List of all 21,865 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Szpara, Moriah L et al. (2007) Analysis of gene expression during neurite outgrowth and regeneration.; BMC Neurosci, 8: 100 |
|
GSE9740 |
| Sztainberg, Yehezkel et al. (2015) Reversal of phenotypes in MECP2 duplication mice using genetic rescue or antisense oligonucleotides.; Nature, 528: 123-6 |
|
GSE71233 GSE71229 GSE71234 |
| Szuchet, Sara et al. (2011) The genetic signature of perineuronal oligodendrocytes reveals their unique phenotype.; Eur J Neurosci, 34: 1906-22 |
|
GSE11277 |
| Szulwach, Keith E et al. (2011) 5-hmC-mediated epigenetic dynamics during postnatal neurodevelopment and aging.; Nat Neurosci, 14: 1607-16 |
|
GSE32187 |
| Szulzewsky, Frank et al. (2020) Comparison of tumor-associated YAP1 fusions identifies a recurrent set of functions critical for oncogenesis.; Genes Dev, 34: 1051-1064 |
|
GSE137038 |
| Szwarc, Maria M et al. (2018) Human endometrial stromal cell decidualization requires transcriptional reprogramming by PLZF.; Biol Reprod, 98: 15-27 |
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GSE112362 |
| Szwarc, Maria M et al. (2018) Retinoid signaling controlled by SRC-2 in decidualization revealed by transcriptomics.; Reproduction, 156: 387-395 |
|
GSE121584 |
| Szymaniak, Aleksander D et al. (2017) The Hippo pathway effector YAP is an essential regulator of ductal progenitor patterning in the mouse submandibular gland.; Elife, 6: [no pages] |
|
GSE90480 |
| Szymczak, Florian et al. (2022) ADAR1-dependent editing regulates human β cell transcriptome diversity during inflammation.; Front Endocrinol (Lausanne), 13: 1058345 |
|
GSE214851 |
| Sønder, Søren Ulrik et al. (2011) IL-17-induced NF-kappaB activation via CIKS/Act1: physiologic significance and signaling mechanisms.; J Biol Chem, 286: 12881-90 |
|
GSE24873 |
| T?rlungeanu, Dora C et al. (2016) Impaired Amino Acid Transport at the Blood Brain Barrier Is a Cause of Autism Spectrum Disorder.; Cell, 167: 1481-1494.e18 |
|
GSE87808 |
| Tababat-Khani, Poya et al. (2015) Photocoagulation of human retinal pigment epithelium in vitro: unravelling the effects on ARPE-19 by transcriptomics and proteomics.; Acta Ophthalmol, 93: 348-54 |
|
GSE41332 |
| Tabach, Yuval et al. (2011) Amplification of the 20q chromosomal arm occurs early in tumorigenic transformation and may initiate cancer.; PLoS One, 6: e14632 |
|
GSE23038 |
| Tabansky, Inna et al. (2018) Molecular profiling of reticular gigantocellularis neurons indicates that eNOS modulates environmentally dependent levels of arousal.; Proc Natl Acad Sci U S A, 115: E6900-E6909 |
|
GSE115526 |
| Tabari, Denna et al. (2020) Impact of Zika Virus Infection on Human Neural Stem Cell MicroRNA Signatures.; Viruses, 12: [no pages] |
|
GSE157530 |
| Tabata, Sho et al. (2023) L-2hydroxyglutaric acid rewires amino acid metabolism in colorectal cancer via the mTOR-ATF4 axis.; Oncogene, 42: 1294-1307 |
|
GSE210167 |
| Tabchy, Adel et al. (2010) Evaluation of a 30-gene paclitaxel, fluorouracil, doxorubicin, and cyclophosphamide chemotherapy response predictor in a multicenter randomized trial in breast cancer.; Clin Cancer Res, 16: 5351-61 |
|
GSE20271 |
| Tabe, Yoko et al. (2015) Ribosomal Biogenesis and Translational Flux Inhibition by the Selective Inhibitor of Nuclear Export (SINE) XPO1 Antagonist KPT-185.; PLoS One, 10: e0137210 |
|
GSE70479 |
| Tabel, Mona et al. (2022) Genetic targeting or pharmacological inhibition of galectin-3 dampens microglia reactivity and delays retinal degeneration.; J Neuroinflammation, 19: 229 |
