List of all 21,870 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Simandi, Zoltan et al. (2015) PRMT1 and PRMT8 regulate retinoic acid-dependent neuronal differentiation with implications to neuropathology.; Stem Cells, 33: 726-41 |
|
GSE47214 GSE37060 |
| Simandi, Zoltan et al. (2017) RXR heterodimers orchestrate transcriptional control of neurogenesis and cell fate specification.; Mol Cell Endocrinol, [no vol.]: [no pages] |
|
GSE101591 |
| Simchovitz, Alon et al. (2020) A lncRNA survey finds increases in neuroprotective LINC-PINT in Parkinson's disease substantia nigra.; Aging Cell, 19: e13115 |
|
GSE114517 |
| Simeoli, Raffaele et al. (2017) Exosomal cargo including microRNA regulates sensory neuron to macrophage communication after nerve trauma.; Nat Commun, 8: 1778 |
|
GSE104270 |
| Simeoni, Fabrizio et al. (2021) Enhancer recruitment of transcription repressors RUNX1 and TLE3 by mis-expressed FOXC1 blocks differentiation in acute myeloid leukemia.; Cell Rep, 36: 109725 |
|
GSE159690 |
| Simkin, Rebecca L et al. (2025) Innervation and cargo-specific axonal transport impairments in FUS-ALS mice with gain and loss of function; bioRxiv, [no vol.]: [no pages] |
|
GSE298456 GSE298457 |
| Simmini, Salvatore et al. (2014) Transformation of intestinal stem cells into gastric stem cells on loss of transcription factor Cdx2.; Nat Commun, 5: 5728 |
|
GSE62784 |
| Simmons, Katrina M et al. (2015) Gene Signatures of 1,25-Dihydroxyvitamin D3 Exposure in Normal and Transformed Mammary Cells.; J Cell Biochem, 116: 1693-711 |
|
GSE27220 |
| Simon, Christian M et al. (2017) Converging Mechanisms of p53 Activation Drive Motor Neuron Degeneration in Spinal Muscular Atrophy.; Cell Rep, 21: 3767-3780 |
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GSE81245 |
| Simonett, Shane P et al. (2021) Identification of direct transcriptional targets of NFATC2 that promote β cell proliferation.; J Clin Invest, 131: [no pages] |
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GSE158498 |
| Simoni, Matilde et al. (2024) PML restrains p53 activity and cellular senescence in clear cell renal cell carcinoma.; EMBO Mol Med, 16: 1324-1351 |
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GSE246846 |
| Simpson, Eric L et al. (2019) A Phase 2 Randomized Trial of Apremilast in Patients with Atopic Dermatitis.; J Invest Dermatol, 139: 1063-1072 |
|
GSE120899 |
| Simpson, Julie E et al. (2011) Microarray analysis of the astrocyte transcriptome in the aging brain: relationship to Alzheimer's pathology and APOE genotype.; Neurobiol Aging, 32: 1795-807 |
|
GSE29652 |
| Simpson, Julie E et al. (2016) Neuronal DNA damage response-associated dysregulation of signalling pathways and cholesterol metabolism at the earliest stages of Alzheimer-type pathology.; Neuropathol Appl Neurobiol, 42: 167-79 |
|
GSE66333 |
| Sims, A H et al. (2012) Defining the molecular response to trastuzumab, pertuzumab and combination therapy in ovarian cancer.; Br J Cancer, [no vol.]: [no pages] |
|
GSE31432 |
| Sims, Amy C et al. (2013) Release of severe acute respiratory syndrome coronavirus nuclear import block enhances host transcription in human lung cells.; J Virol, 87: 3885-902 |
|
GSE33267 |
| Sims, Emily K et al. (2013) Divergent compensatory responses to high-fat diet between C57BL6/J and C57BLKS/J inbred mouse strains.; Am J Physiol Endocrinol Metab, 305: E1495-511 |
|
GSE51055 |
| Simão, Daniel et al. (2018) Recapitulation of Human Neural Microenvironment Signatures in iPSC-Derived NPC 3D Differentiation.; Stem Cell Reports, 11: 552-564 |
|
GSE102139 |
| Simón-Carrasco, Lucía et al. (2017) Inactivation of Capicua in adult mice causes T-cell lymphoblastic lymphoma.; Genes Dev, 31: 1456-1468 |
