List of all 21,870 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Shi, Guangsen et al. (2021) Mutations in Metabotropic Glutamate Receptor 1 Contribute to Natural Short Sleep Trait.; Curr Biol, 31: 13-24.e4 |
|
GSE155252 |
| Shi, Hailing et al. (2018) m6A facilitates hippocampus-dependent learning and memory through YTHDF1.; Nature, 563: 249-253 |
|
GSE106607 |
| Shi, J et al. (2013) The Polycomb complex PRC2 supports aberrant self-renewal in a mouse model of MLL-AF9;Nras(G12D) acute myeloid leukemia.; Oncogene, 32: 930-8 |
|
GSE34183 |
| Shi, Jiantao et al. (2024) Impact of c-JUN deficiency on thalamus development in mice and human neural models.; Cell Biosci, 14: 149 |
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GSE260732 GSE243735 |
| Shi, Junhe et al. (2023) L-Arginine Enhances Oral Keratinocyte Proliferation under High-Glucose Conditions via Upregulation ofCYP1A1,SKP2, andSRSF5.; Molecules, 28: [no pages] |
|
GSE223773 |
| Shi, Lei et al. (2018) Modeling the Pathogenesis of Charcot-Marie-Tooth Disease Type 1A Using Patient-Specific iPSCs.; Stem Cell Reports, 10: 120-133 |
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GSE97851 |
| Shi, Lei et al. (2019) Robust elimination of genome-damaged cells safeguards against brain somatic aneuploidy following Knl1 deletion.; Nat Commun, 10: 2588 |
|
GSE114956 |
| Shi, Leming et al. (2010) The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models.; Nat Biotechnol, 28: 827-38 |
|
GSE24061 GSE20194 GSE24363 GSE24080 |
| Shi, Lewis Z et al. (2011) HIF1alpha-dependent glycolytic pathway orchestrates a metabolic checkpoint for the differentiation of TH17 and Treg cells.; J Exp Med, 208: 1367-76 |
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GSE29765 |
| Shi, Ligen et al. (2020) Genome-wide transcriptomic analysis of microglia reveals impaired responses in aged mice after cerebral ischemia.; J Cereb Blood Flow Metab, 40: S49-S66 |
|
GSE145265 |
| Shi, Ligen et al. (2021) Treg cell-derived osteopontin promotes microglia-mediated white matter repair after ischemic stroke.; Immunity, 54: 1527-1542.e8 |
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GSE171102 GSE171097 |
| Shi, Lihong et al. (2014) Developmental transcriptome analysis of human erythropoiesis.; Hum Mol Genet, 23: 4528-42 |
|
GSE54602 |
| Shi, Ming et al. (2014) A blood-based three-gene signature for the non-invasive detection of early human hepatocellular carcinoma.; Eur J Cancer, 50: 928-36 |
|
GSE49515 |
| Shi, Qian et al. (2026) Purkinje cell-specific loss of Neurofascin and Ankyrin G causes disruption of axon initial segments, neurodegeneration, and cerebellar ataxia.; Front Cell Neurosci, 20: 1690466 |
|
GSE322737 |
| Shi, Sophia M et al. (2025) Glycocalyx dysregulation impairs blood-brain barrier in ageing and disease.; Nature, 639: 985-994 |
|
GSE268263 GSE268642 |
| Shi, Tengfei et al. (2024) Bivalent activity of super-enhancer RNA LINC02454 controls 3D chromatin structure and regulates glioma sensitivity to temozolomide.; Cell Death Dis, 15: 6 |
|
GSE229600 |
| Shi, Tianyuan et al. (2026) Coexpression of MYCN and ALK Induces Neuroblastoma-Like Tumors From Human iPS Cell-Derived Cranial Neural Crest Cells.; Genes Cells, 31: e70083 |
|
GSE287422.1 |
| Shi, Wei et al. (2015) Transcriptional profiling of mouse B cell terminal differentiation defines a signature for antibody-secreting plasma cells.; Nat Immunol, 16: 663-73 |
|
GSE60927 |
| Shi, Weili et al. (2021) METTL3-Mediated N6-Methyladenosine Modification Is Involved in the Dysregulation of NRIP1 Expression in Down Syndrome.; Front Cell Dev Biol, 9: 621374 |
|
GSE160691 |
| Shi, Xi et al. (2023) Heterozygous deletion of the autism-associated gene CHD8 impairs synaptic function through widespread changes in gene expression and chromatin compaction.; Am J Hum Genet, 110: 1750-1768 |
|
GSE236993 |
| Shi, Xianping et al. (2020) EWS-FLI1 regulates and cooperates with core regulatory circuitry in Ewing sarcoma.; Nucleic Acids Res, 48: 11434-11451 |