|
GSE211119 |
| Tabernero, Maria Dolores et al. (2009) Gene expression profiles of meningiomas are associated with tumor cytogenetics and patient outcome.; Brain Pathol, 19: 409-20 |
|
GSE43290 |
| Tabet, Fatiha et al. (2014) HDL-transferred microRNA-223 regulates ICAM-1 expression in endothelial cells.; Nat Commun, 5: 3292 |
|
GSE53201 |
| Tabibiazar, Raymond et al. (2005) Signature patterns of gene expression in mouse atherosclerosis and their correlation to human coronary disease.; Physiol Genomics, 22: 213-26 |
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GSE1560 |
| Tabone, Olivier et al. (2018) Endogenous Retroviruses Transcriptional Modulation After Severe Infection, Trauma and Burn.; Front Immunol, 9: 3091 |
|
GSE77791 |
| Tabrizian, Nakisa et al. (2023) ASCL1 is activated downstream of the ROR2/CREB signaling pathway to support lineage plasticity in prostate cancer.; Cell Rep, 42: 112937 |
|
GSE224420 |
| Tabuena, Dennis R et al. (2026) Neuronal APOE4-induced early hippocampal network hyperexcitability in Alzheimer's disease pathogenesis.; Nat Aging, 6: 886-904 |
|
GSE279550 |
| Tacchetti, Paola et al. (2014) Bortezomib- and thalidomide-induced peripheral neuropathy in multiple myeloma: clinical and molecular analyses of a phase 3 study.; Am J Hematol, 89: 1085-91 |
|
GSE58133 |
| Tachdjian, Raffi et al. (2009) Pathogenicity of a disease-associated human IL-4 receptor allele in experimental asthma.; J Exp Med, 206: 2191-204 |
|
GSE18010 |
| Tachibana, Ken et al. (2021) Effects of Prenatal Exposure to Titanium Dioxide Nanoparticles on DNA Methylation and Gene Expression Profile in the Mouse Brain.; Front Toxicol, 3: 705910 |
|
GSE178199 |
| Tachibana, Naohiro et al. (2022) RSPO2 defines a distinct undifferentiated progenitor in the tendon/ligament and suppresses ectopic ossification.; Sci Adv, 8: eabn2138 |
|
GSE188759 |
| Taddei, Andrea et al. (2008) Endothelial adherens junctions control tight junctions by VE-cadherin-mediated upregulation of claudin-5.; Nat Cell Biol, 10: 923-34 |
|
GSE11674 |
| Tadele, Dagim Shiferaw et al. (2021) A cell competition-based small molecule screen identifies a novel compound that induces dual c-Myc depletion and p53 activation.; J Biol Chem, 296: 100179 |
|
GSE100678 |
| Tagaya, Mitsuhiro et al. (2009) Eviprostat suppresses proinflammatory gene expression in the prostate of rats with partial bladder-outlet obstruction: a genome-wide DNA microarray analysis.; Cytokine, [no vol.]: [no pages] |
|
GSE16063 |
| Taggart, David et al. (2018) Anti-PD-1/anti-CTLA-4 efficacy in melanoma brain metastases depends on extracranial disease and augmentation of CD8+T cell trafficking.; Proc Natl Acad Sci U S A, 115: E1540-E1549 |
|
GSE109485 |
| Tagne, Jean-Bosco et al. (2015) Transcription factor and microRNA interactions in lung cells: an inhibitory link between NK2 homeobox 1, miR-200c and the developmental and oncogenic factors Nfib and Myb.; Respir Res, 16: 22 |
|
GSE47054 |
| Tagore, Mohita et al. (2023) GABA Regulates Electrical Activity and Tumor Initiation in Melanoma.; Cancer Discov, 13: 2270-2291 |
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GSE236806 |
| Taguchi, Ayumu et al. (2011) Lung cancer signatures in plasma based on proteome profiling of mouse tumor models.; Cancer Cell, 20: 289-99 |
|
GSE28480 |
| Taher, Leila et al. (2011) Global gene expression analysis of murine limb development.; PLoS One, 6: e28358 |
|
GSE30138 |
| Tahiri, Azeddine et al. (2025) Vagal sensory neuron-derived FGF3 controls insulin secretion.; Dev Cell, 60: 51-61.e4 |
|
GSE239596 |
