List of all 21,870 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Shiraki, Nobuhiko et al. (2022) PAX6-positive microglia evolve locally in hiPSC-derived ocular organoids.; Stem Cell Reports, 17: 221-230 |
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GSE190428 |
| Shirasaki, Ryosuke et al. (2021) Functional Genomics Identify Distinct and Overlapping Genes Mediating Resistance to Different Classes of Heterobifunctional Degraders of Oncoproteins.; Cell Rep, 34: 108532 |
|
GSE162205 |
| Shireman, Jack M et al. (2024) Genomic analysis of human brain metastases treated with stereotactic radiosurgery reveals unique signature based on treatment failure.; iScience, 27: 109601 |
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GSE256463 |
| Shires, Sarah E et al. (2020) Nuclear Parkin Activates the ERRα Transcriptional Program and Drives Widespread Changes in Gene Expression Following Hypoxia.; Sci Rep, 10: 8499 |
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GSE139989 |
| Shockley, Keith R et al. (2009) PPARgamma2 nuclear receptor controls multiple regulatory pathways of osteoblast differentiation from marrow mesenchymal stem cells.; J Cell Biochem, 106: 232-46 |
|
GSE10192 |
| Shoda, Asuka et al. (2023) Developmental stage-specific exposure and neurotoxicity evaluation of low-dose clothianidin during neuronal circuit formation.; J Vet Med Sci, 85: 486-496 |
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GSE218520 |
| Shoda, Jumpei et al. (2022) Semaphorin 3G exacerbates joint inflammation through the accumulation and proliferation of macrophages in the synovium.; Arthritis Res Ther, 24: 134 |
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GSE176440 |
| Shojo, H et al. (2010) Genetic and histologic evidence implicates role of inflammation in traumatic brain injury-induced apoptosis in the rat cerebral cortex following moderate fluid percussion injury.; Neuroscience, 171: 1273-82 |
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GSE24047 |
| Sholder, Gabriel et al. (2020) 3'Pool-seq: an optimized cost-efficient and scalable method of whole-transcriptome gene expression profiling.; BMC Genomics, 21: 64 |
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GSE125570 GSE125568 GSE125569 |
| Sholler, Dennis J et al. (2020) Inherent Motor Impulsivity Associates with Specific Gene Targets in the Rat Medial Prefrontal Cortex.; Neuroscience, 435: 161-173 |
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GSE141073 |
| Shon, Jong Cheol et al. (2020) Plasma Lipidomics Reveals Insights into Anti-Obesity Effect ofChrysanthemum morifoliumRamat Leaves and Its Constituent Luteolin in High-Fat Diet-Induced Dyslipidemic Mice.; Nutrients, 12: [no pages] |
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GSE124777 |
| Shonibare, Zainab et al. (2022) Reciprocal SOX2 regulation by SMAD1-SMAD3 is critical for anoikis resistance and metastasis in cancer.; Cell Rep, 40: 111066 |
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GSE185932 |
| Shoob, Shiri et al. (2023) Deep brain stimulation of thalamic nucleus reuniens promotes neuronal and cognitive resilience in an Alzheimer's disease mouse model.; Nat Commun, 14: 7002 |
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GSE245201 |
| Shore, Amy N et al. (2012) Pregnancy-induced noncoding RNA (PINC) associates with polycomb repressive complex 2 and regulates mammary epithelial differentiation.; PLoS Genet, 8: e1002840 |
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GSE38052 |
| Shornick, Laurie P et al. (2008) Airway epithelial versus immune cell Stat1 function for innate defense against respiratory viral infection.; J Immunol, 180: 3319-28 |
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GSE10211 |
| Shorthouse, David et al. (2023) KCNQ potassium channels modulate Wnt activity in gastro-oesophageal adenocarcinomas.; Life Sci Alliance, 6: [no pages] |
|
GSE242782 |
| Shortt, Jake et al. (2014) The drug vehicle and solvent N-methylpyrrolidone is an immunomodulator and antimyeloma compound.; Cell Rep, 7: 1009-19 |
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GSE56623 |
