List of all 17,751 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Todd, Brittany P et al. (2021) Traumatic brain injury results in unique microglial and astrocyte transcriptomes enriched for type I interferon response.; J Neuroinflammation, 18: 151 |
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GSE167459 |
| Todoerti, Katia et al. (2013) Transcriptional characterization of a prospective series of primary plasma cell leukemia revealed signatures associated with tumor progression and poorer outcome.; Clin Cancer Res, [no vol.]: [no pages] |
|
GSE39925 |
| Todorov, Petar V et al. (2024) An RNA-seq atlas of mouse brain areas during fasting and diet-induced obesity.; Sci Data, 11: 44 |
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GSE236077 |
| Todorova, Valentina K et al. (2012) Transcriptome profiling of peripheral blood cells identifies potential biomarkers for doxorubicin cardiotoxicity in a rat model.; PLoS One, 7: e48398 |
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GSE37260 |
| Todt, Daniel et al. (2020) Robust hepatitis E virus infection and transcriptional response in human hepatocytes.; Proc Natl Acad Sci U S A, 117: 1731-1741 |
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GSE135619 |
| Toedter, Gary et al. (2011) Gene expression profiling and response signatures associated with differential responses to infliximab treatment in ulcerative colitis.; Am J Gastroenterol, 106: 1272-80 |
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GSE23597 |
| Tognini, Paola et al. (2020) Reshaping circadian metabolism in the suprachiasmatic nucleus and prefrontal cortex by nutritional challenge.; Proc Natl Acad Sci U S A, 117: 29904-29913 |
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GSE157077 |
| Tokairin, Kikutaro et al. (2020) Vascular Smooth Muscle Cell Derived from IPS Cell of Moyamoya Disease - Comparative Characterization with Endothelial Cell Transcriptome.; J Stroke Cerebrovasc Dis, 29: 105305 |
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GSE131293 |
| Toker, Aras et al. (2013) Active demethylation of the Foxp3 locus leads to the generation of stable regulatory T cells within the thymus.; J Immunol, 190: 3180-8 |
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GSE42021 |
| Tokizane, Kyohei et al. (2024) DMHPpp1r17neurons regulate aging and lifespan in mice through hypothalamic-adipose inter-tissue communication.; Cell Metab, 36: 377-392.e11 |
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GSE224509 |
| Tolfvenstam, Thomas et al. (2011) Characterization of early host responses in adults with dengue disease.; BMC Infect Dis, 11: 209 |
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GSE28405 |
| Toll, Agustí et al. (2016) MiR-204 silencing in intraepithelial to invasive cutaneous squamous cell carcinoma progression.; Mol Cancer, 15: 53 |
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GSE71953 |
| Tollis, Paolo et al. (2023) The long noncoding RNA nHOTAIRM1 is necessary for differentiation and activity of iPSC-derived spinal motor neurons.; Cell Death Dis, 14: 741 |
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GSE228681 |
| Tolstorukov, Michael Y et al. (2013) Swi/Snf chromatin remodeling/tumor suppressor complex establishes nucleosome occupancy at target promoters.; Proc Natl Acad Sci U S A, [no vol.]: [no pages] |
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GSE46645 |
| Toma, Jeremy S et al. (2020) Peripheral Nerve Single-Cell Analysis Identifies Mesenchymal Ligands that Promote Axonal Growth.; eNeuro, 7: [no pages] |
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GSE146957 |
| Tomaiuolo, Pasquale et al. (2023) RNA sequencing of blood from sex- and age-matched discordant siblings supports immune and transcriptional dysregulation in autism spectrum disorder.; Sci Rep, 13: 807 |
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GSE212645 |
| Tomaru, Yasuhiro et al. (2014) A transient disruption of fibroblastic transcriptional regulatory network facilitates trans-differentiation.; Nucleic Acids Res, 42: 8905-13 |
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GSE44305 |
