List of all 21,870 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Touil, Yasmine et al. (2022) p65/RelA NF-κB fragments generated by RIPK3 activity regulate tumorigenicity, cell metabolism, and stemness characteristics.; J Cell Biochem, 123: 543-556 |
|
GSE135137 GSE98437 GSE135136 |
| Tourki, Bochra et al. (2024) Convergent and divergent immune aberrations in COVID-19, post-COVID-19-interstitial lung disease, and idiopathic pulmonary fibrosis.; Am J Physiol Cell Physiol, 328: C199-C211 |
|
GSE264196 |
| Toussaint, Andre B et al. (2022) Chronic paternal morphine exposure increases sensitivity to morphine-derived pain relief in male progeny.; Sci Adv, 8: eabk2425 |
|
GSE174846 |
| Touvier, Thierry et al. (2025) Activation of XBP1s attenuates disease severity in models of proteotoxic Charcot-Marie-Tooth type 1B.; Brain, 148: 1978-1993 |
|
GSE252089 |
| Tovar, Victoria et al. (2017) Tumour initiating cells and IGF/FGF signalling contribute to sorafenib resistance in hepatocellular carcinoma.; Gut, 66: 530-540 |
|
GSE73571 |
| Towers, Aaron J et al. (2018) Epigenetic dysregulation of Oxtr in Tet1-deficient mice has implications for neuropsychiatric disorders.; JCI Insight, 3: [no pages] |
|
GSE99674 |
| Towfic, Fadi et al. (2014) Comparing the biological impact of glatiramer acetate with the biological impact of a generic.; PLoS One, 9: e83757 |
|
GSE40566 |
| Townley, Brittany A et al. (2023) A functional link between lariat debranching enzyme and the intron-binding complex is defective in non-photosensitive trichothiodystrophy.; Mol Cell, 83: 2258-2275.e11 |
|
GSE233383.2 GSE233383.1 |
| Townsend, Logan K et al. (2025) GDF15 links adipose tissue lipolysis with anxiety.; Nat Metab, 7: 1004-1017 |
|
GSE267183 |
| Toy, Weiyi et al. (2013) ESR1 ligand-binding domain mutations in hormone-resistant breast cancer.; Nat Genet, 45: 1439-45 |
|
GSE51448 |
| Trabzuni, Daniah et al. (2013) Widespread sex differences in gene expression and splicing in the adult human brain.; Nat Commun, 4: 2771 |
|
GSE60862 |
| Trakhtenberg, Ephraim F et al. (2014) Regulating Set-?'s Subcellular Localization Toggles Its Function between Inhibiting and Promoting Axon Growth and Regeneration.; J Neurosci, 34: 7361-74 |
|
GSE56951 |
| Tran, Dang Minh et al. (2023) Attenuated cerebellar phenotypes in Inpp4a truncation mutants with preserved phosphatase activity.; Dis Model Mech, 16: [no pages] |
|
GSE221867 |
| Tran, Luuli N et al. (2025) Epigenetic priming of neural progenitors by Notch enhances Sonic hedgehog signaling and establishes gliogenic competence.; Genes Dev, 39: 886-906 |
|
GSE295475 |
| Tran, Nguyen Quoc Vuong et al. (2017) Pre-treatment with amitriptyline causes epigenetic up-regulation of neuroprotection-associated genes and has anti-apoptotic effects in mouse neuronal cells.; Neurotoxicol Teratol, 62: 1-12 |
|
GSE63005 |
| Tran, Nicholas M et al. (2014) Mechanistically distinct mouse models for CRX-associated retinopathy.; PLoS Genet, 10: e1004111 |
|
GSE51184 |
| Tran, Quynh T et al. (2009) Chemical genomics of cancer chemopreventive dithiolethiones.; Carcinogenesis, 30: 480-6 |
|
GSE8882 |
| Tran, Stephen S et al. (2019) Widespread RNA editing dysregulation in brains from autistic individuals.; Nat Neurosci, 22: 25-36 |
|
GSE107896 |
| Tran, Thi Thom et al. (2019) Effect of landiolol on sex-related transcriptomic changes in the myocardium during sepsis.; Intensive Care Med Exp, 7: 50 |
|
GSE125042 |
| Tranchevent, Léon-Charles et al. (2023) Systems level analysis of sex-dependent gene expression changes in Parkinson's disease.; NPJ Parkinsons Dis, 9: 8 |
