List of all 17,751 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Tuddenham, John F et al. (2024) A cross-disease resource of living human microglia identifies disease-enriched subsets and tool compounds recapitulating microglial states.; Nat Neurosci, [no vol.]: [no pages] |
|
GSE202556 |
| Tuesta, Luis M et al. (2019) In vivo nuclear capture and molecular profiling identifies Gmeb1 as a transcriptional regulator essential for dopamine neuron function.; Nat Commun, 10: 2508 |
|
GSE106956 |
| Tufan, Turan et al. (2024) Rapid unleashing of macrophage efferocytic capacity via transcriptional pause release.; Nature, 628: 408-415 |
|
GSE253577 |
| Tufegdžić Vidaković, Ana et al. (2020) Regulation of the RNAPII Pool Is Integral to the DNA Damage Response.; Cell, 180: 1245-1261.e21 |
|
GSE143537 |
| Tulacz, Dorota et al. (2013) Transcriptional profiling of left ventricle and peripheral blood mononuclear cells in a rat model of postinfarction heart failure.; BMC Med Genomics, 6: 49 |
|
GSE47495 |
| Tumes, Damon J et al. (2013) The polycomb protein Ezh2 regulates differentiation and plasticity of CD4(+) T helper type 1 and type 2 cells.; Immunity, 39: 819-32 |
|
GSE50729 |
| Tummala, Krishna S et al. (2014) Inhibition of de novo NAD(+) synthesis by oncogenic URI causes liver tumorigenesis through DNA damage.; Cancer Cell, 26: 826-39 |
|
GSE48654 |
| Tun, Han W et al. (2008) Pathway analysis of primary central nervous system lymphoma.; Blood, 111: 3200-10 |
|
GSE11392 |
| Tunbak, Hale et al. (2020) The HUSH complex is a gatekeeper of type I interferon through epigenetic regulation of LINE-1s.; Nat Commun, 11: 5387 |
|
GSE135765 |
| Tung, Celestine S et al. (2009) PAX2 expression in low malignant potential ovarian tumors and low-grade ovarian serous carcinomas.; Mod Pathol, 22: 1243-50 |
|
GSE14001 |
| Tung, Lin Tze et al. (2021) p53-dependent induction of P2X7 on hematopoietic stem and progenitor cells regulates hematopoietic response to genotoxic stress.; Cell Death Dis, 12: 923 |
|
GSE171691 |
| Tung, Ying-Tsen et al. (2015) Mir-17?92 Governs Motor Neuron Subtype Survival by Mediating Nuclear PTEN.; Cell Rep, 11: 1305-18 |
|
GSE67795 |
| Tuoc, Tran Cong et al. (2013) Chromatin regulation by BAF170 controls cerebral cortical size and thickness.; Dev Cell, 25: 256-69 |
|
GSE45629 |
| Tuomela, Soile et al. (2012) Identification of early gene expression changes during human Th17 cell differentiation.; Blood, 119: e151-60 |
|
GSE35103 |
| Tuomela, Soile et al. (2013) Gene expression profiling of immune-competent human cells exposed to engineered zinc oxide or titanium dioxide nanoparticles.; PLoS One, 8: e68415 |
|
GSE39316 |
| Turan, Nil et al. (2011) A systems biology approach identifies molecular networks defining skeletal muscle abnormalities in chronic obstructive pulmonary disease.; PLoS Comput Biol, 7: e1002129 |
|
GSE27536 |
| Turashvili, Gulisa et al. (2007) Novel markers for differentiation of lobular and ductal invasive breast carcinomas by laser microdissection and microarray analysis.; BMC Cancer, 7: 55 |
|
GSE5764 |
| Turcan, Sevin et al. (2010) Lack of nAChR activity depresses cochlear maturation and up-regulates GABA system components: temporal profiling of gene expression in alpha9 null mice.; PLoS One, 5: e9058 |
|
GSE18567 |
| Turcan, Sevin et al. (2018) Mutant-IDH1-dependent chromatin state reprogramming, reversibility, and persistence.; Nat Genet, 50: 62-72 |