|
GSE89952 |
| Sin, Yooksil et al. (2018) Generation of splice switching oligonucleotides targeting the Cockayne syndrome group B gene product in order to change the diseased cell state.; Biochem Biophys Res Commun, 500: 163-169 |
|
GSE111989 |
| Sincennes, Marie-Claude et al. (2021) Acetylation of PAX7 controls muscle stem cell self-renewal and differentiation potential in mice.; Nat Commun, 12: 3253 |
|
GSE167532 |
| Singec, Ilyas et al. (2016) Quantitative Analysis of Human Pluripotency and Neural Specification by In-Depth (Phospho)Proteomic Profiling.; Stem Cell Reports, 7: 527-542 |
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GSE39876 |
| Singer, Christian F et al. (2013) Response prediction to neoadjuvant chemotherapy: comparison between pre-therapeutic gene expression profiles and in vitro chemosensitivity assay.; PLoS One, 8: e66573 |
|
GSE29561 |
| Singer, E et al. (2015) Reactive oxygen species-mediated therapeutic response and resistance in glioblastoma.; Cell Death Dis, 6: e1601 |
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GSE57978 |
| Singer, Ruth A et al. (2019) The Long Noncoding RNA Paupar Modulates PAX6 Regulatory Activities to Promote Alpha Cell Development and Function.; Cell Metab, 30: 1091-1106.e8 |
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GSE121884 GSE132072 GSE122033.2 |
| Singer, Ruth A et al. (2025) Opto-CLIP reveals dynamic FMRP regulation of mRNAs upon CA1 neuronal activation.; bioRxiv, [no vol.]: [no pages] |
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GSE286381 |
| Singh, Abhishek K et al. (2025) Metabolic adaptation of regenerative hematopoiesis depends on docking-independent mitochondrial connexin 43.; Blood, 146: 2306-2321 |
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GSE305764 |
| Singh, Akash K et al. (2022) Glucose derived carbon nanosphere (CSP) conjugated TTK21, an activator of the histone acetyltransferases CBP/p300, ameliorates amyloid-beta 1-42 induced deficits in plasticity and associativity in hippocampal CA1 pyramidal neurons.; Aging Cell, 21: e13675 |
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GSE206799 |
| Singh, Akash Kumar et al. (2025) Epigenetic modulation rescues neurodevelopmental deficits in Syngap1+/-mice.; Aging Cell, 24: e14408 |
|
GSE252400 |
| Singh, Amar M et al. (2013) Cell-cycle control of developmentally regulated transcription factors accounts for heterogeneity in human pluripotent cells.; Stem Cell Reports, 1: 532-44 |
|
GSE53481 |
| Singh, Amrit et al. (2013) Gene-metabolite expression in blood can discriminate allergen-induced isolated early from dual asthmatic responses.; PLoS One, 8: e67907 |
|
GSE40240 |
| Singh, Anju et al. (2013) Transcription factor NRF2 regulates miR-1 and miR-206 to drive tumorigenesis.; J Clin Invest, 123: 2921-34 |
|
GSE38332 |
| Singh, Ankita et al. (2023) A murine model of post-acute neurological sequelae following SARS-CoV-2 variant infection.; Front Immunol, 15: 1384516 |
|
GSE260625 |
| Singh, Brijesh K et al. (2016) Hepatic FOXO1 Target Genes Are Co-regulated by Thyroid Hormone via RICTOR Protein Deacetylation and MTORC2-AKT Protein Inhibition.; J Biol Chem, 291: 198-214 |
|
GSE68803 |
| Singh, Dave et al. (2011) Induced sputum genes associated with spirometric and radiological disease severity in COPD ex-smokers.; Thorax, 66: 489-95 |
|
GSE22148 |
| Singh, Dave et al. (2014) Altered gene expression in blood and sputum in COPD frequent exacerbators in the ECLIPSE cohort.; PLoS One, 9: e107381 |
|
GSE54837 |
| Singh, Dinesh et al. (2002) Gene expression correlates of clinical prostate cancer behavior.; Cancer Cell, 1: 203-9 |
|
singh-prostate |