| Tomasoni, Romana et al. (2017) Lack of IL-1R8 in neurons causes hyperactivation of IL-1 receptor pathway and induces MECP2-dependent synaptic defects.; Elife, 6: [no pages] |
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GSE80446 |
| Tomasson, Michael H et al. (2008) Somatic mutations and germline sequence variants in the expressed tyrosine kinase genes of patients with de novo acute myeloid leukemia.; Blood, 111: 4797-808 |
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GSE10358 |
| Tomassoni-Ardori, Francesco et al. (2019) Rbfox1 up-regulation impairs BDNF-dependent hippocampal LTP by dysregulating TrkB isoform expression levels.; Elife, 8: [no pages] |
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GSE136253 |
| Tombari, Camilla et al. (2023) Mutant p53 sustains serine-glycine synthesis and essential amino acids intake promoting breast cancer growth.; Nat Commun, 14: 6777 |
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GSE214493 GSE214492 |
| Tomczak, Kinga K et al. (2004) Expression profiling and identification of novel genes involved in myogenic differentiation.; FASEB J, 18: 403-5 |
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GSE989 GSE990 |
| Tomida, Shuta et al. (2009) Relapse-related molecular signature in lung adenocarcinomas identifies patients with dismal prognosis.; J Clin Oncol, 27: 2793-9 |
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GSE13213 |
| Tomimatsu, Nozomi et al. (2025) Targeting cIAP2 in a novel senolytic strategy prevents glioblastoma recurrence after radiotherapy.; EMBO Mol Med, 17: 645-678 |
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GSE271928 |
| Tomita, Yusuke et al. (2022) A novel mouse model of diffuse midline glioma initiated in neonatal oligodendrocyte progenitor cells highlights cell-of-origin dependent effects of H3K27M.; Glia, 70: 1681-1698 |
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GSE184935 |
| Tomkiewicz, Céline et al. (2012) A head and neck cancer tumor response-specific gene signature for cisplatin, 5-fluorouracil induction chemotherapy fails with added taxanes.; PLoS One, 7: e47170 |
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GSE32877 |
| Tomlinson, Joy E et al. (2018) Temporal changes in macrophage phenotype after peripheral nerve injury.; J Neuroinflammation, 15: 185 |
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GSE106488 |
| Tommasini, Dario et al. (2023) Alterations in oligodendrocyte transcriptional networks reveal region-specific vulnerabilities to neurological disease.; iScience, 26: 106358 |
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GSE211162 GSE211281.3 GSE211281.2 GSE211281.1 |
| Tomoda, Kiichiro et al. (2012) Derivation conditions impact X-inactivation status in female human induced pluripotent stem cells.; Cell Stem Cell, 11: 91-9 |
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GSE34527 |
| Tomás, G et al. (2012) A general method to derive robust organ-specific gene expression-based differentiation indices: application to thyroid cancer diagnostic.; Oncogene, 31: 4490-8 |
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GSE33630 GSE29315 |
| Tomé-Carneiro, João et al. (2013) One-year supplementation with a grape extract containing resveratrol modulates inflammatory-related microRNAs and cytokines expression in peripheral blood mononuclear cells of type 2 diabetes and hypertensive patients with coronary artery disease.; Pharmacol Res, 72: 69-82 |
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GSE36930 |
| Tone, Alicia A et al. (2008) Gene expression profiles of luteal phase fallopian tube epithelium from BRCA mutation carriers resemble high-grade serous carcinoma.; Clin Cancer Res, 14: 4067-78 |
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GSE10971 |
| Tone, Mitsuyo et al. (2020) HTR3A is correlated with unfavorable histology and promotes proliferation through ERK phosphorylation in lung adenocarcinoma.; Cancer Sci, 111: 3953-3961 |
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GSE148801 |
| Tonelli, Claudia et al. (2015) Genome-wide analysis of p53 transcriptional programs in B cells upon exposure to genotoxic stress in vivo.; Oncotarget, 6: 24611-26 |
