List of all 16,687 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Vadodaria, Krishna C et al. (2019) Altered serotonergic circuitry in SSRI-resistant major depressive disorder patient-derived neurons.; Mol Psychiatry, 24: 808-818 |
|
GSE126512 |
| Vadodaria, Krishna C et al. (2021) Altered Neuronal Support and Inflammatory Response in Bipolar Disorder Patient-Derived Astrocytes.; Stem Cell Reports, 16: 825-835 |
|
GSE157509 |
| Vadodaria, Krishna C et al. [Unknown date]Serotonin-induced hyperactivity in SSRI-resistant major depressive disorder patient-derived neurons.; Mol Psychiatry, 24: 795-807 |
|
GSE125664 |
| Vaganova, Anastasia N et al. (2024) Knocking Out TAAR5: A Pathway to Enhanced Neurogenesis and Dopamine Signaling in the Striatum.; Cells, 13: [no pages] |
|
GSE276664 |
| Vagena, Eirini et al. (2022) ASB4 modulates central melanocortinergic neurons and calcitonin signaling to control satiety and glucose homeostasis.; Sci Signal, 15: eabj8204 |
|
GSE139148 |
| Vagena, Eirini et al. [Unknown date]A high-fat diet promotes depression-like behavior in mice by suppressing hypothalamic PKA signaling.; Transl Psychiatry, 9: 141 |
|
GSE127056 |
| Vagnozzi, Alicia N et al. (2020) Phrenic-specific transcriptional programs shape respiratory motor output.; Elife, 9: [no pages] |
|
GSE138085 |
| Vahedi, Golnaz et al. (2012) STATs shape the active enhancer landscape of T cell populations.; Cell, 151: 981-93 |
|
GSE40463 |
| Vahedi, Golnaz et al. (2015) Super-enhancers delineate disease-associated regulatory nodes in T cells.; Nature, 520: 558-62 |
|
GSE60482.2 GSE60482.1 |
| Vahey, Maryanne T et al. (2002) Impact of viral infection on the gene expression profiles of proliferating normal human peripheral blood mononuclear cells infected with HIV type 1 RF.; AIDS Res Hum Retroviruses, 18: 179-92 |
|
GSE511 |
| Vahey, Maryanne T et al. (2008) CD4+ T-cell decline after the interruption of antiretroviral therapy in ACTG A5170 is predicted by differential expression of genes in the ras signaling pathway.; AIDS Res Hum Retroviruses, 24: 1047-66 |
|
GSE10924 |
| Vahsen, Björn F et al. (2022) Human iPSC co-culture model to investigate the interaction between microglia and motor neurons.; Sci Rep, 12: 12606 |
|
GSE200037 |
| Vahsen, Björn F et al. (2023) C9orf72-ALS human iPSC microglia are pro-inflammatory and toxic to co-cultured motor neurons via MMP9.; Nat Commun, 14: 5898 |
|
GSE217625 |
| Vahsen, Björn Friedhelm et al. (2020) Inhibition of the autophagic protein ULK1 attenuates axonal degeneration in vitro and in vivo, enhances translation, and modulates splicing.; Cell Death Differ, 27: 2810-2827 |
|
GSE123687 |
| Vaid, Samir et al. [Unknown date]A novel population of Hopx-dependent basal radial glial cells in the developing mouse neocortex.; Development, 145: [no pages] |
|
GSE121008 |
| Vainchtein, Ilia D et al. (2018) Astrocyte-derived interleukin-33 promotes microglial synapse engulfment and neural circuit development.; Science, 359: 1269-1273 |
|
GSE109352 GSE109353 |
| Vainchtein, Ilia D et al. (2023) Characterizing microglial gene expression in a model of secondary progressive multiple sclerosis.; Glia, 71: 588-601 |
|
GSE194071 |
| Vainorius, Gintautas et al. (2023) Ascl1 and Ngn2 convert mouse embryonic stem cells to neurons via functionally distinct paths.; Nat Commun, 14: 5341 |
|
GSE208199 GSE206870 |
| Vaishnav, Radhika A et al. (2008) Cellular and molecular characterization of oxidative stress in olfactory epithelium of Harlequin mutant mouse.; J Neurosci Res, 86: 165-82 |