| Shoshani-Haye, Keren et al. (2025) Prenatal stress induces transient developmental alterations in distinct GABAergic populations and leads to long-lasting behavioral abnormalities.; Neurobiol Stress, 38: 100749 |
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GSE296365 |
| Shostak, Kateryna et al. (2026) The lipid transfer protein STARD7 controls intestinal tumor development in a context-dependent manner.; EMBO Mol Med, 18: 1771-1811 |
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GSE247166 |
| Shou, Jia-Wen et al. (2022) Novel mechanistic insight on the neuroprotective effect of berberine: The role of PPARδ for antioxidant action.; Free Radic Biol Med, 181: 62-71 |
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GSE164469 |
| Showe, Michael K et al. (2009) Gene expression profiles in peripheral blood mononuclear cells can distinguish patients with non-small cell lung cancer from patients with nonmalignant lung disease.; Cancer Res, 69: 9202-10 |
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GSE13255 |
| Shpargel, Karl B et al. (2020) The KMT2D Kabuki syndrome histone methylase controls neural crest cell differentiation and facial morphology.; Development, 147: [no pages] |
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GSE149688 |
| Shpokayte, Monika et al. (2022) Hippocampal cells segregate positive and negative engrams.; Commun Biol, 5: 1009 |
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GSE198731 |
| Shpyleva, Svitlana et al. (2014) Cerebellar oxidative DNA damage and altered DNA methylation in the BTBR T+tf/J mouse model of autism and similarities with human post mortem cerebellum.; PLoS One, 9: e113712 |
|
GSE62594 |
| Shree, Bakhya et al. (2020) Transforming Growth Factor-Beta-Regulated LncRNA-MUF Promotes Invasion by Modulating the miR-34a Snail1 Axis in Glioblastoma Multiforme.; Front Oncol, 11: 788755 |
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GSE183211 |
| Shreeve, Norman et al. (2021) The CD94/NKG2A inhibitory receptor educates uterine NK cells to optimize pregnancy outcomes in humans and mice.; Immunity, 54: 1231-1244.e4 |
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GSE173478 |
| Shrestha, Dewan et al. (2022) Genomics and epigenetics guided identification of tissue-specific genomic safe harbors.; Genome Biol, 23: 199 |
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GSE183935 |
| Shrestha, Padmina et al. (2023) Chd5 Regulates the Transcription Factor Six3 to Promote Neuronal Differentiation.; Stem Cells, 41: 242-251 |
|
GSE208168 |
| Shrestha, Prerana et al. (2015) Layer 2/3 pyramidal cells in the medial prefrontal cortex moderate stress induced depressive behaviors.; Elife, 4: [no pages] |
|
GSE69340 |
| Shrestha, Swikriti et al. (2025) Modeling diabetic alpha cell dysfunction using stem cell-derived alpha cells.; Stem Cell Reports, 20: 102504 |
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GSE293266 |
| Shtilbans, Alexander et al. (2011) Differential gene expression in patients with amyotrophic lateral sclerosis.; Amyotroph Lateral Scler, 12: 250-6 |
|
GSE26276 |
| Shu, Feng et al. (2024) m6A Modification Promotes EMT and Metastasis of Castration-Resistant Prostate Cancer by Upregulating NFIB.; Cancer Res, 84: 1947-1962 |
|
GSE260921 |
| Shu, Huan et al. (2020) FMRP links optimal codons to mRNA stability in neurons.; Proc Natl Acad Sci U S A, 117: 30400-30411 |
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GSE140642 |
| Shu, Jian et al. (2013) Induction of pluripotency in mouse somatic cells with lineage specifiers.; Cell, 153: 963-75 |
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GSE47441.3 GSE47441.2 |
| Shu, Le et al. (2019) Prenatal Bisphenol A Exposure in Mice Induces Multitissue Multiomics Disruptions Linking to Cardiometabolic Disorders.; Endocrinology, 160: 409-429 |
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GSE121606 |
| Shu, Linyi et al. (2020) Resveratrol improves high-fat diet-induced insulin resistance in mice by downregulating the lncRNA NONMMUT008655.2.; Am J Transl Res, 12: 1-18 |