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GSE141493.1 |
| Shi, Yixing et al. (2025) Oncogenic fusions converge on shared mechanisms in initiating astroblastoma.; Nature, 643: 551-561 |
|
GSE288841 |
| Shi, Yu et al. (2024) Identification of RNA-based cell-type markers for stem-cell manufacturing systems with a statistical scoring function.; Gene Rep, 34: [no pages] |
|
GSE206925 |
| Shi, Yun et al. (2026) TDRD3, a Tudor domain-containing protein, regulatesKlf2-dependent Tregdifferentiation and function to modulate immune tolerance.; Sci Adv, 12: eaea3960 |
|
GSE307870 |
| Shi, Yunxing et al. (2023) PRMT3-mediated arginine methylation of IGF2BP1 promotes oxaliplatin resistance in liver cancer.; Nat Commun, 14: 1932 |
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GSE206501 GSE206502 |
| Shi, Zhanquan et al. (2014) Energy metabolism during anchorage-independence. Induction by osteopontin-c.; PLoS One, 9: e105675 |
|
GSE55193 |
| Shi, Zixiao et al. (2016) Conversion of Fibroblasts to Parvalbumin Neurons by One Transcription Factor, Ascl1, and the Chemical Compound Forskolin.; J Biol Chem, 291: 13560-70 |
|
GSE79146 |
| Shibahara, Daisuke et al. (2023) TIP60 is required for tumorigenesis in non-small cell lung cancer.; Cancer Sci, 114: 2400-2413 |
|
GSE207202 |
| Shibata, Mikihito et al. (2021) Regulation of prefrontal patterning and connectivity by retinoic acid.; Nature, 598: 483-488 |
|
GSE142851 |
| Shibata, Shun et al. (2024) Modeling embryo-endometrial interface recapitulating human embryo implantation.; Sci Adv, 10: eadi4819 |
|
GSE239657 |
| Shibue, Kimitaka et al. (2025) Genome-wide CRISPR Screen Identifies Sec31A as a Key Regulator of Alpha Cell Survival.; Nat Commun, 16: 9159 |
|
GSE222009 |
| Shigeoka, Toshiaki et al. (2016) Dynamic Axonal Translation in Developing and Mature Visual Circuits.; Cell, 166: 181-92 |
|
GSE79352 |
| Shigetomi, Eiji et al. (2024) Disease-relevant upregulation of P2Y1receptor in astrocytes enhances neuronal excitability via IGFBP2.; Nat Commun, 15: 6525 |
|
GSE242450 |
| Shih, Vincent F-S et al. (2012) Control of RelB during dendritic cell activation integrates canonical and noncanonical NF-?B pathways.; Nat Immunol, 13: 1162-70 |
|
GSE34990 |
| Shih, Yu-Tzu et al. (2025) Pro-cognitive restoration of experience-dependent parvalbumin inhibitory neuron plasticity in neurodevelopmental disorders.; Res Sq, [no vol.]: [no pages] |
|
GSE283741 |
| Shilikbay, Temirlan et al. (2025) RNA helicase MOV10 suppresses fear memory and dendritic arborization and regulates microtubule dynamics in hippocampal neurons.; BMC Biol, 23: 36 |
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GSE232771 GSE278282 |
| Shim, Hong Seok et al. (2021) Telomerase Reverse Transcriptase Preserves Neuron Survival and Cognition in Alzheimer's Disease Models.; Nat Aging, 1: 1162-1174 |
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GSE163524 GSE163525 |
| Shim, Hong Seok et al. (2024) TERT activation targets DNA methylation and multiple aging hallmarks.; Cell, 187: 4030-4042.e13 |
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GSE231454.2 GSE231454.1 |
| Shima, James E et al. (2004) The murine testicular transcriptome: characterizing gene expression in the testis during the progression of spermatogenesis.; Biol Reprod, 71: 319-30 |
|
GSE926 |
| Shima, Yasuyuki et al. (2016) A Mammalian enhancer trap resource for discovering and manipulating neuronal cell types.; Elife, 5: e13503 |
|
GSE75229 |
| Shima, Yuichi et al. (2022) Intronic Enhancer Is Essential forNr5a1Expression in the Pituitary Gonadotrope and for Postnatal Development of Male Reproductive Organs in a Mouse Model.; Int J Mol Sci, 24: [no pages] |
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GSE216468 GSE216466 |
| Shimada, Kousuke et al. (2022) Mouse Model of Weak Depression Exhibiting Suppressed cAMP Signaling in the Amygdala, Lower Lipid Catabolism in Liver, and Correlated Gut Microbiota.; Front Behav Neurosci, 16: 841450 |
|
GSE198597 |