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GSE71176 |
| Tonelli, Claudia et al. (2024) A mucus production programme promotes classical pancreatic ductal adenocarcinoma.; Gut, [no vol.]: [no pages] |
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GSE195502 |
| Tonevitsky, Alexander G et al. (2013) Dynamically regulated miRNA-mRNA networks revealed by exercise.; BMC Physiol, 13: 9 |
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GSE46075 |
| Tong, Jianbin et al. (2013) Expression of ALS-linked TDP-43 mutant in astrocytes causes non-cell-autonomous motor neuron death in rats.; EMBO J, 32: 1917-26 |
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GSE42091 |
| Tong, Louis et al. (2009) Comparison of gene expression profiles of conjunctival cell lines with primary cultured conjunctival epithelial cells and human conjunctival tissue.; Gene Expr, 14: 265-78 |
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GSE8633 |
| Tong, Man et al. (2012) Rab25 is a tumor suppressor gene with antiangiogenic and anti-invasive activities in esophageal squamous cell carcinoma.; Cancer Res, 72: 6024-35 |
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GSE32424 |
| Tong, Si-Han et al. (2025) Activation of TLR4/CCL2 in Intact Neurons Drives Radicular Injury-Induced Global Nerve Trunk Hypersensitivity in Radiculopathy Preclinical Models.; J Pain Res, 18: 3903-3918 |
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GSE246156 |
| Tong, Zhi-Bin et al. (2020) The MT1G Gene in LUHMES Neurons Is a Sensitive Biomarker of Neurotoxicity.; Neurotox Res, 38: 967-978 |
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GSE150005 |
| Tonglin, Hu et al. (2021) Single-Cell RNA-Seq of Bone Marrow Cells in Aplastic Anemia.; Front Genet, 12: 745483 |
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GSE181989 |
| Tooker, Patricia et al. (2007) Bexarotene (LGD1069, Targretin), a selective retinoid X receptor agonist, prevents and reverses gemcitabine resistance in NSCLC cells by modulating gene amplification.; Cancer Res, 67: 4425-33 |
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GSE6914 |
| Tooley, Kyla B et al. (2023) Differential usage of DNA modifications in neurons, astrocytes, and microglia.; Epigenetics Chromatin, 16: 45 |
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GSE228043 |
| Toonen, Erik J M et al. (2012) Validation study of existing gene expression signatures for anti-TNF treatment in patients with rheumatoid arthritis.; PLoS One, 7: e33199 |
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GSE33377 |
| Toonen, Lodewijk J A et al. (2018) Transcriptional profiling and biomarker identification reveal tissue specific effects of expanded ataxin-3 in a spinocerebellar ataxia type 3 mouse model.; Mol Neurodegener, 13: 31 |
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GSE108069 GSE107958 |
| Topham, Caroline et al. (2015) MYC Is a Major Determinant of Mitotic Cell Fate.; Cancer Cell, 28: 129-40 |
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GSE68219 |
| Topol, Aaron et al. (2015) Altered WNT Signaling in Human Induced Pluripotent Stem Cell Neural Progenitor Cells Derived from Four Schizophrenia Patients.; Biol Psychiatry, 78: e29-34 |
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GSE63738 |
| Topol, Aaron et al. (2016) Dysregulation of miRNA-9 in a Subset of Schizophrenia Patient-Derived Neural Progenitor Cells.; Cell Rep, 15: 1024-1036 |
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GSE63734 GSE80170 |
| Torcal Garcia, Guillem et al. (2023) Carm1-arginine methylation of the transcription factor C/EBPα regulates transdifferentiation velocity.; Elife, 12: [no pages] |
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GSE204745 |
| Toren, Eliana et al. (2023) The SSBP3 co-regulator is required for glucose homeostasis, pancreatic islet architecture, and beta-cell identity.; Mol Metab, 76: 101785 |
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GSE232750 |
| Torensma, Ruurd et al. (2013) The impact of cell source, culture methodology, culture location, and individual donors on gene expression profiles of bone marrow-derived and adipose-derived stromal cells.; Stem Cells Dev, 22: 1086-96 |
