List of all 17,751 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Tran, Luuli N et al. (2025) Epigenetic priming of neural progenitors by Notch enhances Sonic hedgehog signaling and establishes gliogenic competence.; Genes Dev, 39: 886-906 |
|
GSE295475 |
| Tran, Nicholas M et al. (2014) Mechanistically distinct mouse models for CRX-associated retinopathy.; PLoS Genet, 10: e1004111 |
|
GSE51184 |
| Tran, Quynh T et al. (2009) Chemical genomics of cancer chemopreventive dithiolethiones.; Carcinogenesis, 30: 480-6 |
|
GSE8882 |
| Tran, Stephen S et al. (2019) Widespread RNA editing dysregulation in brains from autistic individuals.; Nat Neurosci, 22: 25-36 |
|
GSE107896 |
| Tran, Thi Thom et al. (2019) Effect of landiolol on sex-related transcriptomic changes in the myocardium during sepsis.; Intensive Care Med Exp, 7: 50 |
|
GSE125042 |
| Tranchevent, Léon-Charles et al. (2023) Systems level analysis of sex-dependent gene expression changes in Parkinson's disease.; NPJ Parkinsons Dis, 9: 8 |
|
GSE168496 |
| Trandem, Kathryn et al. (2011) Highly activated cytotoxic CD8 T cells express protective IL-10 at the peak of coronavirus-induced encephalitis.; J Immunol, 186: 3642-52 |
|
GSE25846 |
| Trapnell, Cole et al. (2013) Differential analysis of gene regulation at transcript resolution with RNA-seq.; Nat Biotechnol, 31: 46-53 |
|
GSE37703 |
| Trapnell, Cole et al. (2014) The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells.; Nat Biotechnol, 32: 381-6 |
|
GSE52529 |
| Traunmüller, Lisa et al. (2016) Control of neuronal synapse specification by a highly dedicated alternative splicing program.; Science, 352: 982-6 |
|
GSE79902 |
| Traunmüller, Lisa et al. (2023) A cell-type-specific alternative splicing regulator shapes synapse properties in a trans-synaptic manner.; Cell Rep, 42: 112173 |
|
GSE209870 |
| Trautwein, Christoph et al. (2021) Tissue metabolites in diffuse glioma and their modulations by IDH1 mutation, histology and treatment.; JCI Insight, [no vol.]: [no pages] |
|
GSE190504 |
| Travelli, Cristina et al. (2023) Extracellular nicotinamide phosphoribosyltransferase (eNAMPT) neutralization counteracts T cell immune evasion in breast cancer.; J Immunother Cancer, 11: [no pages] |
|
GSE223539 |
| Treff, Nathan R et al. (2006) Differentiation of embryonic stem cells conditionally expressing neurogenin 3.; Stem Cells, 24: 2529-37 |
|
GSE3653 |
| Treiber, Thomas et al. (2010) Early B cell factor 1 regulates B cell gene networks by activation, repression, and transcription- independent poising of chromatin.; Immunity, 32: 714-25 |
|
GSE21454 |
| Treister, N S et al. (2005) Sex-related differences in gene expression in salivary glands of BALB/c mice.; J Dent Res, 84: 160-5 |
|
GSE1503 |
| Treviño, Lisa R et al. (2009) Germline genomic variants associated with childhood acute lymphoblastic leukemia.; Nat Genet, 41: 1001-5 |
|
GSE17195 |
| Trigila, Anabella P et al. (2023) Accelerated Evolution Analysis Uncovers PKNOX2 as a Key Transcription Factor in the Mammalian Cochlea.; Mol Biol Evol, 40: [no pages] |
|
GSE171921 |
| Trilling, Mirko et al. (2013) Deciphering the modulation of gene expression by type I and II interferons combining 4sU-tagging, translational arrest and in silico promoter analysis.; Nucleic Acids Res, 41: 8107-25 |
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GSE30457 |
| Trimarchi, Jeffrey M et al. (2008) Individual retinal progenitor cells display extensive heterogeneity of gene expression.; PLoS One, 3: e1588 |
|
GSE9811 |
| Trimarchi, Thomas et al. (2014) Genome-wide mapping and characterization of Notch-regulated long noncoding RNAs in acute leukemia.; Cell, 158: 593-606 |
|
GSE57982 |
| Trimarco, Amelia et al. (2014) Prostaglandin D2 synthase/GPR44: a signaling axis in PNS myelination.; Nat Neurosci, 17: 1682-92 |
|
GSE61784 |
