemia, 27: 1697-706 |
|
GSE40326 |
| Stoss, O et al. (2008) Transcriptional profiling of transurethral resection samples provides insight into molecular mechanisms of hormone refractory prostate cancer.; Prostate Cancer Prostatic Dis, 11: 166-72 |
|
GSE5377 |
| Stossi, Fabio et al. (2004) Transcriptional profiling of estrogen-regulated gene expression via estrogen receptor (ER) alpha or ERbeta in human osteosarcoma cells: distinct and common target genes for these receptors.; Endocrinology, 145: 3473-86 |
|
GSE1153 |
| Stott, Ryan T et al. (2021) Profiling DNA break sites and transcriptional changes in response to contextual fear learning.; PLoS One, 16: e0249691 |
|
GSE155095 |
| Stouffer, M A et al. (2022) Doublecortin mutation leads to persistent defects in the Golgi apparatus and mitochondria in adult hippocampal pyramidal cells.; Neurobiol Dis, 168: 105702 |
|
GSE185031 |
| Stow, Emily C et al. (2021) Organ-, sex- and age-dependent patterns of endogenous L1 mRNA expression at a single locus resolution.; Nucleic Acids Res, 49: 5813-5831 |
|
GSE158831.2 |
| Stoyanova, Elitsa et al. (2021) 5-Hydroxymethylcytosine-mediated active demethylation is required for mammalian neuronal differentiation and function.; Elife, 10: [no pages] |
|
GSE166423 |
| Stoyas, Colleen A et al. (2020) Nicotinamide Pathway-Dependent Sirt1 Activation Restores Calcium Homeostasis to Achieve Neuroprotection in Spinocerebellar Ataxia Type 7.; Neuron, 105: 630-644.e9 |
|
GSE139090 |
| Straessler, Krystal M et al. (2013) Modeling clear cell sarcomagenesis in the mouse: cell of origin differentiation state impacts tumor characteristics.; Cancer Cell, 23: 215-27 |
|
GSE41293 |
| Stranger, Barbara E et al. (2007) Relative impact of nucleotide and copy number variation on gene expression phenotypes.; Science, 315: 848-53 |
|
GSE6536 |
| Strasser, Arielle S et al. (2024) Limb reduction in an Esco2 cohesinopathy mouse model is mediated by p53-dependent apoptosis and vascular disruption.; Nat Commun, 15: 7154 |
|
GSE230347 |
| Strasser, Geraldine A et al. (2010) Microarray analysis of retinal endothelial tip cells identifies CXCR4 as a mediator of tip cell morphology and branching.; Blood, 115: 5102-10 |
|
GSE19284 |
| Stratford, Jeran K et al. (2010) A six-gene signature predicts survival of patients with localized pancreatic ductal adenocarcinoma.; PLoS Med, 7: e1000307 |
|
GSE21501 |
| Stratoulias, Vassilis et al. (2023) ARG1-expressing microglia show a distinct molecular signature and modulate postnatal development and function of the mouse brain.; Nat Neurosci, 26: 1008-1020 |
|
GSE216893 |
| Stratton, Jo Anne et al. (2018) Macrophages Regulate Schwann Cell Maturation after Nerve Injury.; Cell Rep, 24: 2561-2572.e6 |
|
GSE106927 |
| Stratton, Matthew S et al. (2019) Dynamic Chromatin Targeting of BRD4 Stimulates Cardiac Fibroblast Activation.; Circ Res, 125: 662-677 |
|
GSE129265 |
| Straud, Sarah et al. (2010) Inhibition of iron uptake is responsible for differential sensitivity to V-ATPase inhibitors in several cancer cell lines.; PLoS One, 5: e11629 |
|
GSE16870 |
| Streets, Aaron M et al. (2014) Microfluidic single-cell whole-transcriptome sequencing.; Proc Natl Acad Sci U S A, 111: 7048-53 |
|
GSE47835 |
| Stretch, Cynthia et al. (2013) Effects of sample size on differential gene expression, rank order and prediction accuracy of a gene signature.; PLoS One, 8: e65380 |
|
GSE41726 |
| Stribl, Carola et al. (2014) Mitochondrial dysfunction and decrease in body weight of a transgenic knock-in mouse model for TDP-43.; J Biol Chem, 289: 10769-84 |
|
GSE39585 |
| Strietz, Juliane et al. (2016) ERN1 and ALPK1 inhibit differentiation of bi-potential tumor-initiating cells in human breast cancer.; Oncotarget, 7: 83278-83293 |
|
GSE79630 |
| Stromecki, Margaret et al. (2018) Characterization of a novel OTX2-driven stem cell program in Group 3 and Group 4 medulloblastoma.; Mol Oncol, 12: 495-513 |
|
GSE98279 |
| Stromnes, Ingunn M et al. (2022) Insufficiency of compound immune checkpoint blockade to overcome engineered T cell exhaustion in pancreatic cancer.; J Immunother Cancer, 10: [no pages] |
|
GSE196435 |
| Strong, Judith A et al. (2012) Microarray analysis of rat sensory ganglia after local inflammation implicates novel cytokines in pain.; PLoS One, 7: e40779 |