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GSE42245 |
| Toriseva, Mervi et al. (2012) MMP-13 regulates growth of wound granulation tissue and modulates gene expression signatures involved in inflammation, proteolysis, and cell viability.; PLoS One, 7: e42596 |
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GSE38822 |
| Tornack, Julia et al. (2013) Ectopic Runx1 expression rescues Tal-1-deficiency in the generation of primitive and definitive hematopoiesis.; PLoS One, 8: e70116 |
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GSE46970 |
| Toro, Carlos A et al. (2018) Trithorax dependent changes in chromatin landscape at enhancer and promoter regions drive female puberty.; Nat Commun, 9: 57 |
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GSE94080 |
| Toro, Carlos A et al. (2023) Boldine modulates glial transcription and functional recovery in a murine model of contusion spinal cord injury.; Front Cell Neurosci, 17: 1163436 |
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GSE220907 |
| Toro, Carlos A et al. (2023) Synaptojanin 1 Modulates Functional Recovery After Incomplete Spinal Cord Injury in Male Apolipoprotein E Epsilon 4 Mice.; Neurotrauma Rep, 4: 464-477 |
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GSE227291 |
| Toropainen, Sari et al. (2015) SUMO ligase PIAS1 functions as a target gene selective androgen receptor coregulator on prostate cancer cell chromatin.; Nucleic Acids Res, 43: 848-61 |
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GSE30316 |
| Torre, Sabrina et al. (2017) USP15 regulates type I interferon response and is required for pathogenesis of neuroinflammation.; Nat Immunol, 18: 54-63 |
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GSE79702 |
| Torrecilla, Sara et al. (2017) Trunk mutational events present minimal intra- and inter-tumoral heterogeneity in hepatocellular carcinoma.; J Hepatol, 67: 1222-1231 |
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GSE102383 GSE102451 |
| Torrence, Margaret E et al. (2021) The mTORC1-mediated activation of ATF4 promotes protein and glutathione synthesis downstream of growth signals.; Elife, 10: [no pages] |
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GSE158605 |
| Torres, Josefa et al. (2025) Neddylation regulates the development and function of glutamatergic neurons.; Commun Biol, 8: 1338 |
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GSE269898 |
| Torres, Teresa et al. (2020) Response to fluoxetine in children and adolescents: a weighted gene co-expression network analysis of peripheral blood.; Am J Transl Res, 12: 2028-2040 |
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GSE128387 |
| Torres-Espín, Abel et al. (2013) Gene expression changes in the injured spinal cord following transplantation of mesenchymal stem cells or olfactory ensheathing cells.; PLoS One, 8: e76141 |
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GSE46988 |
| Torres-Martin, Miguel et al. (2013) Microarray analysis of gene expression in vestibular schwannomas reveals SPP1/MET signaling pathway and androgen receptor deregulation.; Int J Oncol, 42: 848-62 |
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GSE39645 |
| Torres-Martin, Miguel et al. (2014) Global expression profile in low grade meningiomas and schwannomas shows upregulation of PDGFD, CDH1 and SLIT2 compared to their healthy tissue.; Oncol Rep, 32: 2327-34 |
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GSE54934 |
| Torres-Mejía, Elen et al. (2020) Sox2 controls Schwann cell self-organization through fibronectin fibrillogenesis.; Sci Rep, 10: 1984 |
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GSE94590 |
| Toscano, Christopher D et al. (2007) Differential gene expression patterns in cyclooxygenase-1 and cyclooxygenase-2 deficient mouse brain.; Genome Biol, 8: R14 |
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GSE5342 |
| Tosic, Milica et al. (2018) Lsd1 regulates skeletal muscle regeneration and directs the fate of satellite cells.; Nat Commun, 9: 366 |
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GSE98133 |