|
GSE6485 |
| Vaisitti, T et al. (2015) The enzymatic activities of CD38 enhance CLL growth and trafficking: implications for therapeutic targeting.; Leukemia, 29: 356-68 |
|
GSE56369 |
| Valassina, Nicholas et al. (2022) Scn1a gene reactivation after symptom onset rescues pathological phenotypes in a mouse model of Dravet syndrome.; Nat Commun, 13: 161 |
|
GSE171191 |
| Valcarcel-Jimenez, Lorea et al. (2018) Integrative analysis of transcriptomics and clinical data uncovers the tumor-suppressive activity of MITF in prostate cancer.; Cell Death Dis, 9: 1041 |
|
GSE114345 |
| Valcz, Gábor et al. (2014) Myofibroblast-derived SFRP1 as potential inhibitor of colorectal carcinoma field effect.; PLoS One, 9: e106143 |
|
GSE37364 |
| Valdes, Phoebe et al. (2023) Limitations of the human iPSC-derived neuron model for early-onset Alzheimer's disease.; Mol Brain, 16: 75 |
|
GSE231341 |
| Valdes, Phoebe et al. (2025) Integrative multiomics reveals common endotypes across PSEN1, PSEN2, and APP mutations in familial Alzheimer's disease.; Alzheimers Res Ther, 17: 5 |
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GSE206602 |
| Valdora, Francesca et al. (2013) Epigenetic Silencing of DKK3 in Medulloblastoma.; Int J Mol Sci, 14: 7492-505 |
|
GSE39182 |
| Valek, Lucie et al. (2021) Prodromal sensory neuropathy in Pink1-/-SNCAA53Tdouble mutant Parkinson mice.; Neuropathol Appl Neurobiol, 47: 1060-1079 |
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GSE146091 |
| Valentijn, Linda J et al. (2012) Functional MYCN signature predicts outcome of neuroblastoma irrespective of MYCN amplification.; Proc Natl Acad Sci U S A, 109: 19190-5 |
|
GSE39218 |
| Valentijn, Linda J et al. (2015) TERT rearrangements are frequent in neuroblastoma and identify aggressive tumors.; Nat Genet, 47: 1411-4 |
|
GSE73537 |
| Valentin-Vega, Yasmine A et al. (2016) Cancer-associated DDX3X mutations drive stress granule assembly and impair global translation.; Sci Rep, 6: 25996 |
|
GSE59093 |
| Valentino, Sarah A et al. (2021) Exposure to TiO2Nanostructured Aerosol Induces Specific Gene Expression Profile Modifications in the Lungs of Young and Elderly Rats.; Nanomaterials (Basel), 11: [no pages] |
|
GSE145479 |
| Valinciute, Gintvile et al. (2023) Class I HDAC inhibitor entinostat synergizes with PLK1 inhibitors in MYC-amplified medulloblastoma cells.; J Neurooncol, 163: 143-158 |
|
GSE220748 |
| Valisno, Jeff Arni C et al. (2021) BCL11B Regulates Arterial Stiffness and Related Target Organ Damage.; Circ Res, 128: 755-768 |
|
GSE163551 |
| Valiulahi, Parvin et al. (2021) Generation of caudal-type serotonin neurons and hindbrain-fate organoids from hPSCs.; Stem Cell Reports, [no vol.]: [no pages] |
|
GSE167278 |
| Vallacchi, Viviana et al. (2014) Transcriptional profiling of melanoma sentinel nodes identify patients with poor outcome and reveal an association of CD30(+) T lymphocytes with progression.; Cancer Res, 74: 130-40 |
|
GSE39945 |
| Vallanat, Beena et al. (2010) Analysis of the heat shock response in mouse liver reveals transcriptional dependence on the nuclear receptor peroxisome proliferator-activated receptor alpha (PPARalpha).; BMC Genomics, 11: 16 |
|
GSE14869 |
| Vallat, Laurent et al. (2013) Reverse-engineering the genetic circuitry of a cancer cell with predicted intervention in chronic lymphocytic leukemia.; Proc Natl Acad Sci U S A, 110: 459-64 |
|
GSE39411 |
| Vallecillo-García, Pedro et al. (2024) Mesenchymal Osr1+ cells regulate embryonic lymphatic vessel formation.; Development, 151: [no pages] |
