List of all 21,870 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Soejima-Kusunoki, Aki et al. (2022) The Protective Effect of Edaravone on TDP-43 Plus Oxidative Stress-Induced Neurotoxicity in Neuronal Cells: Analysis of Its Neuroprotective Mechanisms Using RNA Sequencing.; Pharmaceuticals (Basel), 15: [no pages] |
|
GSE207578 |
| Soelter, Tabea M et al. (2025) Evaluation of altered cell-cell communication between glia and neurons in the hippocampus of 3xTg-AD mice at two time points.; J Cell Commun Signal, 19: e70006 |
|
GSE261596 |
| Sofueva, Sevil et al. (2013) Cohesin-mediated interactions organize chromosomal domain architecture.; EMBO J, 32: 3119-29 |
|
GSE48965 |
| Sohn, Bo Hwa et al. (2016) Inactivation of Hippo Pathway Is Significantly Associated with Poor Prognosis in Hepatocellular Carcinoma.; Clin Cancer Res, 22: 1256-64 |
|
GSE32510 |
| Sohn, Jihee et al. (2022) A new murine model of Barth syndrome neutropenia links TAFAZZIN deficiency to increased ER stress-induced apoptosis.; Blood Adv, 6: 2557-2577 |
|
GSE151007 GSE151006 |
| Sohn, Paul et al. (2023) Stromal Interaction Molecule 1 Maintains β-Cell Identity and Function in Female Mice Through Preservation of G-Protein-Coupled Estrogen Receptor 1 Signaling.; Diabetes, 72: 1433-1445 |
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GSE208135 |
| Sohn, Philip et al. (2010) Molecular profiling of the developing mouse axial skeleton: a role for Tgfbr2 in the development of the intervertebral disc.; BMC Dev Biol, 10: 29 |
|
GSE18648 GSE18647 |
| Sohni, Abhishek et al. (2012) TGF?1-induced Baf60c regulates both smooth muscle cell commitment and quiescence.; PLoS One, 7: e47629 |
|
GSE32990 |
| Soini, Tea et al. (2018) Transcription factor GATA4 associates with mesenchymal-like gene expression in human hepatoblastoma cells.; Tumour Biol, 40: 1010428318785498 |
|
GSE110788 |
| Sojka, Dorothy K et al. (2014) Tissue-resident natural killer (NK) cells are cell lineages distinct from thymic and conventional splenic NK cells.; Elife, 3: e01659 |
|
GSE52043 |
| Sokolik, Cameron et al. (2015) Transcription factor competition allows embryonic stem cells to distinguish authentic signals from noise.; Cell Syst, 1: 117-129 |
|
GSE71889 |
| Sokolov, David et al. (2021) Nuclear NAD+-biosynthetic enzyme NMNAT1 facilitates development and early survival of retinal neurons.; Elife, 10: [no pages] |
|
GSE178312 |
| Sokpor, Godwin et al. (2021) Loss of BAF Complex in Developing Cortex Perturbs Radial Neuronal Migration in a WNT Signaling-Dependent Manner.; Front Mol Neurosci, 14: 687581 |
|
GSE175362 |
| Solaimani Kartalaei, Parham et al. (2015) Whole-transcriptome analysis of endothelial to hematopoietic stem cell transition reveals a requirement for Gpr56 in HSC generation.; J Exp Med, 212: 93-106 |
|
GSE63316 |
| Solanas, Guiomar et al. (2017) Aged Stem Cells Reprogram Their Daily Rhythmic Functions to Adapt to Stress.; Cell, 170: 678-692.e20 |
|
GSE84510 GSE84508 GSE84511 |
| Solano Fonseca, Rene et al. (2021) Glycolytic preconditioning in astrocytes mitigates trauma-induced neurodegeneration.; Elife, 10: [no pages] |
|
GSE173431 |
| Soldan, Samantha S et al. (2021) Epigenetic Plasticity Enables CNS-Trafficking of EBV-infected B Lymphocytes.; PLoS Pathog, 17: e1009618 |