|
GSE85939 |
| Turco, Anne E et al. (2021) A mechanism linking perinatal 2,3,7,8 tetrachlorodibenzo-p-dioxin exposure to lower urinary tract dysfunction in adulthood.; Dis Model Mech, 14: [no pages] |
|
GSE166395 |
| Turcotte, Moriah Gildart et al. (2025) Unique Role of Intracellular Perinuclear β1-Adrenergic Receptors in Defining Signaling Compartmentation and Pathological Cardiac Remodeling.; Circulation, 152: 682-698 |
|
GSE305499 |
| Turelli, Priscilla et al. (2020) Primate-restricted KRAB zinc finger proteins and target retrotransposons control gene expression in human neurons.; Sci Adv, 6: eaba3200 |
|
GSE144151 GSE144152 |
| Turetz, Meredith L et al. (2009) Trachea epithelium as a "canary" for cigarette smoking-induced biologic phenotype of the small airway epithelium.; Clin Transl Sci, 2: 260-72 |
|
GSE13933 |
| Turgeon, Naomie et al. (2014) The acetylome regulators Hdac1 and Hdac2 differently modulate intestinal epithelial cell dependent homeostatic responses in experimental colitis.; Am J Physiol Gastrointest Liver Physiol, 306: G594-605 |
|
GSE54785 |
| Turi, Marcello et al. (2023) Transcriptome Analysis of Diffuse Large B-Cell Lymphoma Cells Inducibly Expressing MyD88 L265P Mutation Identifies Upregulated CD44, LGALS3, NFKBIZ, and BATF as Downstream Targets of Oncogenic NF-κB Signaling.; Int J Mol Sci, 24: [no pages] |
|
GSE226797 |
| Turkheimer, Federico E et al. (2006) Chromosomal patterns of gene expression from microarray data: methodology, validation and clinical relevance in gliomas.; BMC Bioinformatics, 7: 526 |
|
GSE2817 |
| Turner, Leslie M et al. (2014) Genomic networks of hybrid sterility.; PLoS Genet, 10: e1004162 |
|
GSE54089 |
| Turner, S M F et al. (2016) Transcriptome assessment of the Pompe (Gaa-/-) mouse spinal cord indicates widespread neuropathology.; Physiol Genomics, 48: 785-794 |
|
GSE82081 |
| Turner, Sara M F et al. (2022) Hyperbaric Oxygen Therapy after Mid-Cervical Spinal Contusion Injury.; J Neurotrauma, 39: 715-723 |
|
GSE185600 |
| Turrero García, Miguel et al. (2020) Transcriptional regulation of MGE progenitor proliferation by PRDM16 controls cortical GABAergic interneuron production.; Development, 147: [no pages] |
|
GSE159728 |
| Turtle, Cameron J et al. (2011) Innate signals overcome acquired TCR signaling pathway regulation and govern the fate of human CD161(hi) CD8?? semi-invariant T cells.; Blood, 118: 2752-62 |
|
GSE23663 |
| Tutino, Vincent M et al. (2018) Circulating neutrophil transcriptome may reveal intracranial aneurysm signature.; PLoS One, 13: e0191407 |
|
GSE106520 |
| Tuvim, Michael J et al. (2009) Augmented lung inflammation protects against influenza A pneumonia.; PLoS One, 4: e4176 |
|
GSE13740 |
| Tuvim, Michael J et al. (2012) Synergistic TLR2/6 and TLR9 activation protects mice against lethal influenza pneumonia.; PLoS One, 7: e30596 |
|
GSE28994 |
| Tveriakhina, Lena et al. (2024) Temporal dynamics and stoichiometry in human Notch signaling from Notch synaptic complex formation to nuclear entry of the Notch intracellular domain.; Dev Cell, [no vol.]: [no pages] |
|
GSE235637 |
| Tvrdik, Petr et al. (2006) Reversal of Hox1 gene subfunctionalization in the mouse.; Dev Cell, 11: 239-50 |
|
GSE5124 GSE5126 |