|
GSE269397 |
| Vallejo-Gracia, Albert et al. (2020) FOXO1 promotes HIV latency by suppressing ER stress in T cells.; Nat Microbiol, 5: 1144-1157 |
|
GSE129522 |
| Vallianatos, Christina N et al. (2020) Mutually suppressive roles of KMT2A and KDM5C in behaviour, neuronal structure, and histone H3K4 methylation.; Commun Biol, 3: 278 |
|
GSE127722 |
| Valor, L M et al. (2010) Ultrastructural and transcriptional profiling of neuropathological misregulation of CREB function.; Cell Death Differ, 17: 1636-44 |
|
GSE21137 |
| Valor, Luis M et al. (2013) Genomic landscape of transcriptional and epigenetic dysregulation in early onset polyglutamine disease.; J Neurosci, 33: 10471-82 |
|
GSE44306 |
| van 't Veer, Laura J et al. (2002) Gene expression profiling predicts clinical outcome of breast cancer.; Nature, 415: 530-6 |
|
vantveer-breast |
| van Baarle, Lies et al. (2024) IL-1R signaling drives enteric glia-macrophage interactions in colorectal cancer.; Nat Commun, 15: 6079 |
|
GSE231802 GSE231709 |
| van Baarlen, Peter et al. (2009) Differential NF-kappaB pathways induction by Lactobacillus plantarum in the duodenum of healthy humans correlating with immune tolerance.; Proc Natl Acad Sci U S A, 106: 2371-6 |
|
GSE11355 |
| van Berlo, Jop H et al. (2011) Serine 105 phosphorylation of transcription factor GATA4 is necessary for stress-induced cardiac hypertrophy in vivo.; Proc Natl Acad Sci U S A, 108: 12331-6 |
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GSE30314 |
| van Berlo, Jop H et al. (2013) Parsing the roles of the transcription factors GATA-4 and GATA-6 in the adult cardiac hypertrophic response.; PLoS One, 8: e84591 |
|
GSE52317 |
| van Beveren, Nico J M et al. (2012) Marked reduction of AKT1 expression and deregulation of AKT1-associated pathways in peripheral blood mononuclear cells of schizophrenia patients.; PLoS One, 7: e32618 |
|
GSE27383 |
| van Bragt, Maaike P A et al. (2014) RUNX1, a transcription factor mutated in breast cancer, controls the fate of ER-positive mammary luminal cells.; Elife, 3: e03881 |
|
GSE47375 |
| van Breda, Simone G J et al. (2014) Can transcriptomics provide insight into the chemopreventive mechanisms of complex mixtures of phytochemicals in humans?; Antioxid Redox Signal, 20: 2107-13 |
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GSE41781 |
| van Breda, Simone G J et al. [Unknown date]Integrative omics data analyses of repeated dose toxicity of valproic acid in vitro reveal new mechanisms of steatosis induction.; Toxicology, 393: 160-170 |
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GSE84150 |
| van Bree, Elisabeth J et al. (2022) A hidden layer of structural variation in transposable elements reveals potential genetic modifiers in human disease-risk loci.; Genome Res, 32: 656-670 |
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GSE167409 |
| van Bree, Niek et al. (2024) Development of an orthotopic medulloblastoma zebrafish model for rapid drug testing.; Neuro Oncol, [no vol.]: [no pages] |
|
GSE271361 |
| Van Breedam, Elise et al. (2023) Lack of strong innate immune reactivity renders macrophages alone unable to control productive Varicella-Zoster Virus infection in an isogenic human iPSC-derived neuronal co-culture model.; Front Immunol, 14: 1177245 |
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GSE228390.2 GSE228390.1 |
| Van Bussel, I P G et al. (2017) The impact of protein quantity during energy restriction on genome-wide gene expression in adipose tissue of obese humans.; Int J Obes (Lond), 41: 1114-1120 |
