List of all 17,751 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Umschweif, Gali et al. (2021) Identification of Neurensin-2 as a novel modulator of emotional behavior.; Mol Psychiatry, 26: 2872-2885 |
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GSE141481 |
| Une, Hayato et al. (2021) Brain gray matter astroglia-specific connexin 43 ablation attenuates spinal cord inflammatory demyelination.; J Neuroinflammation, 18: 126 |
|
GSE148931 GSE148929 |
| Ung, D C et al. (2018) Ptchd1 deficiency induces excitatory synaptic and cognitive dysfunctions in mouse.; Mol Psychiatry, 23: 1356-1367 |
|
GSE80312 |
| Ung, Kevin et al. (2021) Olfactory bulb astrocytes mediate sensory circuit processing through Sox9 in the mouse brain.; Nat Commun, 12: 5230 |
|
GSE180841 |
| Unger, M S et al. (2020) CD8+T-cells infiltrate Alzheimer's disease brains and regulate neuronal- and synapse-related gene expression in APP-PS1 transgenic mice.; Brain Behav Immun, [no vol.]: [no pages] |
|
GSE149661 |
| Unnisa, Zeenath et al. (2012) Meis1 preserves hematopoietic stem cells in mice by limiting oxidative stress.; Blood, 120: 4973-81 |
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GSE41133 |
| Uno, Yoko et al. (2025) O-GlcNAcylation on serine 40 of histone H2A promotes proliferation and invasion in triple-negative breast cancer.; Sci Rep, 15: 10170 |
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GSE274331 |
| Unruh, Dusten et al. (2015) Red Blood Cell Dysfunction Induced by High-Fat Diet: Potential Implications for Obesity-Related Atherosclerosis.; Circulation, 132: 1898-908 |
|
GSE50240 |
| Ural, Basak B et al. (2020) Identification of a nerve-associated, lung-resident interstitial macrophage subset with distinct localization and immunoregulatory properties.; Sci Immunol, 5: [no pages] |
|
GSE146681 |
| Urata, Yuri Nagamine et al. (2014) Calcitriol supplementation effects on Ki67 expression and transcriptional profile of breast cancer specimens from post-menopausal patients.; Clin Nutr, 33: 136-42 |
|
GSE35925 |
| Uray, Karen S et al. (2010) Nuclear factor-kappaB activation by edema inhibits intestinal contractile activity.; Crit Care Med, 38: 861-70 |
|
GSE13193 |
| Urbach, Laura et al. (2025) TP53missense-specific transcriptional plasticity drives resistance against cell cycle inhibitors in pancreatic cancer.; Sci Adv, 11: eadu2339 |
|
GSE291033 |
| Urban, Inga et al. (2019) TIP60/KAT5 is required for neuronal viability in hippocampal CA1.; Sci Rep, 9: 16173 |
|
GSE139298 |
| Urban, Stina L et al. (2020) Peripherally induced brain tissue-resident memory CD8+T cells mediate protection against CNS infection.; Nat Immunol, 21: 938-949 |
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GSE146077 |
| Urbanski, Laura et al. (2022) MYC regulates a pan-cancer network of co-expressed oncogenic splicing factors.; Cell Rep, 41: 111704 |
|
GSE181968 |
| Urbanucci, Alfonso et al. (2017) Androgen Receptor Deregulation Drives Bromodomain-Mediated Chromatin Alterations in Prostate Cancer.; Cell Rep, 19: 2045-2059 |
|
GSE73930 |
| Urdinguio, Rocio G et al. (2008) Mecp2-null mice provide new neuronal targets for Rett syndrome.; PLoS One, 3: e3669 |
|
GSE11596 |
| Uren, Philip J et al. (2014) A profile of transcriptomic changes in the rd10 mouse model of retinitis pigmentosa.; Mol Vis, 20: 1612-28 |
|
GSE56473 |
| Uren, Philip J et al. (2015) RNA-Binding Protein Musashi1 Is a Central Regulator of Adhesion Pathways in Glioblastoma.; Mol Cell Biol, 35: 2965-78 |
|
GSE68800 |
| Uribesalgo, Iris et al. (2011) E-box-independent regulation of transcription and differentiation by MYC.; Nat Cell Biol, 13: 1443-9 |
|
GSE24731 |
| Uronis, Joshua M et al. (2012) Histological and molecular evaluation of patient-derived colorectal cancer explants.; PLoS One, 7: e38422 |
