List of all 20,326 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Vukic, Maja et al. (2024) CDCA7-associated global aberrant DNA hypomethylation translates to localized, tissue-specific transcriptional responses.; Sci Adv, 10: eadk3384 |
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GSE211950 |
| Vuong, Celine K et al. (2018) Rbfox1 Regulates Synaptic Transmission through the Inhibitory Neuron-Specific vSNARE Vamp1.; Neuron, 98: 127-141.e7 |
|
GSE96722 |
| Vuong, John K et al. (2016) PTBP1 and PTBP2 Serve Both Specific and Redundant Functions in Neuronal Pre-mRNA Splicing.; Cell Rep, 17: 2766-2775 |
|
GSE84803 |
| Vuong, Linh M et al. (2015) Differential Effects of Hepatocyte Nuclear Factor 4α Isoforms on Tumor Growth and T-Cell Factor 4/AP-1 Interactions in Human Colorectal Cancer Cells.; Mol Cell Biol, 35: 3471-90 |
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GSE62889 |
| Wada, Youichiro et al. (2009) A wave of nascent transcription on activated human genes.; Proc Natl Acad Sci U S A, 106: 18357-61 |
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GSE9055 |
| Waddell, Nic et al. (2008) BRCA1 and BRCA2 missense variants of high and low clinical significance influence lymphoblastoid cell line post-irradiation gene expression.; PLoS Genet, 4: e1000080 |
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GSE10905 |
| Waddell, Nic et al. (2010) Gene expression profiling of formalin-fixed, paraffin-embedded familial breast tumours using the whole genome-DASL assay.; J Pathol, 221: 452-61 |
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GSE21921 |
| Wade, Michael G et al. (2008) Methoxyacetic acid-induced spermatocyte death is associated with histone hyperacetylation in rats.; Biol Reprod, 78: 822-31 |
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GSE10032 |
| Wadia, Perinaaz R et al. (2013) Low-dose BPA exposure alters the mesenchymal and epithelial transcriptomes of the mouse fetal mammary gland.; PLoS One, 8: e63902 |
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GSE44387 |
| Wadlow, Raymond C et al. (2009) Systems-level modeling of cancer-fibroblast interaction.; PLoS One, 4: e6888 |
|
GSE17032 |
| Waegaert, Robin et al. (2020) Longitudinal transcriptomic analysis of altered pathways in a CHMP2Bintron5-based model of ALS-FTD.; Neurobiol Dis, 136: 104710 |
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GSE142590 |
| Wage, Justin et al. (2015) Proton irradiation impacts age-driven modulations of cancer progression influenced by immune system transcriptome modifications from splenic tissue.; J Radiat Res, 56: 792-803 |
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GSE67243 |
| Wagner, Alex H et al. (2013) Exon-level expression profiling of ocular tissues.; Exp Eye Res, 111: 105-11 |
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GSE41102 |
| Wagner, Klaus W et al. (2007) Death-receptor O-glycosylation controls tumor-cell sensitivity to the proapoptotic ligand Apo2L/TRAIL.; Nat Med, 13: 1070-7 |
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GSE8332 |
| Wagner, Steve et al. (2019) Suppression of interferon gene expression overcomes resistance to MEK inhibition in KRAS-mutant colorectal cancer.; Oncogene, 38: 1717-1733 |
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GSE118548 |
| Wagner, Tracey H et al. (2007) Surviving sepsis: bcl-2 overexpression modulates splenocyte transcriptional responses in vivo.; Am J Physiol Regul Integr Comp Physiol, 292: R1751-9 |
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GSE5811 |
| Wagner, Wolfgang et al. (2009) Aging and replicative senescence have related effects on human stem and progenitor cells.; PLoS One, 4: e5846 |
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GSE12277 |
| Wahbeh, Marah H et al. (2023) A Missense Variant in CASKIN1's Proline-Rich Region Segregates with Psychosis in a Three-Generation Family.; Genes (Basel), 14: [no pages] |