|
GSE84046 |
| van de Garde, Martijn D B et al. (2014) Chronic exposure to glucocorticoids shapes gene expression and modulates innate and adaptive activation pathways in macrophages with distinct changes in leukocyte attraction.; J Immunol, 192: 1196-208 |
|
GSE49706 GSE49709 |
| van de Laar, Lianne et al. (2016) Yolk Sac Macrophages, Fetal Liver, and Adult Monocytes Can Colonize an Empty Niche and Develop into Functional Tissue-Resident Macrophages.; Immunity, 44: 755-68 |
|
GSE76999 |
| van de Leemput, Joyce et al. (2014) CORTECON: a temporal transcriptome analysis of in vitro human cerebral cortex development from human embryonic stem cells.; Neuron, 83: 51-68 |
|
GSE56796 |
| Van de Velde, Lee-Ann et al. (2021) Neuroblastoma Formation Requires Unconventional CD4 T Cells and Arginase-1-Dependent Myeloid Cells.; Cancer Res, 81: 5047-5059 |
|
GSE126024 |
| van Delft, Joost et al. (2012) RNA-Seq provides new insights in the transcriptome responses induced by the carcinogen benzo[a]pyrene.; Toxicol Sci, 130: 427-39 |
|
GSE36242 |
| van den Berg, Linda et al. (2015) Genetic dissection of the Mss4 locus mediating sex-biased cancer resistance in the rat peripheral nervous system.; Int J Cancer, 136: 2099-108 |
|
GSE53390 |
| van den Berge, Maarten et al. (2013) Airway gene expression in COPD is dynamic with inhaled corticosteroid treatment and reflects biological pathways associated with disease activity.; Thorax, [no vol.]: [no pages] |
|
GSE36221 |
| van den Berghe, Veronique et al. (2013) Directed migration of cortical interneurons depends on the cell-autonomous action of Sip1.; Neuron, 77: 70-82 |
|
GSE35616 |
| van den Biggelaar, Anita H J et al. (2011) Pneumococcal conjugate vaccination at birth in a high-risk setting: no evidence for neonatal T-cell tolerance.; Vaccine, 29: 5414-20 |
|
GSE25263 |
| van den Bosch, Aletta M R et al. (2024) Profiling of microglia nodules in multiple sclerosis reveals propensity for lesion formation.; Nat Commun, 15: 1667 |
|
GSE234700 |
| van den Bosch, Heleen M et al. (2007) Gene expression of transporters and phase I/II metabolic enzymes in murine small intestine during fasting.; BMC Genomics, 8: 267 |
|
GSE6864 |
| Van den Broeck, Anke et al. (2012) Molecular markers associated with outcome and metastasis in human pancreatic cancer.; J Exp Clin Cancer Res, 31: 68 |
|
GSE42952 |
| van den Hove, Daniel Louis Albert et al. (2011) Differential effects of prenatal stress in 5-Htt deficient mice: towards molecular mechanisms of gene × environment interactions.; PLoS One, 6: e22715 |
|
GSE26025 |
| Van Dender, Céline et al. (2024) A critical role for HNF4α in polymicrobial sepsis-associated metabolic reprogramming and death.; EMBO Mol Med, [no vol.]: [no pages] |
|
GSE246053 |
| van der Heul-Nieuwenhuijsen, Leonie et al. (2009) The FOXF2 pathway in the human prostate stroma.; Prostate, 69: 1538-47 |
|
GSE12444 |
| van der Kallen, Loek R et al. (2015) Genetic Deletion of the Transcriptional Repressor NFIL3 Enhances Axon Growth In Vitro but Not Axonal Repair In Vivo.; PLoS One, 10: e0127163 |
|
GSE66259 |
| van der Laan, Anja M et al. (2012) Galectin-2 expression is dependent on the rs7291467 polymorphism and acts as an inhibitor of arteriogenesis.; Eur Heart J, 33: 1076-84 |
|
GSE13290 |
| van der Lelij, Petra et al. (2014) SNW1 enables sister chromatid cohesion by mediating the splicing of sororin and APC2 pre-mRNAs.; EMBO J, 33: 2643-58 |
|
GSE61071 |