|
GSE168496 |
| Trandem, Kathryn et al. (2011) Highly activated cytotoxic CD8 T cells express protective IL-10 at the peak of coronavirus-induced encephalitis.; J Immunol, 186: 3642-52 |
|
GSE25846 |
| Trapnell, Cole et al. (2013) Differential analysis of gene regulation at transcript resolution with RNA-seq.; Nat Biotechnol, 31: 46-53 |
|
GSE37703 |
| Trapnell, Cole et al. (2014) The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells.; Nat Biotechnol, 32: 381-6 |
|
GSE52529 |
| Traunmüller, Lisa et al. (2016) Control of neuronal synapse specification by a highly dedicated alternative splicing program.; Science, 352: 982-6 |
|
GSE79902 |
| Traunmüller, Lisa et al. (2023) A cell-type-specific alternative splicing regulator shapes synapse properties in a trans-synaptic manner.; Cell Rep, 42: 112173 |
|
GSE209870 |
| Trautwein, Christoph et al. (2021) Tissue metabolites in diffuse glioma and their modulations by IDH1 mutation, histology and treatment.; JCI Insight, [no vol.]: [no pages] |
|
GSE190504 |
| Travelli, Cristina et al. (2023) Extracellular nicotinamide phosphoribosyltransferase (eNAMPT) neutralization counteracts T cell immune evasion in breast cancer.; J Immunother Cancer, 11: [no pages] |
|
GSE223539 |
| Treff, Nathan R et al. (2006) Differentiation of embryonic stem cells conditionally expressing neurogenin 3.; Stem Cells, 24: 2529-37 |
|
GSE3653 |
| Treiber, Thomas et al. (2010) Early B cell factor 1 regulates B cell gene networks by activation, repression, and transcription- independent poising of chromatin.; Immunity, 32: 714-25 |
|
GSE21454 |
| Treister, N S et al. (2005) Sex-related differences in gene expression in salivary glands of BALB/c mice.; J Dent Res, 84: 160-5 |
|
GSE1503 |
| Tremblay, Martine W et al. (2022) Mutations of the histone linker H1-4 in neurodevelopmental disorders and functional characterization of neurons expressing C-terminus frameshift mutant H1.4.; Hum Mol Genet, 31: 1430-1442 |
|
GSE180609 |
| Trevino, Troy N et al. (2024) Engineered Wnt7a ligands rescue blood-brain barrier and cognitive deficits in a COVID-19 mouse model.; Brain, 147: 1636-1643 |
|
GSE240903 |
| Treviño, Lisa R et al. (2009) Germline genomic variants associated with childhood acute lymphoblastic leukemia.; Nat Genet, 41: 1001-5 |
|
GSE17195 |
| Trigila, Anabella P et al. (2023) Accelerated Evolution Analysis Uncovers PKNOX2 as a Key Transcription Factor in the Mammalian Cochlea.; Mol Biol Evol, 40: [no pages] |
|
GSE171921 |
| Trikha, Prashant et al. (2021) Defining the AHR-regulated transcriptome in NK cells reveals gene expression programs relevant to development and function.; Blood Adv, 5: 4605-4618 |
|
GSE173220 |
| Trilling, Mirko et al. (2013) Deciphering the modulation of gene expression by type I and II interferons combining 4sU-tagging, translational arrest and in silico promoter analysis.; Nucleic Acids Res, 41: 8107-25 |
|
GSE30457 |
| Trimarchi, Jeffrey M et al. (2008) Individual retinal progenitor cells display extensive heterogeneity of gene expression.; PLoS One, 3: e1588 |
|
GSE9811 |
| Trimarchi, Thomas et al. (2014) Genome-wide mapping and characterization of Notch-regulated long noncoding RNAs in acute leukemia.; Cell, 158: 593-606 |
|
GSE57982 |
| Trimarco, Amelia et al. (2014) Prostaglandin D2 synthase/GPR44: a signaling axis in PNS myelination.; Nat Neurosci, 17: 1682-92 |
|
GSE61784 |
| Trinklein, Nathan D et al. (2004) The role of heat shock transcription factor 1 in the genome-wide regulation of the mammalian heat shock response.; Mol Biol Cell, 15: 1254-61 |