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GSE268384 |
| Wahbeh, Marah H et al. (2024) A functional schizophrenia-associated genetic variant near the TSNARE1 and ADGRB1 genes.; HGG Adv, 5: 100303 |
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GSE263894 |
| Wahdan-Alaswad, Reema S et al. (2023) Thyroid hormone enhances estrogen-mediated proliferation and cell cycle regulatory pathways in steroid receptor-positive breast Cancer.; Cell Cycle, [no vol.]: 1-20 |
|
GSE131276 |
| Wahl, Devin et al. (2018) Comparing the Effects of Low-Protein and High-Carbohydrate Diets and Caloric Restriction on Brain Aging in Mice.; Cell Rep, 25: 2234-2243.e6 |
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GSE111778 |
| Wahl, Devin et al. (2023) The reverse transcriptase inhibitor 3TC protects against age-related cognitive dysfunction.; Aging Cell, 22: e13798 |
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GSE213848 |
| Wahl, Devin et al. (2024) Nanoligomers targeting NF-κB and NLRP3 reduce neuroinflammation and improve cognitive function with aging and tauopathy.; bioRxiv, [no vol.]: [no pages] |
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GSE251888 |
| Wahl, Devin et al. (2024) The reverse transcriptase inhibitor 3TC modulates hippocampal transcriptome signatures of inflammation in tauopathy model mice.; Exp Gerontol, 192: 112458 |
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GSE243650 |
| Wahlen, Sigrid et al. (2022) The transcription factor RUNX2 drives the generation of human NK cells and promotes tissue residency.; Elife, 11: [no pages] |
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GSE172436 GSE172435 |
| Wahlin, Karl J et al. (2021) CRISPR Generated SIX6 and POU4F2 Reporters Allow Identification of Brain and Optic Transcriptional Differences in Human PSC-Derived Organoids.; Front Cell Dev Biol, 9: 764725 |
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GSE148168 |
| Waindok, Patrick et al. (2019) Multiplex profiling of inflammation-related bioactive lipid mediators in Toxocara canis- and Toxocara cati-induced neurotoxocarosis.; PLoS Negl Trop Dis, 13: e0007706 |
|
GSE66094 |
| Wakamatsu, Ei et al. (2013) Convergent and divergent effects of costimulatory molecules in conventional and regulatory CD4+ T cells.; Proc Natl Acad Sci U S A, 110: 1023-8 |
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GSE42276 |
| Wakasugi, Daiki et al. (2024) A rare olive compound oleacein functions as a TrkB agonist and mitigates neuroinflammation both in vitro and in vivo.; Cell Commun Signal, 22: 309 |
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GSE263605 GSE263606 |
| Wakayama, Sayaka et al. (2013) Successful serial recloning in the mouse over multiple generations.; Cell Stem Cell, 12: 293-7 |
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GSE43476 |
| Wakhloo, Debia et al. (2020) Functional hypoxia drives neuroplasticity and neurogenesis via brain erythropoietin.; Nat Commun, 11: 1313 |
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GSE144444 |
| Wakim, Linda M et al. (2012) The molecular signature of tissue resident memory CD8 T cells isolated from the brain.; J Immunol, [no vol.]: [no pages] |
|
GSE39152 |
| Walavalkar, Kaivalya et al. (2025) Single-cell dynamics of genome-nucleolus interactions captured by nucleolar laser microdissection (NoLMseq).; Nat Commun, 16: 11417 |
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GSE279146 |
| Walayat, Andrew et al. (2024) Maternal e-cigarette exposure alters DNA methylome, site-specific CpG and CH methylation, and transcriptomic signatures in the neonatal brain.; Sci Rep, 14: 24263 |
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GSE278792 |
| Walcher, Tessa et al. (2013) Functional dissection of the paired domain of Pax6 reveals molecular mechanisms of coordinating neurogenesis and proliferation.; Development, 140: 1123-36 |