| Singh, G et al. (2022) Altered genome-wide hippocampal gene expression profiles following early life lead exposure and their potential for reversal by environmental enrichment.; Sci Rep, 12: 11937 |
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GSE180354 |
| Singh, Garima et al. (2022) Dose- and sex-dependent effects of phlebotomy-induced anemia on the neonatal mouse hippocampal transcriptome.; Pediatr Res, 92: 712-720 |
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GSE179877 |
| Singh, Gurdeep et al. (2022) Histone macroH2A1 is a stronger regulator of hippocampal transcription and memory than macroH2A2 in mice.; Commun Biol, 5: 482 |
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GSE147445 |
| Singh, M K et al. (2007) Gene expression changes in peripheral blood mononuclear cells from multiple sclerosis patients undergoing beta-interferon therapy.; J Neurol Sci, 258: 52-9 |
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GSE5574 |
| Singh, Mohini et al. (2018) Therapeutic Targeting of the Premetastatic Stage in Human Lung-to-Brain Metastasis.; Cancer Res, 78: 5124-5134 |
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GSE110495 |
| Singh, Neetu et al. (2018) Differential genomics and transcriptomics between tyrosine kinase inhibitor-sensitive and -resistant BCR-ABL-dependent chronic myeloid leukemia.; Oncotarget, 9: 30385-30418 |
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GSE77191 |
| Singh, Priyam et al. (2009) Global changes in processing of mRNA 3' untranslated regions characterize clinically distinct cancer subtypes.; Cancer Res, 69: 9422-30 |
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GSE15808 |
| Singh, Ram Kumar et al. (2024) Novel Anti-B-cell Maturation Antigen Alpha-Amanitin Antibody-drug Conjugate HDP-101 Shows Superior Activity to Belantamab Mafodotin and Enhanced Efficacy in Deletion 17p Myeloma Models.; Res Sq, [no vol.]: [no pages] |
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GSE148242 |
| Singh, Ravi K et al. (2014) Rbfox2-coordinated alternative splicing of Mef2d and Rock2 controls myoblast fusion during myogenesis.; Mol Cell, 55: 592-603 |
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GSE58928 |
| Singh, Ruchira et al. (2005) Microarray-based comparison of three amplification methods for nanogram amounts of total RNA.; Am J Physiol Cell Physiol, 288: C1179-89 |
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GSE1435 |
| Singh, Shivendra et al. (2022) Targeting KDM4 for treating PAX3-FOXO1-driven alveolar rhabdomyosarcoma.; Sci Transl Med, 14: eabq2096 |
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GSE158394 |
| Singh, Shivendra et al. (2023) The Oligostilbene Gnetin H Is a Novel Glycolysis Inhibitor That Regulates Thioredoxin Interacting Protein Expression and Synergizes with OXPHOS Inhibitor in Cancer Cells.; Int J Mol Sci, 24: [no pages] |
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GSE224692 |
| Singh, Shivendra et al. (2024) RBM39 degrader invigorates natural killer cells to eradicate neuroblastoma despite cancer cell plasticity.; bioRxiv, [no vol.]: [no pages] |
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GSE251918.2 |
| Singh, Siddharth et al. (2019) The cancer-associated, gain-of-function TP53 variant P152Lp53 activates multiple signaling pathways implicated in tumorigenesis.; J Biol Chem, 294: 14081-14095 |
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GSE119654 |
| Singh, Sukhvinder et al. (2020) Signature genes associated with immunological non-responsiveness to anti-retroviral therapy in HIV-1 subtype-c infection.; PLoS One, 15: e0234270 |
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GSE77939 |