| Tahraoui-Bories, Julie et al. (2023) MBNL-dependent impaired development within the neuromuscular system in myotonic dystrophy type 1.; Neuropathol Appl Neurobiol, 49: e12876 |
|
GSE171988 |
| Tai, Wai Lydia et al. (2023) Suppressing DNMT3a Alleviates the Intrinsic Epigenetic Barrier for Optic Nerve Regeneration and Restores Vision in Adult Mice.; bioRxiv, [no vol.]: [no pages] |
|
GSE229033 |
| Tai, Yu-Tzu et al. (2009) CS1 promotes multiple myeloma cell adhesion, clonogenic growth, and tumorigenicity via c-maf-mediated interactions with bone marrow stromal cells.; Blood, 113: 4309-18 |
|
GSE14680 |
| Taifour, Tarek et al. (2023) The tumor-derived cytokine Chi3l1 induces neutrophil extracellular traps that promote T cell exclusion in triple-negative breast cancer.; Immunity, 56: 2755-2772.e8 |
|
GSE240336 |
| Taira, Ryoji et al. (2024) Gnao1 is a molecular switch that regulates the Rho signaling pathway in differentiating neurons.; Sci Rep, 14: 17097 |
|
GSE241258 |
| Taiwo, Oluwatosin et al. (2013) DNA methylation analysis of murine hematopoietic side population cells during aging.; Epigenetics, 8: 1114-22 |
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GSE41658 |
| Tajima, Yoko et al. (2023) NOVA1 acts on Impact to regulate hypothalamic function and translation in inhibitory neurons.; Cell Rep, 42: 112050 |
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GSE212473 |
| Tajima, Yoko et al. (2025) A humanized NOVA1 splicing factor alters mouse vocal communications.; Nat Commun, 16: 1542 |
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GSE253297 |
| Tak, Jihoon et al. (2022) Gα12overexpression in hepatocytes by ER stress exacerbates acute liver injury via ROCK1-mediated miR-15a and ALOX12 dysregulation.; Theranostics, 12: 1570-1588 |
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GSE173595 |
| Takacova, Sylvia et al. (2012) DNA damage response and inflammatory signaling limit the MLL-ENL-induced leukemogenesis in vivo.; Cancer Cell, 21: 517-31 |
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GSE35038 |
| Takahashi, Eri et al. (2010) Tumor necrosis factor-alpha regulates transforming growth factor-beta-dependent epithelial-mesenchymal transition by promoting hyaluronan-CD44-moesin interaction.; J Biol Chem, 285: 4060-73 |
|
GSE12548 |
| Takahashi, Hideyuki et al. (2024) Reduced progranulin increases tau and α-synuclein inclusions and alters mouse tauopathy phenotypes via glucocerebrosidase.; Nat Commun, 15: 1434 |
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GSE180672 |
| Takahashi, Jun et al. (2024) Differential squamous cell fates elicited by NRF2 gain of function versus KEAP1 loss of function.; Cell Rep, 43: 114104 |
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GSE255927.2 GSE255927.1 |
| Takahashi, Kazuto et al. (2023) Brain-specific glycosylation of protein tyrosine phosphatase receptor type Z (PTPRZ) marks a demyelination-associated astrocyte subtype.; J Neurochem, 166: 547-559 |
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GSE134372 |
| Takahashi, Kazutoshi et al. (2020) Critical Roles of Translation Initiation and RNA Uridylation in Endogenous Retroviral Expression and Neural Differentiation in Pluripotent Stem Cells.; Cell Rep, 31: 107715 |
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GSE129429 |
| Takahashi, Kazutoshi et al. (2021) The pluripotent stem cell-specific transcript ESRG is dispensable for human pluripotency.; PLoS Genet, 17: e1009587 |
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GSE171849 GSE159101 |