|
GSE38859 |
| Stroud, Hume et al. (2017) Early-Life Gene Expression in Neurons Modulates Lasting Epigenetic States.; Cell, 171: 1151-1164.e16 |
|
GSE104325 GSE103185 |
| Stroud, Hume et al. (2020) An Activity-Mediated Transition in Transcription in Early Postnatal Neurons.; Neuron, [no vol.]: [no pages] |
|
GSE150535 |
| Strulovici-Barel, Yael et al. (2010) Threshold of biologic responses of the small airway epithelium to low levels of tobacco smoke.; Am J Respir Crit Care Med, 182: 1524-32 |
|
GSE19667 |
| Strunnikova, N V et al. (2010) Transcriptome analysis and molecular signature of human retinal pigment epithelium.; Hum Mol Genet, 19: 2468-86 |
|
GSE18811 |
| Strunnikova, Nataly et al. (2005) Differences in gene expression profiles in dermal fibroblasts from control and patients with age-related macular degeneration elicited by oxidative injury.; Free Radic Biol Med, 39: 781-96 |
|
GSE1719 |
| Struntz, Nicholas B et al. (2019) Stabilization of the Max Homodimer with a Small Molecule Attenuates Myc-Driven Transcription.; Cell Chem Biol, 26: 711-723.e14 |
|
GSE107222 |
| Stryjewska, Agata et al. (2017) Zeb2 Regulates Cell Fate at the Exit from Epiblast State in Mouse Embryonic Stem Cells.; Stem Cells, 35: 611-625 |
|
GSE75616 |
| Strøm, Claes C et al. (2004) Identification of a core set of genes that signifies pathways underlying cardiac hypertrophy.; Comp Funct Genomics, 5: 459-70 |
|
GSE738 |
| Stuart, Robert O et al. (2004) In silico dissection of cell-type-associated patterns of gene expression in prostate cancer.; Proc Natl Acad Sci U S A, 101: 615-20 |
|
GSE1431 |
| Stumpo, Deborah J et al. (2009) Targeted disruption of Zfp36l2, encoding a CCCH tandem zinc finger RNA-binding protein, results in defective hematopoiesis.; Blood, [no vol.]: [no pages] |
|
GSE15146 |
| Stupack, Jessica et al. (2020) Soluble SORLA Enhances Neurite Outgrowth and Regeneration through Activation of the EGF Receptor/ERK Signaling Axis.; J Neurosci, 40: 5908-5921 |
|
GSE150257 |
| Sturm, Dominik et al. (2012) Hotspot mutations in H3F3A and IDH1 define distinct epigenetic and biological subgroups of glioblastoma.; Cancer Cell, 22: 425-37 |
|
GSE36245 |
| Sturm, Dominik et al. (2016) New Brain Tumor Entities Emerge from Molecular Classification of CNS-PNETs.; Cell, 164: 1060-1072 |
|
GSE73038 |
| Sturman, Oliver et al. (2021) Chronic adolescent stress increases exploratory behavior but does not appear to change the acute stress response in adult male C57BL/6 mice.; Neurobiol Stress, 15: 100388 |
|
GSE172451 |
| Sturmlechner, Ines et al. (2022) Senescent cells limit p53 activity via multiple mechanisms to remain viable.; Nat Commun, 13: 3722 |
|
GSE169329 |
| Sturtzel, Caterina et al. (2014) The transcription factor MEF2C negatively controls angiogenic sprouting of endothelial cells depending on oxygen.; PLoS One, 9: e101521 |
|
GSE46279 |
| Störchel, Peter H et al. (2015) A large-scale functional screen identifies Nova1 and Ncoa3 as regulators of neuronal miRNA function.; EMBO J, 34: 2237-54 |
|
GSE69131 |
| Su, Andrew I et al. (2002) Large-scale analysis of the human and mouse transcriptomes.; Proc Natl Acad Sci U S A, 99: 4465-70 |
|
GSE96 GSE97 |
| Su, Andrew I et al. (2004) A gene atlas of the mouse and human protein-encoding transcriptomes.; Proc Natl Acad Sci U S A, 101: 6062-7 |
|
GSE1133.2 |
| Su, Dan et al. (2008) Gene expression profiling elucidates a specific role for RARgamma in the retinoic acid-induced differentiation of F9 teratocarcinoma stem cells.; Biochem Pharmacol, 75: 1129-60 |
|
GSE8431 |
| Su, Jing et al. (2020) Multi-Omics Analysis of Brain Metastasis Outcomes Following Craniotomy.; Front Oncol, 10: 615472 |
|
GSE164150 |
| Su, Li-Jen et al. (2007) Selection of DDX5 as a novel internal control for Q-RT-PCR from microarray data using a block bootstrap re-sampling scheme.; BMC Genomics, 8: 140 |
|
GSE7670 |
| Su, Rui et al. (2020) Targeting FTO Suppresses Cancer Stem Cell Maintenance and Immune Evasion.; Cancer Cell, 38: 79-96.e11 |
|
GSE136204 |
| Su, Tingting et al. (2024) Quercetin promotes the proportion and maturation of NK cells by binding to MYH9 and improves cognitive functions in aged mice.; Immun Ageing, 21: 29 |
|
GSE245357 |