| Tweedie, David et al. (2013) Changes in mouse cognition and hippocampal gene expression observed in a mild physical- and blast-traumatic brain injury.; Neurobiol Dis, [no vol.]: [no pages] |
|
GSE44625 |
| Tweedie, David et al. (2013) Exendin-4, a glucagon-like peptide-1 receptor agonist prevents mTBI-induced changes in hippocampus gene expression and memory deficits in mice.; Exp Neurol, [no vol.]: [no pages] |
|
GSE41345 |
| Tweedie, David et al. (2016) Blast traumatic brain injury-induced cognitive deficits are attenuated by preinjury or postinjury treatment with the glucagon-like peptide-1 receptor agonist, exendin-4.; Alzheimers Dement, 12: 34-48 |
|
GSE71846 |
| Tyagi, Alpna et al. (2022) Sirt3 deficiency induced down regulation of insulin degrading enzyme in comorbid Alzheimer's disease with metabolic syndrome.; Sci Rep, 12: 19808 |
|
GSE216081 |
| Tyagi, Witty et al. (2024) Temporal regulation of acetylation status determines PARP1 role in DNA damage response and metabolic homeostasis.; Sci Adv, 10: eado7720 |
|
GSE269944 |
| Tyshkovskiy, Alexander et al. (2019) Identification and Application of Gene Expression Signatures Associated with Lifespan Extension.; Cell Metab, 30: 573-593.e8 |
|
GSE131754 GSE131868 |
| Tyssowski, Kelsey M et al. (2018) Different Neuronal Activity Patterns Induce Different Gene Expression Programs.; Neuron, 98: 530-546.e11 |
|
GSE111899 |
| Tyzack, Giulia E et al. (2017) A neuroprotective astrocyte state is induced by neuronal signal EphB1 but fails in ALS models.; Nat Commun, 8: 1164 |
|
GSE102903 |
| Tyzack, Giulia E et al. (2021) Aberrant cytoplasmic intron retention is a blueprint for RNA binding protein mislocalization in VCP-related amyotrophic lateral sclerosis.; Brain, 144: 1985-1993 |
|
GSE152983 |
| Tzeng, Christopher P et al. (2023) Activity-induced MeCP2 phosphorylation regulates retinogeniculate synapse refinement.; Proc Natl Acad Sci U S A, 120: e2310344120 |
|
GSE245022 |
| Türker, Fulya et al. (2024) Neuronal membrane proteasome-derived peptides modulate NMDAR-dependent neuronal signaling to promote changes in gene expression.; Mol Biol Cell, 35: ar6 |
|
GSE227371 |
| Týcová, Irena et al. (2016) Molecular patterns of diffuse and nodular parathyroid hyperplasia in long-term hemodialysis.; Am J Physiol Endocrinol Metab, 311: E720-E729 |
|
GSE75886 |
| Uaesoontrachoon, Kitipong et al. (2013) The effects of MyD88 deficiency on disease phenotype in dysferlin-deficient A/J mice: role of endogenous TLR ligands.; J Pathol, 231: 199-209 |
|
GSE46420 |
| Ubina, Teresa et al. (2019) A Human Embryonic Stem Cell Model of Aβ-Dependent Chronic Progressive Neurodegeneration.; Front Neurosci, 13: 1007 |
|
GSE119527 |
| Uccellini, Melissa B et al. (2020) Passenger Mutations Confound Phenotypes of SARM1-Deficient Mice.; Cell Rep, 31: 107498 |
|
GSE136221 |
| Uchida, Kenzo et al. (2010) Microarray analysis of expression of cell death-associated genes in rat spinal cord cells exposed to cyclic tensile stresses in vitro.; BMC Neurosci, 11: 84 |
|
GSE22791 |
| Uchiyama, Akihiko et al. (2019) SOX2 Epidermal Overexpression Promotes Cutaneous Wound Healing via Activation of EGFR/MEK/ERK Signaling Mediated by EGFR Ligands.; J Invest Dermatol, 139: 1809-1820.e8 |
|
GSE118859 |
| Udawant, Shreya et al. (2021) PI3K Pathway Inhibition with NVP-BEZ235 Hinders Glycolytic Metabolism in Glioblastoma Multiforme Cells.; Cells, 10: [no pages] |
|
GSE179667 |