| Takahashi, Masayuki et al. (2023) Insulin receptor expression to predict resistance to axitinib and elucidation of the underlying molecular mechanism in metastatic renal cell carcinoma.; Br J Cancer, [no vol.]: [no pages] |
|
GSE230698 |
| Takahashi, Shoko et al. (2011) Mild caloric restriction up-regulates the expression of prohibitin: a proteome study.; Biochem Biophys Res Commun, 405: 462-7 |
|
GSE18297 |
| Takahashi, Shoko et al. (2013) An integrated multi-omics study revealed metabolic alterations underlying the effects of coffee consumption.; PLoS One, 9: e91134 |
|
GSE53131 |
| Takahashi, Takehiro et al. (2022) LINE-1 activation in the cerebellum drives ataxia.; Neuron, 110: 3278-3287.e8 |
|
GSE175776 |
| Takahashi, Yoko et al. (2009) A comparative analysis of genistein and daidzein in affecting lipid metabolism in rat liver.; J Clin Biochem Nutr, 44: 223-30 |
|
GSE41420 |
| Takahashi, Yoko et al. (2011) Tofu (soybean curd) lowers serum lipid levels and modulates hepatic gene expression involved in lipogenesis primarily through its protein, not isoflavone, component in rats.; J Agric Food Chem, 59: 8976-84 |
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GSE23748 |
| Takahata, Yoshifumi et al. (2021) Smoc1 and Smoc2 regulate bone formation as downstream molecules of Runx2.; Commun Biol, 4: 1199 |
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GSE166982 |
| Takalo, Mari et al. (2025) The protective PLCγ2-P522R variant mitigates Alzheimer's disease-associated pathologies by enhancing beneficial microglial functions.; J Neuroinflammation, 22: 64 |
|
GSE277167 |
| Takanezawa, Yuta et al. (2021) Microglial ASD-related genes are involved in oligodendrocyte differentiation.; Sci Rep, 11: 17825 |
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GSE172014 |
| Takano, Morito et al. (2017) Enhanced Functional Recovery from Spinal Cord Injury in Aged Mice after Stem Cell Transplantation through HGF Induction.; Stem Cell Reports, 8: 509-518 |
|
GSE93561 |
| Takao, Keizo et al. (2013) Deficiency of schnurri-2, an MHC enhancer binding protein, induces mild chronic inflammation in the brain and confers molecular, neuronal, and behavioral phenotypes related to schizophrenia.; Neuropsychopharmacology, 38: 1409-25 |
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GSE42777 GSE42775 GSE41307 |
| Takao, S et al. (2018) Targeting the vulnerability to NAD+depletion in B-cell acute lymphoblastic leukemia.; Leukemia, 32: 616-625 |
|
GSE86871 |
| Takaoka, Shohei et al. (2022) Transplanted neural lineage cells derived from dental pulp stem cells promote peripheral nerve regeneration.; Hum Cell, 35: 462-471 |
|
GSE168399 |
| Takashima, Masaru et al. (2024) Glutamate is effective in decreasing opacity formed in galactose-induced cataract model.; Sci Rep, 14: 4123 |
|
GSE227475 |
| Takashima, Seiji et al. (2013) Regulation of pluripotency in male germline stem cells by Dmrt1.; Genes Dev, 27: 1949-58 |
|
GSE43850 |
| Takashima, Shinichiro et al. (2025) Bone marrow-derived NGFR-positive dendritic cells regulate arterial remodeling.; Am J Physiol Cell Physiol, 328: C414-C428 |
|
GSE238076 |
| Takasugi, Masaki et al. (2023) CD44 correlates with longevity and enhances basal ATF6 activity and ER stress resistance.; Cell Rep, 42: 113130 |
|
GSE181404 |
| Takasugi, Masaki et al. (2024) An atlas of the aging mouse proteome reveals the features of age-related post-transcriptional dysregulation.; Nat Commun, 15: 8520 |
|
GSE225576 |
| Takayama, Ken-Ichi et al. (2014) CtBP2 modulates the androgen receptor to promote prostate cancer progression.; Cancer Res, 74: 6542-53 |