| Singh, Sukhvinder et al. (2021) Integrative metabolomics and transcriptomics identifies itaconate as an adjunct therapy to treat ocular bacterial infection.; Cell Rep Med, 2: 100277 |
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GSE168928 |
| Singh, Vikas Vikram et al. (2013) Decreased pattern recognition receptor signaling, interferon-signature, and bactericidal/permeability-increasing protein gene expression in cord blood of term low birth weight human newborns.; PLoS One, 8: e62845 |
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GSE29807 |
| Singh, Vikash et al. (2023) Global role of IGF2BP1 in controlling the expression of Wnt/β-catenin-regulated genes in colorectal cancer cells.; Front Cell Dev Biol, 11: 1236356 |
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GSE237688 GSE237687 |
| Singh, Yogesh et al. (2023) Overexpression of human alpha-Synuclein leads to dysregulated microbiome/metabolites with ageing in a rat model of Parkinson disease.; Mol Neurodegener, 18: 44 |
|
GSE236012 |
| Singhal, Amit et al. (2014) Metformin as adjunct antituberculosis therapy.; Sci Transl Med, 6: 263ra159 |
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GSE51803 |
| Singhal, Hari et al. (2016) Genomic agonism and phenotypic antagonism between estrogen and progesterone receptors in breast cancer.; Sci Adv, 2: e1501924 |
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GSE80365 GSE80366 |
| Singhal, Hari et al. (2018) Progesterone receptor isoforms, agonists and antagonists differentially reprogram estrogen signaling.; Oncotarget, 9: 4282-4300 |
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GSE80619 GSE80358 GSE99626 |
| Singleton, Belinda K et al. (2008) Mutations in EKLF/KLF1 form the molecular basis of the rare blood group In(Lu) phenotype.; Blood, 112: 2081-8 |
|
GSE10584 |
| Singleton, Katherine R et al. (2017) Melanoma Therapeutic Strategies that Select against Resistance by Exploiting MYC-Driven Evolutionary Convergence.; Cell Rep, 21: 2796-2812 |
|
GSE99923 |
| Sinha Ray, Shrestha et al. (2022) Mechanisms of IRF2BPL-related disorders and identification of a potential therapeutic strategy.; Cell Rep, 41: 111751 |
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GSE189909 |
| Sinha, Birandra K et al. (2022) Gene Expression Profiling Elucidates Cellular Responses to NCX4040 in Human Ovarian Tumor Cells: Implications in the Mechanisms of Action of NCX4040.; Cancers (Basel), 15: [no pages] |
|
GSE212017 |
| Sinha, Niladri K et al. (2020) EDF1 coordinates cellular responses to ribosome collisions.; Elife, 9: [no pages] |
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GSE149565 |
| Sinha, Rohit Anthony et al. (2017) Loss of ULK1 increases RPS6KB1-NCOR1 repression of NR1H/LXR-mediated Scd1 transcription and augments lipotoxicity in hepatic cells.; Autophagy, 13: 169-186 |
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GSE74059 |
| Sinha, Surajit et al. (2025) Expression of IMPACT Curtails Metabolic Plasticity and Augments NK Cell Killing to Abrogate Metastatic Growth.; Cancer Discov, 15: 2344-2373 |
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GSE303622 GSE303691 |
| Sinkkonen, Saku T et al. (2011) Intrinsic regenerative potential of murine cochlear supporting cells.; Sci Rep, 1: 26 |
|
GSE62582 |
| Sinnaeve, Peter R et al. (2009) Gene expression patterns in peripheral blood correlate with the extent of coronary artery disease.; PLoS One, 4: e7037 |
|
GSE12288 |
| Sinton, Matthew C et al. (2023) IL-17 signalling is critical for controlling subcutaneous adipose tissue dynamics and parasite burden during chronic murine Trypanosoma brucei infection.; Nat Commun, 14: 7070 |