| Trinklein, Nathan D et al. (2004) The role of heat shock transcription factor 1 in the genome-wide regulation of the mammalian heat shock response.; Mol Biol Cell, 15: 1254-61 |
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GSE3074 |
| Triolo, Taylor M et al. (2022) Stem-Cell-Derived β-Like Cells with a Functional PTPN2 Knockout Display Increased Immunogenicity.; Cells, 11: [no pages] |
|
GSE211636 |
| Tripathi, Aarti et al. (2021) Lack of Interferon (IFN) Regulatory Factor 8 Associated with Restricted IFN-γ Response Augmented Japanese Encephalitis Virus Replication in the Mouse Brain.; J Virol, 95: e0040621 |
|
GSE154002 |
| Tripathi, Abhai K et al. (2009) Plasmodium falciparum-infected erythrocytes induce NF-kappaB regulated inflammatory pathways in human cerebral endothelium.; Blood, 114: 4243-52 |
|
GSE9861 |
| Tripathi, Ajai et al. (2019) Oligodendrocyte Intrinsic miR-27a Controls Myelination and Remyelination.; Cell Rep, 29: 904-919.e9 |
|
GSE135308 |
| Tripathi, Anusri et al. (2008) Gene expression abnormalities in histologically normal breast epithelium of breast cancer patients.; Int J Cancer, 122: 1557-66 |
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GSE9574 |
| Tripathi, Subhash K et al. (2017) Genome-wide Analysis of STAT3-Mediated Transcription during Early Human Th17 Cell Differentiation.; Cell Rep, 19: 1888-1901 |
|
GSE67185 |
| Tripathy, Sudeshna et al. (2024) Relaxin Modulates the Genomic Actions and Biological Effects of Estrogen in the Myometrium.; bioRxiv, [no vol.]: [no pages] |
|
GSE275894 |
| Trisno, Stephen L et al. (2018) Esophageal Organoids from Human Pluripotent Stem Cells Delineate Sox2 Functions during Esophageal Specification.; Cell Stem Cell, 23: 501-515.e7 |
|
GSE112886 |
| Triulzi, Tiziana et al. (2015) Whole-transcriptome analysis links trastuzumab sensitivity of breast tumors to both HER2 dependence and immune cell infiltration.; Oncotarget, 6: 28173-82 |
|
GSE55348 |
| Trivedi, Priyanka et al. (2017) Targeting Phospholipase D4 Attenuates Kidney Fibrosis.; J Am Soc Nephrol, 28: 3579-3589 |
|
GSE87212 |
| Trivedi, Vrunda et al. (2024) mRNA-based precision targeting of neoantigens and tumor-associated antigens in malignant brain tumors.; Genome Med, 16: 17 |
|
GSE251798 GSE251799 |
| Trizzino, Marco et al. (2018) The Tumor Suppressor ARID1A Controls Global Transcription via Pausing of RNA Polymerase II.; Cell Rep, 23: 3933-3945 |
|
GSE104545 |
| Trollet, Capucine et al. (2010) Molecular and phenotypic characterization of a mouse model of oculopharyngeal muscular dystrophy reveals severe muscular atrophy restricted to fast glycolytic fibres.; Hum Mol Genet, 19: 2191-207 |
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GSE26604 |
| Tropea, Daniela et al. (2006) Gene expression changes and molecular pathways mediating activity-dependent plasticity in visual cortex.; Nat Neurosci, 9: 660-8 |
|
GSE4537 |
| Trowbridge, Jennifer J et al. (2009) DNA methyltransferase 1 is essential for and uniquely regulates hematopoietic stem and progenitor cells.; Cell Stem Cell, 5: 442-9 |
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GSE15840 |
| Trudler, Dorit et al. (2021) Soluble ?-synuclein-antibody complexes activate the NLRP3 inflammasome in hiPSC-derived microglia.; Proc Natl Acad Sci U S A, 118: [no pages] |
|
GSE169065 |
| Truitt, Morgan L et al. (2015) Differential Requirements for eIF4E Dose in Normal Development and Cancer.; Cell, 162: 59-71 |
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GSE68238 |
| Trujillo, Cleber A et al. (2021) Pharmacological reversal of synaptic and network pathology in human MECP2-KO neurons and cortical organoids.; EMBO Mol Med, 13: e12523 |
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GSE160146 |
| Truong, Trang Tt et al. (2022) Co-Expression Networks Unveiled Long Non-Coding RNAs as Molecular Targets of Drugs Used to Treat Bipolar Disorder.; Front Pharmacol, 13: 873271 |