| Tosini, Gianluca et al. (2007) Clock gene expression in the rat retina: effects of lighting conditions and photoreceptor degeneration.; Brain Res, 1159: 134-40 |
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GSE2868 |
| Toskas, Konstantinos et al. (2022) PRC2-mediated repression is essential to maintain identity and function of differentiated dopaminergic and serotonergic neurons.; Sci Adv, 8: eabo1543 |
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GSE189328 |
| Tosti, Elena et al. (2022) Loss of MMR and TGFBR2 Increases the Susceptibility to Microbiota-Dependent Inflammation-Associated Colon Cancer.; Cell Mol Gastroenterol Hepatol, 14: 693-717 |
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GSE183747 GSE183748 |
| Totary-Jain, Hana et al. (2013) Reprogramming of the microRNA transcriptome mediates resistance to rapamycin.; J Biol Chem, 288: 6034-44 |
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GSE19885 |
| Totura, Allison L et al. (2015) Toll-Like Receptor 3 Signaling via TRIF Contributes to a Protective Innate Immune Response to Severe Acute Respiratory Syndrome Coronavirus Infection.; MBio, 6: e00638-15 |
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GSE33266 |
| Touil, Yasmine et al. (2022) p65/RelA NF-κB fragments generated by RIPK3 activity regulate tumorigenicity, cell metabolism, and stemness characteristics.; J Cell Biochem, 123: 543-556 |
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GSE135137 GSE135136 GSE98437 |
| Toussaint, Andre B et al. (2022) Chronic paternal morphine exposure increases sensitivity to morphine-derived pain relief in male progeny.; Sci Adv, 8: eabk2425 |
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GSE174846 |
| Touvier, Thierry et al. (2024) Activation of XBP1s attenuates disease severity in models of proteotoxic Charcot-Marie-Tooth type 1B.; bioRxiv, [no vol.]: [no pages] |
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GSE252089 |
| Tovar, Victoria et al. (2017) Tumour initiating cells and IGF/FGF signalling contribute to sorafenib resistance in hepatocellular carcinoma.; Gut, 66: 530-540 |
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GSE73571 |
| Towers, Aaron J et al. (2018) Epigenetic dysregulation of Oxtr in Tet1-deficient mice has implications for neuropsychiatric disorders.; JCI Insight, 3: [no pages] |
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GSE99674 |
| Towfic, Fadi et al. (2014) Comparing the biological impact of glatiramer acetate with the biological impact of a generic.; PLoS One, 9: e83757 |
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GSE40566 |
| Townley, Brittany A et al. (2023) A functional link between lariat debranching enzyme and the intron-binding complex is defective in non-photosensitive trichothiodystrophy.; Mol Cell, 83: 2258-2275.e11 |
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GSE233383.1 GSE233383.2 |
| Toy, Weiyi et al. (2013) ESR1 ligand-binding domain mutations in hormone-resistant breast cancer.; Nat Genet, 45: 1439-45 |
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GSE51448 |
| Trabzuni, Daniah et al. (2013) Widespread sex differences in gene expression and splicing in the adult human brain.; Nat Commun, 4: 2771 |
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GSE60862 |
| Trakhtenberg, Ephraim F et al. (2014) Regulating Set-?'s Subcellular Localization Toggles Its Function between Inhibiting and Promoting Axon Growth and Regeneration.; J Neurosci, 34: 7361-74 |
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GSE56951 |
| Tölgyesi, Gergely et al. (2009) Gene expression profiling of experimental asthma reveals a possible role of paraoxonase-1 in the disease.; Int Immunol, [no vol.]: [no pages] |
|
GSE11911 |
| Tömböl, Zsófia et al. (2009) Integrative molecular bioinformatics study of human adrenocortical tumors: microRNA, tissue-specific target prediction, and pathway analysis.; Endocr Relat Cancer, [no vol.]: [no pages] |
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GSE14922 |
| Töröcsik, Dániel et al. (2010) Activation of liver X receptor sensitizes human dendritic cells to inflammatory stimuli.; J Immunol, 184: 5456-65 |
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GSE8658 |