|
GSE172475 |
| Soldati, Chiara et al. (2012) Repressor element 1 silencing transcription factor couples loss of pluripotency with neural induction and neural differentiation.; Stem Cells, 30: 425-34 |
|
GSE34244 |
| Soldati, Chiara et al. (2013) Dysregulation of REST-regulated coding and non-coding RNAs in a cellular model of Huntington's disease.; J Neurochem, 124: 418-30 |
|
GSE42107 |
| Soldevilla, Beatriz et al. (2023) MicroRNA signature and integrative omics analyses define prognostic clusters and key pathways driving prognosis in patients with neuroendocrine neoplasms.; Mol Oncol, 17: 582-597 |
|
GSE211485 |
| Soldner, Frank et al. (2009) Parkinson's disease patient-derived induced pluripotent stem cells free of viral reprogramming factors.; Cell, 136: 964-77 |
|
GSE14711 |
| Soldner, Frank et al. (2011) Generation of isogenic pluripotent stem cells differing exclusively at two early onset Parkinson point mutations.; Cell, 146: 318-31 |
|
GSE29773 |
| Soleimani, Vahab D et al. (2012) Transcriptional dominance of Pax7 in adult myogenesis is due to high-affinity recognition of homeodomain motifs.; Dev Cell, 22: 1208-20 |
|
GSE32266 |
| Solga, Anne C et al. (2015) RNA-sequencing reveals oligodendrocyte and neuronal transcripts in microglia relevant to central nervous system disease.; Glia, 63: 531-48 |
|
GSE53789 |
| Solheim, Marie H et al. (2025) Hypothalamic PNOC/NPY neurons constitute mediators of leptin-controlled energy homeostasis.; Cell, 188: 3550-3566.e22 |
|
GSE292416 |
| Soliai, Marcus M et al. (2021) Multi-omics colocalization with genome-wide association studies reveals a context-specific genetic mechanism at a childhood onset asthma risk locus.; Genome Med, 13: 157 |
|
GSE172367 |
| Solier, Stéphanie et al. (2023) A druggable copper-signalling pathway that drives inflammation.; Nature, 617: 386-394 |
|
GSE160863 |
| Soliera, Angela Rachele et al. (2008) Transcriptional repression of c-Myb and GATA-2 is involved in the biologic effects of C/EBPalpha in p210BCR/ABL-expressing cells.; Blood, 112: 1942-50 |
|
GSE11766 |
| Soliman, Shimaa H A et al. (2023) Enhancing HIV-1 latency reversal through regulating the elongating RNA Pol II pause-release by a small-molecule disruptor of PAF1C.; Sci Adv, 9: eadf2468 |
|
GSE211651.2 GSE211651.1 |
| Solinski, Hans Jürgen et al. (2019) Nppb Neurons Are Sensors of Mast Cell-Induced Itch.; Cell Rep, 26: 3561-3573.e4 |
|
GSE125626 |
| Sollinger, Christina et al. (2017) Erythropoietin Signaling Regulates Key Epigenetic and Transcription Networks in Fetal Neural Progenitor Cells.; Sci Rep, 7: 14381 |
|
GSE99372 |
| Solnestam, Beata Werne et al. (2012) Comparison of total and cytoplasmic mRNA reveals global regulation by nuclear retention and miRNAs.; BMC Genomics, 13: 574 |
|
GSE60296 |
| Solomon, Joshua D et al. (2014) VDR activity is differentially affected by Hic-5 in prostate cancer and stromal cells.; Mol Cancer Res, 12: 1166-80 |
|
GSE47354 |
| Solorio-Rodriguez, Silvia Aidee et al. (2023) Single-Walled vs. Multi-Walled Carbon Nanotubes: Influence of Physico-Chemical Properties on Toxicogenomics Responses in Mouse Lungs.; Nanomaterials (Basel), 13: [no pages] |
|
GSE223520 |