|
GSE3074 |
| Triolo, Taylor M et al. (2022) Stem-Cell-Derived β-Like Cells with a Functional PTPN2 Knockout Display Increased Immunogenicity.; Cells, 11: [no pages] |
|
GSE211636 |
| Tripathi, Aarti et al. (2021) Lack of Interferon (IFN) Regulatory Factor 8 Associated with Restricted IFN-γ Response Augmented Japanese Encephalitis Virus Replication in the Mouse Brain.; J Virol, 95: e0040621 |
|
GSE154002 |
| Tripathi, Abhai K et al. (2009) Plasmodium falciparum-infected erythrocytes induce NF-kappaB regulated inflammatory pathways in human cerebral endothelium.; Blood, 114: 4243-52 |
|
GSE9861 |
| Tripathi, Ajai et al. (2019) Oligodendrocyte Intrinsic miR-27a Controls Myelination and Remyelination.; Cell Rep, 29: 904-919.e9 |
|
GSE135308 |
| Tripathi, Anusri et al. (2008) Gene expression abnormalities in histologically normal breast epithelium of breast cancer patients.; Int J Cancer, 122: 1557-66 |
|
GSE9574 |
| Tripathi, Subhash K et al. (2017) Genome-wide Analysis of STAT3-Mediated Transcription during Early Human Th17 Cell Differentiation.; Cell Rep, 19: 1888-1901 |
|
GSE67185 |
| Tripathy, Sudeshna et al. (2024) Relaxin Modulates the Genomic Actions and Biological Effects of Estrogen in the Myometrium.; bioRxiv, [no vol.]: [no pages] |
|
GSE275894 |
| Trisno, Stephen L et al. (2018) Esophageal Organoids from Human Pluripotent Stem Cells Delineate Sox2 Functions during Esophageal Specification.; Cell Stem Cell, 23: 501-515.e7 |
|
GSE112886 |
| Triulzi, Tiziana et al. (2015) Whole-transcriptome analysis links trastuzumab sensitivity of breast tumors to both HER2 dependence and immune cell infiltration.; Oncotarget, 6: 28173-82 |
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GSE55348 |
| Trivedi, Priyanka et al. (2017) Targeting Phospholipase D4 Attenuates Kidney Fibrosis.; J Am Soc Nephrol, 28: 3579-3589 |
|
GSE87212 |
| Trivedi, Vrunda et al. (2024) mRNA-based precision targeting of neoantigens and tumor-associated antigens in malignant brain tumors.; Genome Med, 16: 17 |
|
GSE251798 GSE251799 |
| Trizzino, Marco et al. (2018) The Tumor Suppressor ARID1A Controls Global Transcription via Pausing of RNA Polymerase II.; Cell Rep, 23: 3933-3945 |
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GSE104545 |
| Trollet, Capucine et al. (2010) Molecular and phenotypic characterization of a mouse model of oculopharyngeal muscular dystrophy reveals severe muscular atrophy restricted to fast glycolytic fibres.; Hum Mol Genet, 19: 2191-207 |
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GSE26604 |
| Tropea, Daniela et al. (2006) Gene expression changes and molecular pathways mediating activity-dependent plasticity in visual cortex.; Nat Neurosci, 9: 660-8 |
|
GSE4537 |
| Trowbridge, Jennifer J et al. (2009) DNA methyltransferase 1 is essential for and uniquely regulates hematopoietic stem and progenitor cells.; Cell Stem Cell, 5: 442-9 |
|
GSE15840 |
| Trudler, Dorit et al. (2021) Soluble ?-synuclein-antibody complexes activate the NLRP3 inflammasome in hiPSC-derived microglia.; Proc Natl Acad Sci U S A, 118: [no pages] |
|
GSE169065 |
| Truitt, Morgan L et al. (2015) Differential Requirements for eIF4E Dose in Normal Development and Cancer.; Cell, 162: 59-71 |
|
GSE68238 |
| Trujillo, Cleber A et al. (2021) Pharmacological reversal of synaptic and network pathology in human MECP2-KO neurons and cortical organoids.; EMBO Mol Med, 13: e12523 |
|
GSE160146 |
| Truong, Trang Tt et al. (2022) Co-Expression Networks Unveiled Long Non-Coding RNAs as Molecular Targets of Drugs Used to Treat Bipolar Disorder.; Front Pharmacol, 13: 873271 |