|
GSE197966 |
| Tryndyak, Volodymyr et al. (2012) Interstrain differences in the severity of liver injury induced by a choline- and folate-deficient diet in mice are associated with dysregulation of genes involved in lipid metabolism.; FASEB J, 26: 4592-602 |
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GSE62362 |
| Tröscher, Anna R et al. (2019) Microglial nodules provide the environment for pathogenic T cells in human encephalitis.; Acta Neuropathol, 137: 619-635 |
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GSE121010 |
| Tröscher, Anna R et al. (2023) Temporal lobe epilepsy with GAD antibodies: neurons killed by T cells not by complement membrane attack complex.; Brain, 146: 1436-1452 |
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GSE209793 |
| Tsai, Andy P et al. (2023) Genetic variants of phospholipase C-γ2 alter the phenotype and function of microglia and confer differential risk for Alzheimer's disease.; Immunity, 56: 2121-2136.e6 |
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GSE237493 |
| Tsai, Chen-An et al. (2013) Identifying gene set association enrichment using the coefficient of intrinsic dependence.; PLoS One, 8: e58851 |
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GSE9309 GSE17040 |
| Tsai, Feng-Chun et al. (2016) Differential left-to-right atria gene expression ratio in human sinus rhythm and atrial fibrillation: Implications for arrhythmogenesis and thrombogenesis.; Int J Cardiol, 222: 104-12 |
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GSE79768 |
| Tsai, Harrison K et al. (2017) Gene expression signatures of neuroendocrine prostate cancer and primary small cell prostatic carcinoma.; BMC Cancer, 17: 759 |
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GSE104786 |
| Tsai, Jui-Feng et al. (2023) Neurotoxicity of mycotoxin citrinin: Novel evidence in developing zebrafish and underlying mechanisms in human neuron cells.; Food Chem Toxicol, 171: 113543 |
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GSE211723 |
| Tsai, Pai-Chi et al. (2014) MiR-153 targets the nuclear factor-1 family and protects against teratogenic effects of ethanol exposure in fetal neural stem cells.; Biol Open, 3: 741-58 |
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GSE49684 |
| Tsai, S et al. (2011) Transcriptional profiling of human placentas from pregnancies complicated by preeclampsia reveals disregulation of sialic acid acetylesterase and immune signalling pathways.; Placenta, 32: 175-82 |
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GSE25906 |
| Tsai, Zong-Yun et al. (2010) A feeder-free culture using autogeneic conditioned medium for undifferentiated growth of human embryonic stem cells: comparative expression profiles of mRNAs, microRNAs and proteins among different feeders and conditioned media.; BMC Cell Biol, 11: 76 |
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GSE19902 |
| Tsai-Morris, Chon-Hwa et al. (2012) Role of gonadotropin regulated testicular RNA helicase (GRTH/Ddx25) on polysomal associated mRNAs in mouse testis.; PLoS One, 7: e32470 |
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GSE33860 |
| Tsalik, Ephraim L et al. (2014) An integrated transcriptome and expressed variant analysis of sepsis survival and death.; Genome Med, 6: 111 |
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GSE63042 |
| Tsan, Linda et al. (2022) Early-life low-calorie sweetener consumption disrupts glucose regulation, sugar-motivated behavior, and memory function in rats.; JCI Insight, 7: [no pages] |
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GSE212589 |
| Tsang, John S et al. (2014) Global analyses of human immune variation reveal baseline predictors of postvaccination responses.; Cell, 157: 499-513 |