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GSE35260 |
| Waldhorn, Ithai et al. (2022) Modeling sex differences in humans using isogenic induced pluripotent stem cells.; Stem Cell Reports, 17: 2732-2744 |
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GSE145118 |
| Walenda, Gudrun et al. (2013) TGF-beta1 does not induce senescence of multipotent mesenchymal stromal cells and has similar effects in early and late passages.; PLoS One, 8: e77656 |
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GSE46019 |
| Walentynowicz, Kacper A et al. (2018) In Search for Reliable Markers of Glioma-Induced Polarization of Microglia.; Front Immunol, 9: 1329 |
|
GSE113370 |
| Walerych, Dawid et al. (2016) Proteasome machinery is instrumental in a common gain-of-function program of the p53 missense mutants in cancer.; Nat Cell Biol, 18: 897-909 |
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GSE65458 GSE68248 |
| Wales, Stephanie et al. (2014) Global MEF2 target gene analysis in cardiac and skeletal muscle reveals novel regulation of DUSP6 by p38MAPK-MEF2 signaling.; Nucleic Acids Res, 42: 11349-62 |
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GSE61205 |
| Walhart, Tara A et al. (2023) SMARCB1 Loss in Poorly Differentiated Chordomas Drives Tumor Progression.; Am J Pathol, 193: 456-473 |
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GSE217999 |
| Wali, Vikram B et al. (2014) Convergent and divergent cellular responses by ErbB4 isoforms in mammary epithelial cells.; Mol Cancer Res, 12: 1140-55 |
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GSE57346 |
| Walitt, Brian et al. (2024) Deep phenotyping of post-infectious myalgic encephalomyelitis/chronic fatigue syndrome.; Nat Commun, 15: 907 |
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GSE251872 |
| Walkenhorst, Mark et al. (2024) Protective effect of TCR-mediated MAIT cell activation during experimental autoimmune encephalomyelitis.; Nat Commun, 15: 9287 |
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GSE234291 |
| Walker, Deena M et al. (2018) Cocaine Self-administration Alters Transcriptome-wide Responses in the Brain's Reward Circuitry.; Biol Psychiatry, 84: 867-880 |
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GSE110344 |
| Walker, Deena M et al. (2022) Sex-Specific Transcriptional Changes in Response to Adolescent Social Stress in the Brain's Reward Circuitry.; Biol Psychiatry, 91: 118-128 |
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GSE146472 |
| Walker, Emily et al. (2007) Prediction and testing of novel transcriptional networks regulating embryonic stem cell self-renewal and commitment.; Cell Stem Cell, 1: 71-86 |
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GSE7506 |
| Walker, Emily et al. (2010) Polycomb-like 2 associates with PRC2 and regulates transcriptional networks during mouse embryonic stem cell self-renewal and differentiation.; Cell Stem Cell, 6: 153-66 |
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GSE16364 |
| Walker, Emily M et al. (2014) GATA4 and GATA6 regulate intestinal epithelial cytodifferentiation during development.; Dev Biol, 392: 283-94 |
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GSE49471 |
| Walker, Emma C et al. (2016) Murine Oncostatin M Acts via Leukemia Inhibitory Factor Receptor to Phosphorylate Signal Transducer and Activator of Transcription 3 (STAT3) but Not STAT1, an Effect That Protects Bone Mass.; J Biol Chem, 291: 21703-21716 |
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GSE83418 |
| Walker, Faye M et al. (2023) Rapid PTEFb-dependent transcriptional reorganization underpins the glioma adaptive response to radiotherapy.; bioRxiv, [no vol.]: [no pages] |
|
GSE263946 |
| Walker, Hailee et al. (2024) Protocol for the generation of single-nuclei RNA-seq libraries and quantification of heterogeneous cell types activated during social interaction.; STAR Protoc, 5: 103395 |