|
GSE210600 |
| Sintov, Elad et al. (2015) Inhibition of ZEB1 expression induces redifferentiation of adult human β cells expanded in vitro.; Sci Rep, 5: 13024 |
|
GSE69658 |
| Sipos, Ferenc et al. (2010) Peripheral blood based discrimination of ulcerative colitis and Crohn's disease from non-IBD colitis by genome-wide gene expression profiling.; Dis Markers, 30: 1-17 |
|
GSE11499 |
| Sipprell, Sophie E et al. (2025) Substance P Augments Chemokine Production by Staphylococcus aureus Infected Murine Osteoclasts.; Inflammation, [no vol.]: [no pages] |
|
GSE287095 |
| Sircar, Kanishka et al. (2015) Biphasic components of sarcomatoid clear cell renal cell carcinomas are molecularly similar to each other, but distinct from, non-sarcomatoid renal carcinomas.; J Pathol Clin Res, 1: 212-24 |
|
GSE59066 |
| Siret, C et al. (2022) Deciphering the heterogeneity of the Lyve1+perivascular macrophages in the mouse brain.; Nat Commun, 13: 7366 |
|
GSE133283 |
| Sirica, Alphonse E et al. (2009) Intrahepatic cholangiocarcinoma progression: prognostic factors and basic mechanisms.; Clin Gastroenterol Hepatol, 7: S68-78 |
|
GSE15498 |
| Sirko, Swetlana et al. (2015) Astrocyte reactivity after brain injury-: The role of galectins 1 and 3.; Glia, 63: 2340-61 |
|
GSE66370 |
| Sirozh, Oleksandra et al. (2024) Nucleolar stress caused by arginine-rich peptides triggers a ribosomopathy and accelerates aging in mice.; Mol Cell, 84: 1527-1540.e7 |
|
GSE239319 |
| Sirri, Alessandra et al. (2010) Temporal gene expression profile of the hippocampus following trace fear conditioning.; Brain Res, 1308: 14-23 |
|
GSE16158 |
| Sit, Ying Ting et al. (2023) Synergistic roles of DYRK1A and GATA1 in trisomy 21 megakaryopoiesis.; JCI Insight, 8: [no pages] |
|
GSE243702 |
| Sithara, Smithamol et al. (2023) Identification of reversible and druggable pathways to improve beta-cell function and survival in Type 2 diabetes.; Islets, 15: 2165368 |
|
GSE218540 |
| Sitrin, Jonathan et al. (2013) Regulatory T cells control NK cells in an insulitic lesion by depriving them of IL-2.; J Exp Med, 210: 1153-65 |
|
GSE39197 |
| Sivakumar, Sushama et al. (2022) TP53 promotes lineage commitment of human embryonic stem cells through ciliogenesis and sonic hedgehog signaling.; Cell Rep, 38: 110395 |
|
GSE168678 GSE168752 |
| Sivanesan, Eellan et al. (2019) Spinal cord stimulation prevents paclitaxel-induced mechanical and cold hypersensitivity and modulates spinal gene expression in rats.; Pain Rep, 4: e785 |
|
GSE132491 |
| Sjödahl, Gottfrid et al. (2012) A molecular taxonomy for urothelial carcinoma.; Clin Cancer Res, 18: 3377-86 |
|
GSE32894 |
| Sjölund, Jonas et al. (2014) Identification of Hipk2 as an essential regulator of white fat development.; Proc Natl Acad Sci U S A, 111: 7373-8 |
|
GSE46077 |
| Sjöstrand, Maria et al. (2013) Expression of the immune regulator tripartite-motif 21 is controlled by IFN regulatory factors.; J Immunol, 191: 3753-63 |
|
GSE48378 |
| Skariah, Geena et al. (2017) Mov10 suppresses retroelements and regulates neuronal development and function in the developing brain.; BMC Biol, 15: 54 |
|
GSE87862 |
| Skepner, Jill et al. (2014) Pharmacologic inhibition of ROR?t regulates Th17 signature gene expression and suppresses cutaneous inflammation in vivo.; J Immunol, 192: 2564-75 |
|
GSE53455 |
| Sırma Ekmekci, Sema et al. (2020) LEF1InducesDHRS2Gene Expression in Human Acute Leukemia Jurkat T-Cells.; Turk J Haematol, 37: 226-233 |
|
GSE129917 |
| Škandík, Martin et al. (2025) Age-associated microglial transcriptome leads to diminished immunogenicity and dysregulation of MCT4 and P2RY12/P2RY13 related functions.; Cell Death Discov, 11: 16 |
|
GSE287220 |