|
GSE35144 |
| Urquidi, Virginia et al. (2012) A candidate molecular biomarker panel for the detection of bladder cancer.; Cancer Epidemiol Biomarkers Prev, 21: 2149-58 |
|
GSE31189 |
| Urresti, Jorge et al. (2021) Correction: Cortical organoids model early brain development disrupted by 16p11.2 copy number variants in autism.; Mol Psychiatry, [no vol.]: [no pages] |
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GSE142174 |
| Urso, Maria L et al. (2006) Analysis of human skeletal muscle after 48 h immobilization reveals alterations in mRNA and protein for extracellular matrix components.; J Appl Physiol (1985), 101: 1136-48 |
|
GSE5110 |
| Usenko, Tatiana et al. (2021) Comparative Transcriptome Analysis in Monocyte-Derived Macrophages of AsymptomaticGBAMutation Carriers and Patients with GBA-Associated Parkinson's Disease.; Genes (Basel), 12: [no pages] |
|
GSE184956 |
| Uslu, Veli Vural et al. (2014) Long-range enhancers regulating Myc expression are required for normal facial morphogenesis.; Nat Genet, 46: 753-8 |
|
GSE52974 |
| Usui, Noriyoshi et al. (2017) Foxp1 regulation of neonatal vocalizations via cortical development.; Genes Dev, 31: 2039-2055 |
|
GSE98913.2 |
| Usui, Noriyoshi et al. (2021) Early Life Stress Alters Gene Expression and Cytoarchitecture in the Prefrontal Cortex Leading to Social Impairment and Increased Anxiety.; Front Genet, 12: 754198 |
|
GSE180055 |
| Usui, Noriyoshi et al. (2021) Zbtb16 regulates social cognitive behaviors and neocortical development.; Transl Psychiatry, 11: 242 |
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GSE155424 |
| Utami, Kagistia Hana et al. (2020) Integrative Analysis Identifies Key Molecular Signatures Underlying Neurodevelopmental Deficits in Fragile X Syndrome.; Biol Psychiatry, 88: 500-511 |
|
GSE117248 |
| Utz, Sebastian G et al. (2020) Early Fate Defines Microglia and Non-parenchymal Brain Macrophage Development.; Cell, 181: 557-573.e18 |
|
GSE146928 |
| Uyhelji, Hilary A et al. (2018) Exploring gene expression biomarker candidates for neurobehavioral impairment from total sleep deprivation.; BMC Genomics, 19: 341 |
|
GSE98566 GSE98564 GSE98565 |
| Uzonyi, Barbara et al. (2006) Cysteinyl leukotriene 2 receptor and protease-activated receptor 1 activate strongly correlated early genes in human endothelial cells.; Proc Natl Acad Sci U S A, 103: 6326-31 |
|
GSE3589 |
| Vacher, Claire-Marie et al. (2021) Placental endocrine function shapes cerebellar development and social behavior.; Nat Neurosci, [no vol.]: [no pages] |
|
GSE173440 |
| Vadasz, Csaba et al. (2007) Glutamate receptor metabotropic 7 is cis-regulated in the mouse brain and modulates alcohol drinking.; Genomics, 90: 690-702 |
|
GSE7155 |
| Vadodaria, Krishna C et al. (2019) Altered serotonergic circuitry in SSRI-resistant major depressive disorder patient-derived neurons.; Mol Psychiatry, 24: 808-818 |
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GSE126512 |
| Vadodaria, Krishna C et al. (2019) Serotonin-induced hyperactivity in SSRI-resistant major depressive disorder patient-derived neurons.; Mol Psychiatry, 24: 795-807 |
|
GSE125664 |
| Vadodaria, Krishna C et al. (2021) Altered Neuronal Support and Inflammatory Response in Bipolar Disorder Patient-Derived Astrocytes.; Stem Cell Reports, 16: 825-835 |
|
GSE157509 |
| Vaganova, Anastasia N et al. (2024) Knocking Out TAAR5: A Pathway to Enhanced Neurogenesis and Dopamine Signaling in the Striatum.; Cells, 13: [no pages] |
|
GSE276664 |
| Vagena, Eirini et al. (2019) A high-fat diet promotes depression-like behavior in mice by suppressing hypothalamic PKA signaling.; Transl Psychiatry, 9: 141 |
|
GSE127056 |
| Vagena, Eirini et al. (2022) ASB4 modulates central melanocortinergic neurons and calcitonin signaling to control satiety and glucose homeostasis.; Sci Signal, 15: eabj8204 |