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GSE47353 |
| Tsang, Wan-Hong et al. (2013) LIF-dependent primitive neural stem cells derived from mouse ES cells represent a reversible stage of neural commitment.; Stem Cell Res, 11: 1091-102 |
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GSE44608 |
| Tsaytler, Pavel et al. (2023) BMP4 triggers regulatory circuits specifying the cardiac mesoderm lineage.; Development, 150: [no pages] |
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GSE168580 |
| Tse, Christin et al. (2008) ABT-263: a potent and orally bioavailable Bcl-2 family inhibitor.; Cancer Res, 68: 3421-8 |
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GSE10841 |
| Tseng, B S et al. (2002) Regenerated mdx mouse skeletal muscle shows differential mRNA expression.; J Appl Physiol (1985), 93: 537-45 |
|
GSE466 |
| Tseng, Kuan-Yin et al. (2023) Augmenting hematoma-scavenging capacity of innate immune cells by CDNF reduces brain injury and promotes functional recovery after intracerebral hemorrhage.; Cell Death Dis, 14: 128 |
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GSE216547 |
| Tseng, Yu-Chou et al. (2015) Preclinical Investigation of the Novel Histone Deacetylase Inhibitor AR-42 in the Treatment of Cancer-Induced Cachexia.; J Natl Cancer Inst, 107: djv274 |
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GSE65936 |
| Tseng, Yu-Hua et al. (2005) Prediction of preadipocyte differentiation by gene expression reveals role of insulin receptor substrates and necdin.; Nat Cell Biol, 7: 601-11 |
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GSE2556 |
| Tsimakouridze, Elena V et al. (2012) Chronomics of pressure overload-induced cardiac hypertrophy in mice reveals altered day/night gene expression and biomarkers of heart disease.; Chronobiol Int, 29: 810-21 |
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GSE36407 |
| Tsingas, Maria et al. (2020) Sox9 deletion causes severe intervertebral disc degeneration characterized by apoptosis, matrix remodeling, and compartment-specific transcriptomic changes.; Matrix Biol, 94: 110-133 |
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GSE150850 |
| Tsitkanou, Stavroula et al. (2023) Biological sex divergence in transcriptomic profiles during the onset of hindlimb unloading-induced atrophy.; Am J Physiol Cell Physiol, 325: C1276-C1293 |
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GSE240814 |
| Tsitsikov, Erdyni N et al. (2023) Specific gene expression signatures of low grade meningiomas.; Front Oncol, 13: 1126550 |
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GSE221429 |
| Tsitsikov, Erdyni N et al. (2024) Spontaneous mutation in 2310061I04Rik results in reduced expression of mitochondrial genes and impaired brain myelination.; PLoS One, 19: e0290487 |
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GSE275375 GSE275376 GSE275372 |
| Tsitsiou, Eleni et al. (2012) Transcriptome analysis shows activation of circulating CD8+ T cells in patients with severe asthma.; J Allergy Clin Immunol, 129: 95-103 |
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GSE31773 |
| Tsitsipatis, Dimitrios et al. (2022) Transcriptomic analysis of human ALS skeletal muscle reveals a disease-specific pattern of dysregulated circRNAs.; Aging (Albany NY), 14: 9832-9859 |
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GSE215364 |
| Tso, Cho-Lea et al. (2006) Primary glioblastomas express mesenchymal stem-like properties.; Mol Cancer Res, 4: 607-19 |
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GSE5107 |
| Tso, Michael K et al. (2021) Gene expression profiling of brain endothelial cells after experimental subarachnoid haemorrhage.; Sci Rep, 11: 7818 |
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GSE155137 |
| Tsou, Amy M et al. (2022) Neuropeptide regulation of non-redundant ILC2 responses at barrier surfaces.; Nature, 611: 787-793 |