| Solouki, Abbas M et al. (2010) A genome-wide association study identifies a susceptibility locus for refractive errors and myopia at 15q14.; Nat Genet, 42: 897-901 |
|
GSE20191 |
| Solvie, Daniel et al. (2022) MYC multimers shield stalled replication forks from RNA polymerase.; Nature, 612: 148-155 |
|
GSE183094 |
| Somasundaram, Preethi et al. (2023) Coordinated stimulation of axon regenerative and neurodegenerative transcriptional programs by Atf4 following optic nerve injury.; bioRxiv, [no vol.]: [no pages] |
|
GSE223321 |
| Somel, Mehmet et al. (2008) Human and chimpanzee gene expression differences replicated in mice fed different diets.; PLoS One, 3: e1504 |
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GSE6297 GSE6285 |
| Somel, Mehmet et al. (2009) Transcriptional neoteny in the human brain.; Proc Natl Acad Sci U S A, 106: 5743-8 |
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GSE15163 GSE11528 GSE11512.1 |
| Somel, Mehmet et al. (2010) MicroRNA, mRNA, and protein expression link development and aging in human and macaque brain.; Genome Res, 20: 1207-18 |
|
GSE17757.1 |
| Somel, Mehmet et al. (2011) MicroRNA-driven developmental remodeling in the brain distinguishes humans from other primates.; PLoS Biol, 9: e1001214 |
|
GSE22521 GSE22569 |
| Somers, Sarah M et al. (2022) Engineering Skeletal Muscle Grafts with PAX7::GFP-Sorted Human Pluripotent Stem Cell-Derived Myogenic Progenitors on Fibrin Microfiber Bundles for Tissue Regeneration.; Bioengineering (Basel), 9: [no pages] |
|
GSE178784 |
| Somerville, Tim D D et al. (2015) Frequent Derepression of the Mesenchymal Transcription Factor Gene FOXC1 in Acute Myeloid Leukemia.; Cancer Cell, 28: 329-42 |
|
GSE66253 |
| Someya, Shinichi et al. (2007) Genes encoding mitochondrial respiratory chain components are profoundly down-regulated with aging in the cochlea of DBA/2J mice.; Brain Res, 1182: 26-33 |
|
GSE6045 |
| Someya, Shinichi et al. (2008) The role of mtDNA mutations in the pathogenesis of age-related hearing loss in mice carrying a mutator DNA polymerase gamma.; Neurobiol Aging, 29: 1080-92 |
|
GSE4866 |
| Sommariva, Michele et al. (2011) TLR9 agonists oppositely modulate DNA repair genes in tumor versus immune cells and enhance chemotherapy effects.; Cancer Res, 71: 6382-90 |
|
GSE23440 GSE23442 GSE23441 |
| Sommer, Daniel et al. (2022) Aging-Dependent Altered Transcriptional Programs Underlie Activity Impairments in Human C9orf72-Mutant Motor Neurons.; Front Mol Neurosci, 15: 894230 |
|
GSE201407 |
| Sompub, Kamonrapat et al. (2024) NF-κB RelA regulates temporal oligodendrocyte differentiation in the postnatal brains.; Front Cell Neurosci, 19: 1622874 |
|
GSE294303 |
| Son, A et al. (2013) TWEAK/Fn14 pathway promotes a T helper 2-type chronic colitis with fibrosis in mice.; Mucosal Immunol, 6: 1131-42 |
|
GSE36806 |
| Son, Esther Y et al. (2011) Conversion of mouse and human fibroblasts into functional spinal motor neurons.; Cell Stem Cell, 9: 205-18 |
|
GSE31160 |
| Son, Ga-Yeon et al. (2023) The Ca2+channel ORAI1 is a regulator of oral cancer growth and nociceptive pain.; Sci Signal, 16: eadf9535 |
|
GSE236706 |
| Son, Yeonghoon et al. (2025) Behavioral and neurochemical changes in mice induced by low-level lead exposure: Implications for ADHD and conduct disorders.; Ecotoxicol Environ Saf, 302: 118735 |