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GSE139148 |
| Vagnozzi, Alicia N et al. (2020) Phrenic-specific transcriptional programs shape respiratory motor output.; Elife, 9: [no pages] |
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GSE138085 |
| Vahedi, Golnaz et al. (2012) STATs shape the active enhancer landscape of T cell populations.; Cell, 151: 981-93 |
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GSE40463 |
| Vahedi, Golnaz et al. (2015) Super-enhancers delineate disease-associated regulatory nodes in T cells.; Nature, 520: 558-62 |
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GSE60482.2 GSE60482.1 |
| Vahey, Maryanne T et al. (2002) Impact of viral infection on the gene expression profiles of proliferating normal human peripheral blood mononuclear cells infected with HIV type 1 RF.; AIDS Res Hum Retroviruses, 18: 179-92 |
|
GSE511 |
| Vahey, Maryanne T et al. (2008) CD4+ T-cell decline after the interruption of antiretroviral therapy in ACTG A5170 is predicted by differential expression of genes in the ras signaling pathway.; AIDS Res Hum Retroviruses, 24: 1047-66 |
|
GSE10924 |
| Vahsen, Björn F et al. (2022) Human iPSC co-culture model to investigate the interaction between microglia and motor neurons.; Sci Rep, 12: 12606 |
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GSE200037 |
| Vahsen, Björn F et al. (2023) C9orf72-ALS human iPSC microglia are pro-inflammatory and toxic to co-cultured motor neurons via MMP9.; Nat Commun, 14: 5898 |
|
GSE217625 |
| Vahsen, Björn Friedhelm et al. (2020) Inhibition of the autophagic protein ULK1 attenuates axonal degeneration in vitro and in vivo, enhances translation, and modulates splicing.; Cell Death Differ, 27: 2810-2827 |
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GSE123687 |
| Vaid, Samir et al. (2018) A novel population of Hopx-dependent basal radial glial cells in the developing mouse neocortex.; Development, 145: [no pages] |
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GSE121008 |
| Vainchtein, Ilia D et al. (2018) Astrocyte-derived interleukin-33 promotes microglial synapse engulfment and neural circuit development.; Science, 359: 1269-1273 |
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GSE109352 GSE109353 |
| Vainchtein, Ilia D et al. (2023) Characterizing microglial gene expression in a model of secondary progressive multiple sclerosis.; Glia, 71: 588-601 |
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GSE194071 |
| Vainorius, Gintautas et al. (2023) Ascl1 and Ngn2 convert mouse embryonic stem cells to neurons via functionally distinct paths.; Nat Commun, 14: 5341 |
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GSE208199 GSE206870 |
| Vaishnav, Radhika A et al. (2008) Cellular and molecular characterization of oxidative stress in olfactory epithelium of Harlequin mutant mouse.; J Neurosci Res, 86: 165-82 |
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GSE6485 |
| Vaisitti, T et al. (2015) The enzymatic activities of CD38 enhance CLL growth and trafficking: implications for therapeutic targeting.; Leukemia, 29: 356-68 |
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GSE56369 |
| Valassina, Nicholas et al. (2022) Scn1a gene reactivation after symptom onset rescues pathological phenotypes in a mouse model of Dravet syndrome.; Nat Commun, 13: 161 |
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GSE171191 |
| Valcarcel-Jimenez, Lorea et al. (2018) Integrative analysis of transcriptomics and clinical data uncovers the tumor-suppressive activity of MITF in prostate cancer.; Cell Death Dis, 9: 1041 |
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GSE114345 |
| Valcz, Gábor et al. (2014) Myofibroblast-derived SFRP1 as potential inhibitor of colorectal carcinoma field effect.; PLoS One, 9: e106143 |