|
GSE58309 |
| Takayama, Ken-ichi et al. (2015) RUNX1, an androgen- and EZH2-regulated gene, has differential roles in AR-dependent and -independent prostate cancer.; Oncotarget, 6: 2263-76 |
|
GSE62454 |
| Takayama, Ken-Ichi et al. (2024) Cooperative nuclear action of RNA-binding proteins PSF and G3BP2 to sustain neuronal cell viability is decreased in aging and dementia.; Aging Cell, 23: e14316 |
|
GSE256401 |
| Takayama, Yuzo et al. (2017) Brief exposure to small molecules allows induction of mouse embryonic fibroblasts into neural crest-like precursors.; FEBS Lett, 591: 590-602 |
|
GSE78890 |
| Takeda, Reina et al. (2020) HHEX promotes myeloid transformation in cooperation with mutant ASXL1.; Blood, 136: 1670-1684 |
|
GSE147654 |
| Takeda, Shugaku et al. (2015) Taspase1-dependent TFIIA cleavage coordinates head morphogenesis by limiting Cdkn2a locus transcription.; J Clin Invest, 125: 1203-14 |
|
GSE64533 |
| Takeda, Tomoki et al. (2012) Dioxin silences gonadotropin expression in perinatal pups by inducing histone deacetylases: a new insight into the mechanism for the imprinting of sexual immaturity by dioxin.; J Biol Chem, 287: 18440-50 |
|
GSE32459 |
| Takeda, Tomoki et al. (2014) Maternal exposure to dioxin imprints sexual immaturity of the pups through fixing the status of the reduced expression of hypothalamic gonadotropin-releasing hormone.; Mol Pharmacol, 85: 74-82 |
|
GSE48100 |
| Takeda, Tomoki et al. (2020) Gestational dioxin exposure suppresses prolactin-stimulated nursing in lactating dam rats to impair development of postnatal offspring.; Biochem Pharmacol, 178: 114106 |
|
GSE135931 GSE135932 |
| Takeichi, Takuya et al. (2021) Autoinflammatory Keratinization Disease With Hepatitis and Autism Reveals Roles for JAK1 Kinase Hyperactivity in Autoinflammation.; Front Immunol, 12: 737747 |
|
GSE163100 |
| Takeuchi, Akihide et al. (2018) Loss of Sfpq Causes Long-Gene Transcriptopathy in the Brain.; Cell Rep, 23: 1326-1341 |
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GSE46138 GSE60238 GSE96082 |
| Takeuchi, Jun K et al. (2011) Chromatin remodelling complex dosage modulates transcription factor function in heart development.; Nat Commun, 2: 187 |
|
GSE26191 |
| Taki, Keiko et al. (2009) Microarray analysis of differentially expressed genes in the kidneys and testes of mice after long-term irradiation with low-dose-rate gamma-rays.; J Radiat Res, 50: 241-52 |
|
GSE14290 |
| Takla, Taylor N et al. (2023) A Shared Pathogenic Mechanism for Valproic Acid andSHROOM3Knockout in a Brain Organoid Model of Neural Tube Defects.; Cells, 12: [no pages] |
|
GSE232218 |
| Takouda, Jun et al. (2021) SoxE group transcription factor Sox8 promotes astrocytic differentiation of neural stem/precursor cells downstream of Nfia.; Pharmacol Res Perspect, 9: e00749 |
|
GSE164503 |
| Takuma, Ayako et al. (2017) Gene Expression Analysis of the Effect of Ischemic Infarction in Whole Blood.; Int J Mol Sci, 18: [no pages] |
|
GSE97537 |
| Talantov, Dmitri et al. (2005) Novel genes associated with malignant melanoma but not benign melanocytic lesions.; Clin Cancer Res, 11: 7234-42 |
|
GSE3189 |
| Talavera-López, Carlos et al. (2019) Correction to: Transcriptomes of microglia in experimental cerebral malaria in mice in the presence and absence of Type I Interferon signaling.; BMC Res Notes, 12: 48 |
|
GSE119650 |
| Taïb, Sonia et al. (2025) Vascular dysfunction is at the onset of oxaliplatin-induced peripheral neuropathy symptoms in mice.; Life Sci Alliance, 8: [no pages] |
|
GSE255097 |