| Uddin, Shahab et al. (2011) Genome-wide expression analysis of Middle Eastern colorectal cancer reveals FOXM1 as a novel target for cancer therapy.; Am J Pathol, 178: 537-47 |
|
GSE23878 |
| Udeochu, Joe C et al. (2023) Tau activation of microglial cGAS-IFN reduces MEF2C-mediated cognitive resilience.; Nat Neurosci, 26: 737-750 |
|
GSE226380.1 GSE226380.2 |
| Ueda, Yuto et al. (2011) Hippocampal gene network analysis suggests that coral calcium hydride may reduce accelerated senescence in mice.; Nutr Res, 31: 863-72 |
|
GSE31606 |
| Ueda, Yuto et al. (2012) Effect of zonisamide co-administration with levodopa on global gene expression in the striata of rats with Parkinson's disease.; Biochem Biophys Res Commun, 428: 401-4 |
|
GSE39980 |
| Ueda, Yuto et al. (2013) Hippocampal gene expression profiling in a rat model of posttraumatic epilepsy reveals temporal upregulation of lipid metabolism-related genes.; Neurochem Res, [no vol.]: [no pages] |
|
GSE40490 |
| Ueha, R et al. (2021) ACE2, TMPRSS2, and Furin expression in the nose and olfactory bulb in mice and humans.; Rhinology, 59: 105-109 |
|
GSE150694 |
| Uehara, Taisuke et al. (2017) Selective degradation of splicing factor CAPERα by anticancer sulfonamides.; Nat Chem Biol, 13: 675-680 |
|
GSE93829 |
| Uehara, Yoshihiko et al. (2010) Gene expression profiles in mouse liver after long-term low-dose-rate irradiation with gamma rays.; Radiat Res, 174: 611-7 |
|
GSE20562 |
| Ueno, Kazuko et al. (2016) Transition of differential histone H3 methylation in photoreceptors and other retinal cells during retinal differentiation.; Sci Rep, 6: 29264 |
|
GSE71463 GSE71462 |
| Ufartes, Roser et al. (2013) Behavioural and functional characterization of Kv10.1 (Eag1) knockout mice.; Hum Mol Genet, 22: 2247-62 |
|
GSE44110 |
| Ugalde, Maria Vera et al. (2023) Localized molecular chaperone synthesis maintains neuronal dendrite proteostasis.; Res Sq, [no vol.]: [no pages] |
|
GSE202202 |
| Ugale, Amol et al. (2014) Hematopoietic stem cells are intrinsically protected against MLL-ENL-mediated transformation.; Cell Rep, 9: 1246-55 |
|
GSE62734 |
| Uhde, Ann-Kathrin et al. (2018) Intact interleukin-10 receptor signaling protects from hippocampal damage elicited by experimental neurotropic virus infection of SJL mice.; Sci Rep, 8: 6106 |
|
GSE103698 |
| Uhlitz, Florian et al. (2017) An immediate-late gene expression module decodes ERK signal duration.; Mol Syst Biol, 13: 928 |
|
GSE93610 GSE72919 |
| Uittenbogaard, Martine et al. (2010) NeuroD6 genomic signature bridging neuronal differentiation to survival via the molecular chaperone network.; J Neurosci Res, [no vol.]: [no pages] |
|
GSE15942 |
| Ulirsch, Jacob C et al. (2016) Systematic Functional Dissection of Common Genetic Variation Affecting Red Blood Cell Traits.; Cell, 165: 1530-1545 |
|
GSE70531 |
| Ulisse, Valeria et al. (2020) Regulation of axonal morphogenesis by the mitochondrial protein Efhd1.; Life Sci Alliance, 3: [no pages] |
|
GSE146756 |
| Ullah, Ubaid et al. (2012) Gene set enrichment analysis identifies LIF as a negative regulator of human Th2 cell differentiation.; Sci Rep, 2: 464 |
|
GSE16022 |
| Ulland, Tyler K et al. (2017) TREM2 Maintains Microglial Metabolic Fitness in Alzheimer's Disease.; Cell, 170: 649-663.e13 |
|
GSE98563 |
| Ulleryd, Marcus A et al. (2020) RNA sequencing data describing transcriptional changes in aorta of ApoE-/- mice after alpha 7 nicotinic acetylcholine receptor (α7nAChR) stimulation.; Data Brief, 30: 105415 |