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GSE137840 |
| Shu, Shaokun et al. (2016) Response and resistance to BET bromodomain inhibitors in triple-negative breast cancer.; Nature, 529: 413-417 |
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GSE63582 |
| Shuai, Yi et al. (2011) Global gene expression profiles of MT knockout and wild-type mice in the condition of doxorubicin-induced cardiomyopathy.; Toxicol Lett, 200: 77-87 |
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GSE23598 |
| Shubayev, Veronica I et al. (2022) A human coronavirus OC43-derived polypeptide causes neuropathic pain.; EMBO Rep, 23: e54069 |
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GSE182706 |
| Shue, Yan Ting et al. (2022) A conserved YAP/Notch/REST network controls the neuroendocrine cell fate in the lungs.; Nat Commun, 13: 2690 |
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GSE185413 GSE171914 GSE171915 |
| Shukla, Arti et al. (2009) Alterations in gene expression in human mesothelial cells correlate with mineral pathogenicity.; Am J Respir Cell Mol Biol, 41: 114-23 |
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GSE14034 |
| Shukla, Rammohan et al. (2019) The Relative Contributions of Cell-Dependent Cortical Microcircuit Aging to Cognition and Anxiety.; Biol Psychiatry, 85: 257-267 |
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GSE119183 |
| Shukla, Sanjeev et al. (2011) CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing.; Nature, 479: 74-9 |
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GSE31486 |
| Shum, Andrew et al. (2023) Octopamine metabolically reprograms astrocytes to confer neuroprotection against α-synuclein.; Proc Natl Acad Sci U S A, 120: e2217396120 |
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GSE213875 |
| Shurin, Galina V et al. (2019) Melanoma-Induced Reprogramming of Schwann Cell Signaling Aids Tumor Growth.; Cancer Res, 79: 2736-2747 |
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GSE126040 |
| Shuster, Diana L et al. (2013) Gestational age-dependent changes in gene expression of metabolic enzymes and transporters in pregnant mice.; Drug Metab Dispos, 41: 332-42 |
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GSE41438 |
| Shutova, Maria V et al. (2016) An integrative analysis of reprogramming in human isogenic system identified a clone selection criterion.; Cell Cycle, 15: 986-97 |
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GSE70735 |
| Si, Han et al. (2009) Human and murine kidneys show gender- and species-specific gene expression differences in response to injury.; PLoS One, 4: e4802 |
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GSE12682 GSE12683 |
| Si, Wei-Yue et al. (2024) Therapeutic potential of microglial SMEK1 in regulating H3K9 lactylation in cerebral ischemia-reperfusion.; Commun Biol, 7: 1701 |
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GSE283233 |
| Si, Youwen et al. (2023) Age- and Genotype-Dependent Effects of Chronic Nicotine on Presenilin1/2 Double Knockout Mice: From Behavior to Molecular Pathways.; Curr Alzheimer Res, 21: 817-832 |
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GSE211983 |
| Si, Youwen et al. (2023) Circadian rhythm sleep disorders and time-of-day-dependent memory deficiency in Presenilin1/2 conditional knockout mice with long noncoding RNA expression profiling changes.; Sleep Med, 103: 146-158 |
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GSE211860 |
| Sia, Daniela et al. (2013) Integrative molecular analysis of intrahepatic cholangiocarcinoma reveals 2 classes that have different outcomes.; Gastroenterology, 144: 829-40 |
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GSE33327 |
| Sia, Daniela et al. (2015) Massive parallel sequencing uncovers actionable FGFR2-PPHLN1 fusion and ARAF mutations in intrahepatic cholangiocarcinoma.; Nat Commun, 6: 6087 |
|
GSE63420 |
| Siano, Giacomo et al. (2023) Tau mediates the reshaping of the transcriptional landscape toward intermediate Alzheimer's disease stages.; Front Cell Dev Biol, 12: 1459573 |