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GSE269499.1 GSE269499.2 |
| Walker, John R et al. (2004) Applications of a rat multiple tissue gene expression data set.; Genome Res, 14: 742-9 |
|
GSE952 |
| Walker, Kieran et al. (2023) Inherited CD19 Deficiency Does Not Impair Plasma Cell Formation or Response to CXCL12.; J Clin Immunol, 43: 1543-1556 |
|
GSE219011 |
| Walker, Logan A et al. (2020) CLEAR: coverage-based limiting-cell experiment analysis for RNA-seq.; J Transl Med, 18: 63 |
|
GSE115033 |
| Walker, Logan C et al. (2010) Use of DNA-damaging agents and RNA pooling to assess expression profiles associated with BRCA1 and BRCA2 mutation status in familial breast cancer patients.; PLoS Genet, 6: e1000850 |
|
GSE17764 |
| Walker, Stephen J et al. (2016) A Putative Blood-Based Biomarker for Autism Spectrum Disorder-Associated Ileocolitis.; Sci Rep, 6: 35820 |
|
GSE87847 |
| Walker, Tara L et al. (2016) Lysophosphatidic Acid Receptor Is a Functional Marker of Adult Hippocampal Precursor Cells.; Stem Cell Reports, 6: 552-565 |
|
GSE68270 |
| Walkley, Carl R et al. (2008) Conditional mouse osteosarcoma, dependent on p53 loss and potentiated by loss of Rb, mimics the human disease.; Genes Dev, 22: 1662-76 |
|
GSE9460 |
| Wall, Emma H et al. (2013) Genetic control of estrogen-regulated transcriptional and cellular responses in mouse uterus.; FASEB J, 27: 1874-86 |
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GSE38800 |
| Wallace, Tiffany A et al. (2008) Tumor immunobiological differences in prostate cancer between African-American and European-American men.; Cancer Res, 68: 927-36 |
|
GSE6956 |
| Wallenborn, J Grace et al. (2008) Subchronic inhalation of zinc sulfate induces cardiac changes in healthy rats.; Toxicol Appl Pharmacol, 232: 69-77 |
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GSE11091 |
| Waller, Rachel et al. (2016) Gene expression profiling of the astrocyte transcriptome in multiple sclerosis normal appearing white matter reveals a neuroprotective role.; J Neuroimmunol, 299: 139-146 |
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GSE83670 |
| Waller, Rachel et al. (2022) Transcriptomic Profiling Reveals Discrete Poststroke Dementia Neuronal and Gliovascular Signatures.; Transl Stroke Res, [no vol.]: [no pages] |
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GSE186798.1 GSE186798.2 |
| Waller, Rachel et al. (2024) Establishing mRNA and microRNA interactions driving disease heterogeneity in amyotrophic lateral sclerosis patient survival.; Brain Commun, 6: fcad331 |
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GSE212131 |
| Wallgard, Elisabet et al. (2008) Identification of a core set of 58 gene transcripts with broad and specific expression in the microvasculature.; Arterioscler Thromb Vasc Biol, 28: 1469-76 |
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GSE9202 |
| Walsby, Elisabeth et al. (2014) A novel Cdk9 inhibitor preferentially targets tumor cells and synergizes with fludarabine.; Oncotarget, 5: 375-85 |
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GSE48258 |
| Walsh, Alice M et al. (2017) Triple DMARD treatment in early rheumatoid arthritis modulates synovial T cell activation and plasmablast/plasma cell differentiation pathways.; PLoS One, 12: e0183928 |
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GSE97165 GSE89408 |
| Walsh, Carolyn M et al. (2019) Neutrophils promote CXCR3-dependent itch in the development of atopic dermatitis.; Elife, 8: [no pages] |
|
GSE132173 |
| Walsh, Christopher J et al. (2016) Transcriptomic analysis reveals abnormal muscle repair and remodeling in survivors of critical illness with sustained weakness.; Sci Rep, 6: 29334 |
|
GSE78929 |
| Walsh, L A et al. (2015) RECK controls breast cancer metastasis by modulating a convergent, STAT3-dependent neoangiogenic switch.; Oncogene, 34: 2189-203 |
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GSE56898.1 GSE56898.2 |