|
GSE275434 |
| Son, Yeonghoon et al. (2025) Effect of Low-Dose-Rate Radiation on Cognition and Gene Expression Profiles in Type II Diabetes Mellitus Mouse Model.; Mol Neurobiol, 62: 11484-11498 |
|
GSE255433 |
| Sona, Chandan et al. (2025) Glutamatergic argonaute2 promotes the formation of the neurovascular unit in mice.; Sci Signal, 18: eadl6745 |
|
GSE279548 |
| Song, Bing et al. (2019) Targeting FOXA1-mediated repression of TGF-β signaling suppresses castration-resistant prostate cancer progression.; J Clin Invest, 129: 569-582 |
|
GSE119758 |
| Song, Bryan J et al. (2025) Elevated synaptic PKA activity and abnormal striatal dopamine signaling in Akap11 mutant mice, a genetic model of schizophrenia and bipolar disorder.; Nat Commun, 16: 10793 |
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GSE272098.2 GSE272098.3 GSE272098.1 |
| Song, Changgeng et al. (2023) Aminoprocalcitonin protects against hippocampal neuronal death via preserving oxidative phosphorylation in refractory status epilepticus.; Cell Death Discov, 9: 144 |
|
GSE217955 |
| Song, Dan et al. (2024) Lin28a forms an RNA-binding complex with Igf2bp3 to regulate m6A-modified stress response genes in stress granules of muscle stem cells.; Cell Prolif, 57: e13707 |
|
GSE262720 |
| Song, Dongweon et al. (2008) Antitumor activity and molecular effects of the novel heat shock protein 90 inhibitor, IPI-504, in pancreatic cancer.; Mol Cancer Ther, 7: 3275-84 |
|
GSE12113 |
| Song, Guang-Yuan et al. (2023) A single amino acid substitution in the capsid protein of Zika virus contributes to a neurovirulent phenotype.; Nat Commun, 14: 6832 |
|
GSE226495 |
| Song, Guoxu et al. (2022) CRISPR/Cas9-mediated genetic correction reverses spinocerebellar ataxia 3 disease-associated phenotypes in differentiated cerebellar neurons.; Life Med, 1: 27-44 |
|
GSE93713 |
| Song, Hailong et al. (2016) Effects of aged garlic extract and FruArg on gene expression and signaling pathways in lipopolysaccharide-activated microglial cells.; Sci Rep, 6: 35323 |
|
GSE87531 |
| Song, Hannah W et al. (2020) Transcriptomic comparison of human and mouse brain microvessels.; Sci Rep, 10: 12358 |
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GSE142209.1 GSE142209.2 |
| Song, Hao et al. (2021) METTL3-mediated m6A RNA methylation promotes the anti-tumour immunity of natural killer cells.; Nat Commun, 12: 5522 |
|
GSE180053 |
| Song, Hongyuan et al. (2025) Endothelial protein C receptor promotes retinal neovascularization through heme catabolism.; Nat Commun, 16: 1603 |
|
GSE249130 |
| Song, Jaeseung et al. (2024) Elucidating immunological characteristics of the adenoma-carcinoma sequence in colorectal cancer patients in South Korea using a bioinformatics approach.; Sci Rep, 14: 10105 |
|
GSE154548 |
| Song, Jing et al. (2022) CBLBDeficiency in Human CD4+T Cells Results in Resistance to T Regulatory Suppression through Multiple Mechanisms.; J Immunol, 209: 1260-1271 |
|
GSE198810 |
| Song, Jingyi et al. (2023) Normobaric hypoxia shows enhanced FOXO1 signaling in obese mouse gastrocnemius muscle linked to metabolism and muscle structure and neuromuscular innervation.; Pflugers Arch, 475: 1265-1281 |