|
GSE131162 |
| Ullman, Julie C et al. (2020) Brain delivery and activity of a lysosomal enzyme using a blood-brain barrier transport vehicle in mice.; Sci Transl Med, 12: [no pages] |
|
GSE139000 GSE139001 |
| Ulloa Severino, Francesco Paolo et al. (2023) Training-induced circuit-specific excitatory synaptogenesis in mice is required for effort control.; Nat Commun, 14: 5522 |
|
GSE169392 |
| Ulloa-Montoya, Fernando et al. (2013) Predictive gene signature in MAGE-A3 antigen-specific cancer immunotherapy.; J Clin Oncol, 31: 2388-95 |
|
GSE35640 |
| Ulluwishewa, Dulantha et al. (2015) Live Faecalibacterium prausnitzii in an apical anaerobic model of the intestinal epithelial barrier.; Cell Microbiol, 17: 226-40 |
|
GSE49900 |
| Ulmasov, Barbara et al. (2013) Differences in the degree of cerulein-induced chronic pancreatitis in C57BL/6 mouse substrains lead to new insights in identification of potential risk factors in the development of chronic pancreatitis.; Am J Pathol, 183: 692-708 |
|
GSE41418 |
| Ulmke, Pauline Antonie et al. (2021) Molecular Profiling Reveals Involvement of ESCO2 in Intermediate Progenitor Cell Maintenance in the Developing Mouse Cortex.; Stem Cell Reports, 16: 968-984 |
|
GSE168298 |
| Ulrich, Jason D et al. (2018) ApoE facilitates the microglial response to amyloid plaque pathology.; J Exp Med, 215: 1047-1058 |
|
GSE109906 |
| Ulrich-Lai, Yvonne M et al. (2010) Pleasurable behaviors reduce stress via brain reward pathways.; Proc Natl Acad Sci U S A, 107: 20529-34 |
|
GSE20344 |
| Ulschmid, Caden M et al. (2024) Disruption of DNA methylation-mediated cranial neural crest proliferation and differentiation causes orofacial clefts in mice.; Proc Natl Acad Sci U S A, 121: e2317668121 |
|
GSE250370 |
| Umansky, Kfir Baruch et al. (2015) Genomic-wide transcriptional profiling in primary myoblasts reveals Runx1-regulated genes in muscle regeneration.; Genom Data, 6: 120-2 |
|
GSE55556 GSE68998 |
| Umbaugh, Charles S et al. (2025) Selective targeting of TBXT with DARPins identifies regulatory networks and therapeutic vulnerabilities in chordoma.; Sci Adv, 11: eadu2796 |
|
GSE276715 |
| Umeda, Katsutsugu et al. (2015) Long-term expandable SOX9+ chondrogenic ectomesenchymal cells from human pluripotent stem cells.; Stem Cell Reports, 4: 712-26 |
|
GSE64752 |
| Umei, Tomohiko C et al. (2017) Single-Construct Polycistronic Doxycycline-Inducible Vectors Improve Direct Cardiac Reprogramming and Can Be Used to Identify the Critical Timing of Transgene Expression.; Int J Mol Sci, 18: [no pages] |
|
GSE101578 |
| Umei, Tomohiko C et al. (2025) Serine synthesis pathway regulates cardiac differentiation from human pluripotent stem cells.; iScience, 28: 112843 |
|
GSE290355 |
| Umemura, S et al. (2009) Overexpression of E2F-5 correlates with a pathological basal phenotype and a worse clinical outcome.; Br J Cancer, 100: 764-71 |
|
GSE6367 |
| Umemura, Yasuhiro et al. (2014) Transcriptional program of Kpna2/Importin-?2 regulates cellular differentiation-coupled circadian clock development in mammalian cells.; Proc Natl Acad Sci U S A, 111: E5039-48 |
|
GSE61184 GSE61096 |
| Umschweif, Gali et al. (2021) Identification of Neurensin-2 as a novel modulator of emotional behavior.; Mol Psychiatry, 26: 2872-2885 |
|
GSE141483 |