|
GSE211735 |
| Tsubota, Akihito et al. (2014) Involvement of MAP3K8 and miR-17-5p in poor virologic response to interferon-based combination therapy for chronic hepatitis C.; PLoS One, 9: e97078 |
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GSE42697 |
| Tsubota, Shoma et al. (2017) PRC2-Mediated Transcriptomic Alterations at the Embryonic Stage Govern Tumorigenesis and Clinical Outcome in MYCN-Driven Neuroblastoma.; Cancer Res, 77: 5259-5271 |
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GSE87781 GSE87782 GSE87783 |
| Tsuchiya, Masato et al. (2010) Gene expression in nontumoral liver tissue and recurrence-free survival in hepatitis C virus-positive hepatocellular carcinoma.; Mol Cancer, 9: 74 |
|
GSE17856 |
| Tsuchiya, Tomoshi et al. (2004) Additive regulation of hepatic gene expression by dwarfism and caloric restriction.; Physiol Genomics, 17: 307-15 |
|
GSE1093 |
| Tsuge, Mitsuru et al. (2014) Gene expression analysis in children with complex seizures due to influenza A(H1N1)pdm09 or rotavirus gastroenteritis.; J Neurovirol, 20: 73-84 |
|
GSE50628 |
| Tsuji, S et al. (2012) Potential responders to FOLFOX therapy for colorectal cancer by Random Forests analysis.; Br J Cancer, 106: 126-32 |
|
GSE28702 |
| Tsuji-Tamura, Kiyomi et al. (2016) Inhibition of the PI3K-Akt and mTORC1 signaling pathways promotes the elongation of vascular endothelial cells.; J Cell Sci, 129: 1165-78 |
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GSE76366 |
| Tsukada, Yu-ichi et al. (2010) KDM7 is a dual demethylase for histone H3 Lys 9 and Lys 27 and functions in brain development.; Genes Dev, 24: 432-7 |
|
GSE17494 |
| Tsukamoto, Kosuke et al. (2013) Identification of apolipoprotein D as a cardioprotective gene using a mouse model of lethal atherosclerotic coronary artery disease.; Proc Natl Acad Sci U S A, 110: 17023-8 |
|
GSE49937 |
| Tsukamoto, Shunsuke et al. (2011) Clinical significance of osteoprotegerin expression in human colorectal cancer.; Clin Cancer Res, 17: 2444-50 |
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GSE21510 |
| Tsuruda, Mariko et al. (2024) Bone morphogenetic protein 4 induces hematopoietic stem cell development from murine hemogenic endothelial cells in culture.; Stem Cell Reports, 19: 1677-1689 |
|
GSE271522 |
| Tsvetkov, Peter et al. (2019) Mitochondrial metabolism promotes adaptation to proteotoxic stress.; Nat Chem Biol, 15: 681-689 |
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GSE123637 GSE123638 |
| Tsyporin, Jeremiah et al. (2021) Transcriptional repression by FEZF2 restricts alternative identities of cortical projection neurons.; Cell Rep, 35: 109269 |
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GSE160202 GSE149253 |
| Tu, Chengyi et al. (2022) A transcriptomic atlas of drug-induced endothelial dysfunction in human endothelial cells.; J Mol Cell Cardiol, 173: 115-117 |
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GSE217898 |
| Tu, Shichun et al. (2017) NitroSynapsin therapy for a mouse MEF2C haploinsufficiency model of human autism.; Nat Commun, 8: 1488 |
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GSE103298 |
| Tu, Xiaofan et al. (2023) Airway and parenchyma transcriptomics in a house dust mite model of experimental asthma.; Respir Res, 24: 32 |
|
GSE199853 |
| Tu, Yiji et al. (2020) Gene Expression Profiling of the Sciatic Nerve in Streptozotocin-Induced Diabetic Rats with Peripheral Neuropathy.; J Diabetes Res, 2020: 5283284 |
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GSE147732 |
| Tu, Zhaowei et al. (2022) Autism-associated chromatin remodeler CHD8 regulates erythroblast cytokinesis and fine-tunes the balance of Rho GTPase signaling.; Cell Rep, 40: 111072 |
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GSE189853 |