|
GSE228719 |
| Song, Michael et al. (2019) Mapping cis-regulatory chromatin contacts in neural cells links neuropsychiatric disorder risk variants to target genes.; Nat Genet, 51: 1252-1262 |
|
GSE113482 |
| Song, Min-Ae et al. (2020) Effects of Electronic Cigarette Constituents on the Human Lung: A Pilot Clinical Trial.; Cancer Prev Res (Phila), 13: 145-152 |
|
GSE138326 |
| Song, Moshi et al. (2015) Combined cardiomyocyte PKC? and PKC? gene deletion uncovers their central role in restraining developmental and reactive heart growth.; Sci Signal, 8: ra39 |
|
GSE62689 |
| Song, Sang-Hoon et al. (2022) Striatal miR-183-5p inhibits methamphetamine-induced locomotion by regulating glucocorticoid receptor signaling.; Front Pharmacol, 13: 997701 |
|
GSE211184 |
| Song, Shanshan et al. (2021) Activation of endothelial Wnt/β-catenin signaling by protective astrocytes repairs BBB damage in ischemic stroke.; Prog Neurobiol, 199: 101963 |
|
GSE145839 |
| Song, Shanshan et al. (2022) Elevated microglial oxidative phosphorylation and phagocytosis stimulate post-stroke brain remodeling and cognitive function recovery in mice.; Commun Biol, 5: 35 |
|
GSE175504 |
| Song, Shanshan et al. (2022) Microglial-oligodendrocyte interactions in myelination and neurological function recovery after traumatic brain injury.; J Neuroinflammation, 19: 246 |
|
GSE199869 |
| Song, Shuang et al. (2021) OBF1 and Oct factors control the germinal center transcriptional program.; Blood, 137: 2920-2934 |
|
GSE161838 GSE161840 |
| Song, Shujie et al. (2014) Gene silencing associated with SWI/SNF complex loss during NSCLC development.; Mol Cancer Res, 12: 560-70 |
|
GSE54033 |
| Song, Sicheng et al. (2022) Postnatal Conditional Deletion ofBcl11bin Striatal Projection Neurons Mimics the Transcriptional Signature of Huntington's Disease.; Biomedicines, 10: [no pages] |
|
GSE185476 |
| Song, Wei et al. (2022) Putative complement control protein CSMD3 dysfunction impairs synaptogenesis and induces neurodevelopmental disorders.; Brain Behav Immun, 102: 237-250 |
|
GSE186561 |
| Song, Wilbur M et al. (2018) Humanized TREM2 mice reveal microglia-intrinsic and -extrinsic effects of R47H polymorphism.; J Exp Med, 215: 745-760 |
|
GSE108595 |
| Song, Xiao et al. (2024) RNA splicing analysis deciphers developmental hierarchies and reveals therapeutic targets in adult glioma.; J Clin Invest, 134: [no pages] |
|
GSE212671 |
| Song, Xuewen et al. (2009) Systems biology of autosomal dominant polycystic kidney disease (ADPKD): computational identification of gene expression pathways and integrated regulatory networks.; Hum Mol Genet, 18: 2328-43 |
|
GSE7869 |
| Song, Yang et al. (2024) Biphasic regulation of epigenetic state by matrix stiffness during cell reprogramming.; Sci Adv, 10: eadk0639 |
|
GSE250068 |
| Song, Yuelin et al. (2019) Dynamic Enhancer DNA Methylation as Basis for Transcriptional and Cellular Heterogeneity of ESCs.; Mol Cell, 75: 905-920.e6 |
|
GSE132416 |
| Song, Yunshu et al. (2024) Isolated loss of the AUTS2 long isoform, brain-wide or targeted to Calbindin-lineage cells, generates a specific suite of brain, behavioral, and molecular pathologies.; Genetics, 226: [no pages] |
|
GSE231599 |