| van der Linden, Robert J et al. (2022) RNA-binding protein ELAVL4/HuD ameliorates Alzheimer's disease-related molecular changes in human iPSC-derived neurons.; Prog Neurobiol, 217: 102316 |
|
GSE202985 |
| van der Poel, Marlijn et al. [Unknown date]Transcriptional profiling of human microglia reveals grey-white matter heterogeneity and multiple sclerosis-associated changes.; Nat Commun, 10: 1139 |
|
GSE111972 |
| van der Putten, Céline et al. [Unknown date]TLR-Induced IL-12 and CCL2 Production by Myeloid Cells Is Dependent on Adenosine A3Receptor-Mediated Signaling.; J Immunol, 202: 2421-2430 |
|
GSE125747 |
| Van der Veen, Daan R et al. (2020) A Topological Cluster of Differentially Regulated Genes in Mice Lacking PER3.; Front Mol Neurosci, 13: 15 |
|
GSE143650 |
| van der Zee, Yentl Y et al. (2022) Sex-Specific Role for SLIT1 in Regulating Stress Susceptibility.; Biol Psychiatry, 91: 81-91 |
|
GSE158993 |
| van Diepen, Janna A et al. (2013) Caspase-1 deficiency in mice reduces intestinal triglyceride absorption and hepatic triglyceride secretion.; J Lipid Res, 54: 448-56 |
|
GSE32515 |
| van Doeselaar, Lotte et al. (2023) Sex-specific and opposed effects of FKBP51 in glutamatergic and GABAergic neurons: Implications for stress susceptibility and resilience.; Proc Natl Acad Sci U S A, 120: e2300722120 |
|
GSE232460 |
| Van Dyck, Frederik et al. (2007) Loss of the PlagL2 transcription factor affects lacteal uptake of chylomicrons.; Cell Metab, 6: 406-13 |
|
GSE9123 |
| van Erp, Katrin et al. (2006) Role of strain differences on host resistance and the transcriptional response of macrophages to infection with Yersinia enterocolitica.; Physiol Genomics, 25: 75-84 |
|
GSE2973 |
| van Essen, T Huibertus et al. (2016) Upregulation of HLA Expression in Primary Uveal Melanoma by Infiltrating Leukocytes.; PLoS One, 11: e0164292 |
|
GSE84976 |
| van Gemert, Frank et al. (2024) ADARp150 counteracts whole genome duplication.; Nucleic Acids Res, 52: 10370-10384 |
|
GSE262277 |
| Van Handel, Ben et al. (2012) Scl represses cardiomyogenesis in prospective hemogenic endothelium and endocardium.; Cell, 150: 590-605 |
|
GSE27445 |
| van Hasselt, J G Coen et al. (2020) Transcriptomic profiling of human cardiac cells predicts protein kinase inhibitor-associated cardiotoxicity.; Nat Commun, 11: 4809 |
|
GSE146095 GSE146096 |
| Van Heesbeen, Hendrikus J et al. (2023) Neuronal Dot1l Activity Acts as a Mitochondrial Gene-Repressor Associated with Human Brain Aging via H3K79 Hypermethylation.; Int J Mol Sci, 24: [no pages] |
|
GSE184901 GSE185257 |
| van Hooren, Luuk et al. (2023) CD103+regulatory T cells underlie resistance to radio-immunotherapy and impair CD8+T cell activation in glioblastoma.; Nat Cancer, 4: 665-681 |
|
GSE203260 |
| Van Hove, Hannah et al. (2019) A single-cell atlas of mouse brain macrophages reveals unique transcriptional identities shaped by ontogeny and tissue environment.; Nat Neurosci, 22: 1021-1035 |
|
GSE128781 |
| Van Keymeulen, Alexandra et al. (2015) Reactivation of multipotency by oncogenic PIK3CA induces breast tumour heterogeneity.; Nature, 525: 119-23 |
|
GSE69290 |
| Van Landeghem, Laurianne et al. (2009) Regulation of intestinal epithelial cells transcriptome by enteric glial cells: impact on intestinal epithelial barrier functions.; BMC Genomics, 10: 507 |
|
GSE17027 |
| Van Landeghem, Laurianne et al. (2012) Activation of two distinct Sox9-EGFP-expressing intestinal stem cell populations during crypt regeneration after irradiation.; Am J Physiol Gastrointest Liver Physiol, 302: G1111-32 |
|
GSE32227 |