| Walsh, Patrick J et al. (2025) Mechanistic and Epigenetic Partitioning of Lamina-Associated Chromatin Revealed by a Genome-Wide Imaging Screen.; bioRxiv, [no vol.]: [no pages] |
|
GSE303855 |
| Walsh, Ryan M et al. (2017) Phf8 loss confers resistance to depression-like and anxiety-like behaviors in mice.; Nat Commun, 8: 15142 |
|
GSE90019 |
| Walter, Bianca et al. (2024) Functionally-instructed modifiers of response to ATR inhibition in experimental glioma.; J Exp Clin Cancer Res, 43: 77 |
|
GSE229614 |
| Walter, M et al. (2010) Expression profiling in peripheral blood reveals signature for penetrance in DYT1 dystonia.; Neurobiol Dis, 38: 192-200 |
|
GSE19419 |
| Walter, Nicole A R et al. (2016) A Systems Approach Implicates a Brain Mitochondrial Oxidative Homeostasis Co-expression Network in Genetic Vulnerability to Alcohol Withdrawal.; Front Genet, 7: 218 |
|
GSE89281 |
| Walters, Dana et al. (2020) Transcriptome analysis in mice treated with vigabatrin identifies dysregulation of genes associated with retinal signaling circuitry.; Epilepsy Res, 166: 106395 |
|
GSE151956 |
| Walters, Dustin M et al. (2013) Clinical, molecular and genetic validation of a murine orthotopic xenograft model of pancreatic adenocarcinoma using fresh human specimens.; PLoS One, 8: e77065 |
|
GSE46385 |
| Walters, Kathie-Anne et al. (2013) Francisella tularensis subsp. tularensis induces a unique pulmonary inflammatory response: role of bacterial gene expression in temporal regulation of host defense responses.; PLoS One, 8: e62412 |
|
GSE44320 |
| Walters, Kathie-Anne et al. (2016) 1918 pandemic influenza virus and Streptococcus pneumoniae co-infection results in activation of coagulation and widespread pulmonary thrombosis in mice and humans.; J Pathol, 238: 85-97 |
|
GSE70445 |
| Walther, Neele et al. (2013) Aberrant lymphocyte enhancer-binding factor 1 expression is characteristic for sporadic Burkitt's lymphoma.; Am J Pathol, 182: 1092-8 |
|
GSE42637 |
| Wamsley, Brie et al. (2018) Rbfox1 Mediates Cell-type-Specific Splicing in Cortical Interneurons.; Neuron, 100: 846-859.e7 |
|
GSE119998 |
| Wamstad, Joseph A et al. (2012) Dynamic and coordinated epigenetic regulation of developmental transitions in the cardiac lineage.; Cell, 151: 206-20 |
|
GSE47948 |
| Wan, Charles et al. (2014) Progesterone activates multiple innate immune pathways in Chlamydia trachomatis-infected endocervical cells.; Am J Reprod Immunol, 71: 165-77 |
|
GSE31149 |
| Wan, Hongyuan et al. (2025) Protein arginine methyltransferase 7 regulates the cell cycle and promotes the progression of prostate cancer.; Oncol Lett, 30: 549 |
|
GSE302155 |
| Wan, Jun et al. (2017) Methylatedcis-regulatory elements mediate KLF4-dependent gene transactivation and cell migration.; Elife, 6: [no pages] |
|
GSE97632 |
| Wan, Liling et al. (2017) ENL links histone acetylation to oncogenic gene expression in acute myeloid leukaemia.; Nature, 543: 265-269 |
|
GSE80774 |
| Wan, Yihan et al. (2015) Splicing function of mitotic regulators links R-loop-mediated DNA damage to tumor cell killing.; J Cell Biol, 209: 235-46 |
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GSE67770.1 GSE67770.2 |
| Wandler, Anica M et al. (2020) Loss of glucocorticoid receptor expression mediates in vivo dexamethasone resistance in T-cell acute lymphoblastic leukemia.; Leukemia, 34: 2025-2037 |
|
GSE141967 |
| Wang, Ajun et al. (2024) Desmoglein-2 Affects Vascular Function in Moyamoya Disease by Interacting with MMP-9 and Influencing PI3K Signaling.; Mol Neurobiol, 61: 6539-6552 |
|
GSE249254 |
| Wang, Andi et al. (2021) An epigenetic circuit controls neurogenic programs during neocortex development.; Development, 148: [no pages] |
|
GSE169164 |
| Wälchli, Thomas et al. (2024) Single-cell atlas of the human brain vasculature across development, adulthood and disease.; Nature, [no vol.]: [no pages] |
|
GSE256492 |