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GSE239956 |
| Sibley, Lydia A et al. (2021) Differential DNA methylation and transcriptional signatures characterize impairment of muscle stem cells in pediatric human muscle contractures after brain injury.; FASEB J, 35: e21928 |
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GSE181376 |
| Sica, Valentina et al. (2026) The Liver Clock Tunes Transcriptional Rhythms in Skeletal Muscle to Regulate Mitochondrial Function.; J Biol Rhythms, 41: 278-291 |
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GSE308276 GSE308278 |
| Sichlinger, Laura et al. (2026) Schizophrenia risk gene ZNF804A controls ribosome localization and synaptogenesis in developing human neurons.; Sci Adv, 12: eaea0755 |
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GSE254523 |
| Sidarovich, Viktoryia et al. (2015) Translational downregulation of HSP90 expression by iron chelators in neuroblastoma cells.; Mol Pharmacol, 87: 513-24 |
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GSE60675 |
| Siddens, Lisbeth K et al. (2012) Polycyclic aromatic hydrocarbons as skin carcinogens: comparison of benzo[a]pyrene, dibenzo[def,p]chrysene and three environmental mixtures in the FVB/N mouse.; Toxicol Appl Pharmacol, 264: 377-86 |
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GSE39455 |
| Siddiqui, Noah et al. (2022) Proteoglycans and glycosaminoglycans in central nervous system injury.; Am J Physiol Cell Physiol, 323: C46-C55 |
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GSE242025 |
| Siddle, Katherine J et al. (2014) A genomic portrait of the genetic architecture and regulatory impact of microRNA expression in response to infection.; Genome Res, 24: 850-9 |
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GSE53143 |
| Sideris-Lampretsas, George et al. (2023) Galectin-3 activates spinal microglia to induce inflammatory nociception in wild type but not in mice modelling Alzheimer's disease.; Nat Commun, 14: 3579 |
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GSE213157 |
| Sideromenos, Spyros et al. (2022) The metabolic regulator USF-1 is involved in the control of affective behaviour in mice.; Transl Psychiatry, 12: 497 |
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GSE204675 |
| Sidhaye, Jaydeep et al. (2023) Integrated transcriptome and proteome analysis reveals posttranscriptional regulation of ribosomal genes in human brain organoids.; Elife, 12: [no pages] |
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GSE214654 |
| Sidrauski, Carmela et al. (2015) The small molecule ISRIB reverses the effects of eIF2? phosphorylation on translation and stress granule assembly.; Elife, 4: [no pages] |
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GSE65778 |
| Siebert, Justin R et al. (2010) Intrinsic response of thoracic propriospinal neurons to axotomy.; BMC Neurosci, 11: 69 |
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GSE20907 |
| Siegers, Jurre Y et al. (2020) A High-Fat Diet Increases Influenza A Virus-Associated Cardiovascular Damage.; J Infect Dis, 222: 820-831 |
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GSE134685 |
| Siegert, Sandra et al. (2012) Transcriptional code and disease map for adult retinal cell types.; Nat Neurosci, 15: 487-95, S1-2 |
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GSE33076 GSE33085 |
| Siepka, Sandra M et al. (2007) Circadian mutant Overtime reveals F-box protein FBXL3 regulation of cryptochrome and period gene expression.; Cell, 129: 1011-23 |
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GSE3746 GSE3748 |
| Sierksma, Annerieke et al. (2020) Novel Alzheimer risk genes determine the microglia response to amyloid-? but not to TAU pathology.; EMBO Mol Med, 12: e10606 |
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GSE110741 |
| Sierra, Cesar et al. (2024) The lncRNA Snhg11, a new candidate contributing to neurogenesis, plasticity, and memory deficits in Down syndrome.; Mol Psychiatry, 29: 2117-2134 |
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GSE212258 |