| Shimada, Satoshi et al. (2023) Metabolic Responses of Normal Rat Kidneys to a High Salt Intake.; Function (Oxf), 4: zqad031 |
|
GSE224984 |
| Shimazu, Tadahiro et al. (2023) Histidine N1-position-specific methyltransferase CARNMT1 targets C3H zinc finger proteins and modulates RNA metabolism.; Genes Dev, 37: 724-742 |
|
GSE228894 |
| Shimizu, Kazuhide et al. (2023) Photodynamic augmentation of oncolytic virus therapy for central nervous system malignancies.; Cancer Lett, 572: 216363 |
|
GSE222895 |
| Shimizu, Takanori et al. (2023) CRISPR screening in human trophoblast stem cells reveals both shared and distinct aspects of human and mouse placental development.; Proc Natl Acad Sci U S A, 120: e2311372120 |
|
GSE244254 |
| Shimizu, Takashi et al. (2023) Direct activation of microglia by β-glucosylceramide causes phagocytosis of neurons that exacerbates Gaucher disease.; Immunity, 56: 307-319.e8 |
|
GSE202711 |
| Shimizu, Takeshi et al. (2010) Zinc finger genes Fezf1 and Fezf2 control neuronal differentiation by repressing Hes5 expression in the forebrain.; Development, 137: 1875-85 |
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GSE21156 |
| Shimizu, Yoshiko et al. (2018) Genetic deletion of sphingosine kinase 1 suppresses mouse breast tumor development in an HER2 transgenic model.; Carcinogenesis, 39: 47-55 |
|
GSE80413 |
| Shimoda, Michiko et al. (2021) KSHV transactivator-derived small peptide traps coactivators to attenuate MYC and inhibits leukemia and lymphoma cell growth.; Commun Biol, 4: 1330 |
|
GSE174031 |
| Shimogori, Tomomi et al. (2010) A genomic atlas of mouse hypothalamic development.; Nat Neurosci, [no vol.]: [no pages] |
|
GSE21278 |
| Shimomura, Kana et al. (2023) Sleeping Beauty transposon mutagenesis identified genes and pathways involved in inflammation-associated colon tumor development.; Nat Commun, 14: 6514 |
|
GSE217169 |
| Shin, Boyoung et al. (2021) Runx1 and Runx3 drive progenitor to T-lineage transcriptome conversion in mouse T cell commitment via dynamic genomic site switching.; Proc Natl Acad Sci U S A, 118: [no pages] |
|
GSE154304.1 |
| Shin, Hae Young et al. (2014) Molecular and cellular changes in the lumbar spinal cord following thoracic injury: regulation by treadmill locomotor training.; PLoS One, 9: e88215 |
|
GSE52763 |
| Shin, Hye-Jin et al. (2014) Physical status of human papillomavirus integration in cervical cancer is associated with treatment outcome of the patients treated with radiotherapy.; PLoS One, 9: e78995 |
|
GSE49288 |
| Shin, Jessica et al. (2007) Lesional gene expression profiling in cutaneous T-cell lymphoma reveals natural clusters associated with disease outcome.; Blood, 110: 3015-27 |
|
GSE9479 |
| Shin, Ji Eun et al. (2023) Targeting FLT3-TAZ signaling to suppress drug resistance in blast phase chronic myeloid leukemia.; Mol Cancer, 22: 177 |
|
GSE226360 |
| Shin, Jiheon et al. (2017) Characterization of developmental defects in the forebrain resulting from hyperactivated mTOR signaling by integrative analysis of transcriptomic and proteomic data.; Sci Rep, 7: 2826 |
|
GSE93325 |
| Shin, Joseph Yusup et al. (2019) Epigenetic activation and memory at aTGFB2enhancer in systemic sclerosis.; Sci Transl Med, 11: [no pages] |
|
GSE130313 |
| Shin, Kun Woo D et al. (2025) mTOR signaling regulates multiple metabolic pathways in human lung fibroblasts after TGF-β and in pulmonary fibrosis.; Am J Physiol Lung Cell Mol Physiol, 328: L215-L228 |
|
GSE270973 |
| Shin, Min Hwa et al. (2016) A RUNX2-Mediated Epigenetic Regulation of the Survival of p53 Defective Cancer Cells.; PLoS Genet, 12: e1005884 |
|
GSE77352 |
| Shin, Na Ri et al. (2012) Overexpression of Snail is associated with lymph node metastasis and poor prognosis in patients with gastric cancer.; BMC Cancer, 12: 521 |
|
GSE38024 |
| Shin, Sejeong et al. (2023) mTOR inhibition reprograms cellular proteostasis by regulating eIF3D-mediated selective mRNA translation and promotes cell phenotype switching.; Cell Rep, 42: 112868 |