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GSE37364 |
| Valdes, Phoebe et al. (2023) Limitations of the human iPSC-derived neuron model for early-onset Alzheimer's disease.; Mol Brain, 16: 75 |
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GSE231341 |
| Valdes, Phoebe et al. (2025) Integrative multiomics reveals common endotypes across PSEN1, PSEN2, and APP mutations in familial Alzheimer's disease.; Alzheimers Res Ther, 17: 5 |
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GSE206602 |
| Valdora, Francesca et al. (2013) Epigenetic Silencing of DKK3 in Medulloblastoma.; Int J Mol Sci, 14: 7492-505 |
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GSE39182 |
| Valek, Lucie et al. (2021) Prodromal sensory neuropathy in Pink1-/-SNCAA53Tdouble mutant Parkinson mice.; Neuropathol Appl Neurobiol, 47: 1060-1079 |
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GSE146091 |
| Valente, Liz J et al. (2020) p53 deficiency triggers dysregulation of diverse cellular processes in physiological oxygen.; J Cell Biol, 219: [no pages] |
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GSE136355 |
| Valentijn, Linda J et al. (2012) Functional MYCN signature predicts outcome of neuroblastoma irrespective of MYCN amplification.; Proc Natl Acad Sci U S A, 109: 19190-5 |
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GSE39218 |
| Valentijn, Linda J et al. (2015) TERT rearrangements are frequent in neuroblastoma and identify aggressive tumors.; Nat Genet, 47: 1411-4 |
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GSE73537 |
| Valentin-Vega, Yasmine A et al. (2016) Cancer-associated DDX3X mutations drive stress granule assembly and impair global translation.; Sci Rep, 6: 25996 |
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GSE59093 |
| Valentino, Sarah A et al. (2021) Exposure to TiO2Nanostructured Aerosol Induces Specific Gene Expression Profile Modifications in the Lungs of Young and Elderly Rats.; Nanomaterials (Basel), 11: [no pages] |
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GSE145479 |
| Valinciute, Gintvile et al. (2023) Class I HDAC inhibitor entinostat synergizes with PLK1 inhibitors in MYC-amplified medulloblastoma cells.; J Neurooncol, 163: 143-158 |
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GSE220748 |
| Valisno, Jeff Arni C et al. (2021) BCL11B Regulates Arterial Stiffness and Related Target Organ Damage.; Circ Res, 128: 755-768 |
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GSE163551 |
| Valiulahi, Parvin et al. (2021) Generation of caudal-type serotonin neurons and hindbrain-fate organoids from hPSCs.; Stem Cell Reports, [no vol.]: [no pages] |
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GSE167278 |
| Vallacchi, Viviana et al. (2014) Transcriptional profiling of melanoma sentinel nodes identify patients with poor outcome and reveal an association of CD30(+) T lymphocytes with progression.; Cancer Res, 74: 130-40 |
|
GSE39945 |
| Vallanat, Beena et al. (2010) Analysis of the heat shock response in mouse liver reveals transcriptional dependence on the nuclear receptor peroxisome proliferator-activated receptor alpha (PPARalpha).; BMC Genomics, 11: 16 |
|
GSE14869 |
| Vallat, Laurent et al. (2013) Reverse-engineering the genetic circuitry of a cancer cell with predicted intervention in chronic lymphocytic leukemia.; Proc Natl Acad Sci U S A, 110: 459-64 |
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GSE39411 |
| Vallecillo-García, Pedro et al. (2024) Mesenchymal Osr1+ cells regulate embryonic lymphatic vessel formation.; Development, 151: [no pages] |
|
GSE269397 |
| Vallejo-Gracia, Albert et al. (2020) FOXO1 promotes HIV latency by suppressing ER stress in T cells.; Nat Microbiol, 5: 1144-1157 |