| Sigmarsdottir, Thora Bjorg et al. (2021) Metabolic and Transcriptional Changes across Osteogenic Differentiation of Mesenchymal Stromal Cells.; Bioengineering (Basel), 8: [no pages] |
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GSE191136 |
| Sikk, Katrin et al. (2011) Peripheral blood RNA expression profiling in illicit methcathinone users reveals effect on immune system.; Front Genet, 2: 42 |
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GSE28686 |
| Sikora, Kristine M. et al. (2017) Differential gene expression in populations of sympathetic neurons purified from a neuropeptide Y reporter mouse; bioRxiv, [no vol.]: [no pages] |
|
GSE81075 |
| Silagi, Elizabeth S et al. (2018) Bicarbonate Recycling by HIF-1-Dependent Carbonic Anhydrase Isoforms 9 and 12 Is Critical in Maintaining Intracellular pH and Viability of Nucleus Pulposus Cells.; J Bone Miner Res, 33: 338-355 |
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GSE42611 |
| Silberman, Dafne M et al. (2014) SIRT6 is required for normal retinal function.; PLoS One, 9: e98831 |
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GSE56563 |
| Silbiger, Vivian N et al. (2013) Novel genes detected by transcriptional profiling from whole-blood cells in patients with early onset of acute coronary syndrome.; Clin Chim Acta, 421: 184-90 |
|
GSE29532 |
| Silk, Ryan P et al. (2024) Mapping the daily rhythmic transcriptome in the diabetic retina.; Vision Res, 214: 108339 |
|
GSE233440 |
| Silva, Ana R et al. (2026) MEX3A modulates PPARγ pathway activity and colorectal cancer growth.; Cell Mol Gastroenterol Hepatol, [no vol.]: 101771 |
|
GSE312175 |
| Silva, Carla G et al. (2018) Cell-Intrinsic Control of Interneuron Migration Drives Cortical Morphogenesis.; Cell, 172: 1063-1078.e19 |
|
GSE104090 |
| Silva, Constanza P et al. (2018) The influence of adolescent nicotine exposure on ethanol intake and brain gene expression.; PLoS One, 13: e0198935 |
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GSE115188 |
| Silva, Eliezer et al. (2007) HMGB1 and LPS induce distinct patterns of gene expression and activation in neutrophils from patients with sepsis-induced acute lung injury.; Intensive Care Med, 33: 1829-39 |
|
GSE3037 |
| Silva, Fernando P G et al. (2009) Gene expression profiling of minimally differentiated acute myeloid leukemia: M0 is a distinct entity subdivided by RUNX1 mutation status.; Blood, 114: 3001-7 |
|
GSE17061 |
| Silva, Mariline M et al. (2019) MicroRNA-186-5p controls GluA2 surface expression and synaptic scaling in hippocampal neurons.; Proc Natl Acad Sci U S A, 116: 5727-5736 |
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GSE111384 |
| Silva-Vargas, Violeta et al. (2016) Age-Dependent Niche Signals from the Choroid Plexus Regulate Adult Neural Stem Cells.; Cell Stem Cell, 19: 643-652 |
|
GSE82308 |
| Silver, Daniel P et al. (2010) Efficacy of neoadjuvant Cisplatin in triple-negative breast cancer.; J Clin Oncol, 28: 1145-53 |
|
GSE18864 |
| Silver, Debra L et al. (2010) The exon junction complex component Magoh controls brain size by regulating neural stem cell division.; Nat Neurosci, 13: 551-8 |
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GSE19168 |
| Silverman, Ian M et al. (2015) Transcriptome-wide ribonuclease-mediated protein footprinting to identify RNA-protein interaction sites.; Methods, 72: 76-85 |
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GSE57881 |
| Sim, Fraser J et al. (2006) Complementary patterns of gene expression by human oligodendrocyte progenitors and their environment predict determinants of progenitor maintenance and differentiation.; Ann Neurol, 59: 763-79 |
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GSE26535 |
| Sim, Fraser J et al. (2009) Fate determination of adult human glial progenitor cells.; Neuron Glia Biol, 5: 45-55 |
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GSE36634 |
| Sim, Fraser J et al. (2011) CD140a identifies a population of highly myelinogenic, migration-competent and efficiently engrafting human oligodendrocyte progenitor cells.; Nat Biotechnol, 29: 934-41 |
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GSE29368 |