|
GSE229623 |
| Shin, Seula et al. (2021) Qki activates Srebp2-mediated cholesterol biosynthesis for maintenance of eye lens transparency.; Nat Commun, 12: 3005 |
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GSE145475.1 GSE145475.2 |
| Shin, Soona et al. (2011) Foxl1-Cre-marked adult hepatic progenitors have clonogenic and bilineage differentiation potential.; Genes Dev, 25: 1185-92 |
|
GSE28890 |
| Shin, Tae Hwan et al. (2021) Silica-coated magnetic nanoparticles activate microglia and induce neurotoxic D-serine secretion.; Part Fibre Toxicol, 18: 30 |
|
GSE154250 |
| Shinagawa, Toshie et al. (2014) Histone variants enriched in oocytes enhance reprogramming to induced pluripotent stem cells.; Cell Stem Cell, 14: 217-27 |
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GSE53637 |
| Shindyapina, Anastasia V et al. (2014) Dietary methanol regulates human gene activity.; PLoS One, 9: e102837 |
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GSE58349 GSE58303 GSE58364 GSE58348 |
| Shindyapina, Anastasia V et al. (2022) Rapamycin treatment during development extends life span and health span of male mice andDaphnia magna.; Sci Adv, 8: eabo5482 |
|
GSE207865 |
| Shinjo, Keiko et al. (2024) Novel pharmacologic inhibition of lysine-specific demethylase 1 as a potential therapeutic for glioblastoma.; Cancer Gene Ther, [no vol.]: [no pages] |
|
GSE261472 |
| Shinkawa, Tomohiko et al. (2022) Subtypes in pancreatic ductal adenocarcinoma based on niche factor dependency show distinct drug treatment responses.; J Exp Clin Cancer Res, 41: 89 |
|
GSE181593 |
| Shinno, Yoshitaka et al. (2022) Polycomb EZH1 regulates cell cycle/5-fluorouracil sensitivity of neuroblastoma cells in concert with MYCN.; Cancer Sci, 113: 4193-4206 |
|
GSE188673 |
| Shinoda, Yo et al. (2025) The Reversible Neurotoxic Effects of Methylmercury on the Dorsal Root Ganglion: Temporal Dynamics in Rats.; Int J Mol Sci, 27: [no pages] |
|
GSE312165 |
| Shinohara, Hisaaki et al. (2014) Positive feedback within a kinase signaling complex functions as a switch mechanism for NF-?B activation.; Science, 344: 760-4 |
|
GSE41176 |
| Shinohara, Takashi et al. (2023) Allogeneic offspring produced by induction of PD-L1 in spermatogonial stem cells via self-renewal stimulation.; Stem Cell Reports, 18: 985-998 |
|
GSE129546 |
| Shinozaki, Youichi et al. (2022) Astrocytic dysfunction induced by ABCA1 deficiency causes optic neuropathy.; Sci Adv, 8: eabq1081 |
|
GSE207928 |
| Shintani, Tomoya et al. (2024) Long-term d-allose administration ameliorates age-related cognitive impairment and loss of bone strength in male mice.; Exp Gerontol, 196: 112555 |
|
GSE270340 |
| Shioda, Norifumi et al. (2019) Dopamine D2LReceptor Deficiency Causes Stress Vulnerability through 5-HT1AReceptor Dysfunction in Serotonergic Neurons.; J Neurosci, 39: 7551-7563 |
|
GSE124806 |
| Shioda, Toshi et al. (2006) Importance of dosage standardization for interpreting transcriptomal signature profiles: evidence from studies of xenoestrogens.; Proc Natl Acad Sci U S A, 103: 12033-8 |
|
GSE5200 |
| Shioda, Toshi et al. (2013) Expressomal approach for comprehensive analysis and visualization of ligand sensitivities of xenoestrogen responsive genes.; Proc Natl Acad Sci U S A, 110: 16508-13 |
|
GSE50705 |
| Shipp, Margaret A et al. (2002) Diffuse large B-cell lymphoma outcome prediction by gene-expression profiling and supervised machine learning.; Nat Med, 8: 68-74 |
|
GSE68895 shipp-dlbcl |
| Shippy, Daniel C et al. (2022) Transcriptional response of murine microglia in Alzheimer's disease and inflammation.; BMC Genomics, 23: 183 |
|
GSE183038 |
| Shiraishi, Ryo et al. (2024) Cancer-specific epigenome identifies oncogenic hijacking by nuclear factor I family proteins for medulloblastoma progression.; Dev Cell, [no vol.]: [no pages] |
|
GSE241602.2 |
| Shiraishi, Taichi et al. (2024) The complex etiology of autism spectrum disorder due to missense mutations of CHD8.; Mol Psychiatry, 29: 2145-2160 |
|
GSE227579 |