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GSE129522 |
| Vallianatos, Christina N et al. (2020) Mutually suppressive roles of KMT2A and KDM5C in behaviour, neuronal structure, and histone H3K4 methylation.; Commun Biol, 3: 278 |
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GSE127722 |
| Valor, L M et al. (2010) Ultrastructural and transcriptional profiling of neuropathological misregulation of CREB function.; Cell Death Differ, 17: 1636-44 |
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GSE21137 |
| Valor, Luis M et al. (2013) Genomic landscape of transcriptional and epigenetic dysregulation in early onset polyglutamine disease.; J Neurosci, 33: 10471-82 |
|
GSE44306 |
| van 't Veer, Laura J et al. (2002) Gene expression profiling predicts clinical outcome of breast cancer.; Nature, 415: 530-6 |
|
vantveer-breast |
| van Baarle, Lies et al. (2024) IL-1R signaling drives enteric glia-macrophage interactions in colorectal cancer.; Nat Commun, 15: 6079 |
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GSE231802 GSE231709 |
| van Baarlen, Peter et al. (2009) Differential NF-kappaB pathways induction by Lactobacillus plantarum in the duodenum of healthy humans correlating with immune tolerance.; Proc Natl Acad Sci U S A, 106: 2371-6 |
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GSE11355 |
| van Berlo, Jop H et al. (2011) Serine 105 phosphorylation of transcription factor GATA4 is necessary for stress-induced cardiac hypertrophy in vivo.; Proc Natl Acad Sci U S A, 108: 12331-6 |
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GSE30314 |
| van Berlo, Jop H et al. (2013) Parsing the roles of the transcription factors GATA-4 and GATA-6 in the adult cardiac hypertrophic response.; PLoS One, 8: e84591 |
|
GSE52317 |
| van Beveren, Nico J M et al. (2012) Marked reduction of AKT1 expression and deregulation of AKT1-associated pathways in peripheral blood mononuclear cells of schizophrenia patients.; PLoS One, 7: e32618 |
|
GSE27383 |
| van Bragt, Maaike P A et al. (2014) RUNX1, a transcription factor mutated in breast cancer, controls the fate of ER-positive mammary luminal cells.; Elife, 3: e03881 |
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GSE47375 |
| van Breda, Simone G J et al. (2018) Integrative omics data analyses of repeated dose toxicity of valproic acid in vitro reveal new mechanisms of steatosis induction.; Toxicology, 393: 160-170 |
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GSE84150 |
| van Bree, Elisabeth J et al. (2022) A hidden layer of structural variation in transposable elements reveals potential genetic modifiers in human disease-risk loci.; Genome Res, 32: 656-670 |
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GSE167409 |
| van Bree, Niek et al. (2024) Development of an orthotopic medulloblastoma zebrafish model for rapid drug testing.; Neuro Oncol, [no vol.]: [no pages] |
|
GSE271361 |
| Van Breedam, Elise et al. (2023) Lack of strong innate immune reactivity renders macrophages alone unable to control productive Varicella-Zoster Virus infection in an isogenic human iPSC-derived neuronal co-culture model.; Front Immunol, 14: 1177245 |
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GSE228390.2 GSE228390.1 |
| Van Bussel, I P G et al. (2017) The impact of protein quantity during energy restriction on genome-wide gene expression in adipose tissue of obese humans.; Int J Obes (Lond), 41: 1114-1120 |
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GSE84046 |
| van de Garde, Martijn D B et al. (2014) Chronic exposure to glucocorticoids shapes gene expression and modulates innate and adaptive activation pathways in macrophages with distinct changes in leukocyte attraction.; J Immunol, 192: 1196-208 |
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GSE49706 GSE49709 |