|
GSE197966 |
| Truong, Vincent et al. (2025) Transcriptomic analysis and high throughput functional characterization of human induced pluripotent stem cell derived sensory neurons.; Neurobiol Pain, 20: 100216 |
|
GSE275412 |
| Tryndyak, Volodymyr et al. (2012) Interstrain differences in the severity of liver injury induced by a choline- and folate-deficient diet in mice are associated with dysregulation of genes involved in lipid metabolism.; FASEB J, 26: 4592-602 |
|
GSE62362 |
| Tröscher, Anna R et al. (2019) Microglial nodules provide the environment for pathogenic T cells in human encephalitis.; Acta Neuropathol, 137: 619-635 |
|
GSE121010 |
| Tröscher, Anna R et al. (2023) Temporal lobe epilepsy with GAD antibodies: neurons killed by T cells not by complement membrane attack complex.; Brain, 146: 1436-1452 |
|
GSE209793 |
| Tršelič, Tilen et al. (2025) Autoimmunity-associated DIORA1 binds the MRCK family of serine/threonine kinases and controls cell motility.; Proc Natl Acad Sci U S A, 122: e2426917122 |
|
GSE299540 |
| Tsai, Andy P et al. (2023) Genetic variants of phospholipase C-γ2 alter the phenotype and function of microglia and confer differential risk for Alzheimer's disease.; Immunity, 56: 2121-2136.e6 |
|
GSE237493 |
| Tsai, Chen-An et al. (2013) Identifying gene set association enrichment using the coefficient of intrinsic dependence.; PLoS One, 8: e58851 |
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GSE17040 GSE9309 |
| Tsai, Chia-Lung et al. (2026) SOX4-STAT6-MTHFD2 axis drives hepatocellular carcinoma progression and treatment resistance.; Cell Death Dis, 17: 154 |
|
GSE277540 |
| Tsai, Feng-Chun et al. (2016) Differential left-to-right atria gene expression ratio in human sinus rhythm and atrial fibrillation: Implications for arrhythmogenesis and thrombogenesis.; Int J Cardiol, 222: 104-12 |
|
GSE79768 |
| Tsai, Harrison K et al. (2017) Gene expression signatures of neuroendocrine prostate cancer and primary small cell prostatic carcinoma.; BMC Cancer, 17: 759 |
|
GSE104786 |
| Tsai, Jui-Feng et al. (2023) Neurotoxicity of mycotoxin citrinin: Novel evidence in developing zebrafish and underlying mechanisms in human neuron cells.; Food Chem Toxicol, 171: 113543 |
|
GSE211723 |
| Tsai, Pai-Chi et al. (2014) MiR-153 targets the nuclear factor-1 family and protects against teratogenic effects of ethanol exposure in fetal neural stem cells.; Biol Open, 3: 741-58 |
|
GSE49684 |
| Tsai, S et al. (2011) Transcriptional profiling of human placentas from pregnancies complicated by preeclampsia reveals disregulation of sialic acid acetylesterase and immune signalling pathways.; Placenta, 32: 175-82 |
|
GSE25906 |
| Tsai, Zong-Yun et al. (2010) A feeder-free culture using autogeneic conditioned medium for undifferentiated growth of human embryonic stem cells: comparative expression profiles of mRNAs, microRNAs and proteins among different feeders and conditioned media.; BMC Cell Biol, 11: 76 |
|
GSE19902 |
| Tsai-Morris, Chon-Hwa et al. (2012) Role of gonadotropin regulated testicular RNA helicase (GRTH/Ddx25) on polysomal associated mRNAs in mouse testis.; PLoS One, 7: e32470 |
|
GSE33860 |
| Tsalenchuk, Maria et al. (2025) Unique nigral and cortical pathways implicated by epigenomic and transcriptional analyses in rotenone Parkinson's model.; NPJ Parkinsons Dis, 11: 217 |
|
GSE280520 |
| Tsalik, Ephraim L et al. (2014) An integrated transcriptome and expressed variant analysis of sepsis survival and death.; Genome Med, 6: 111 |
|
GSE63042 |
| Tsan, Linda et al. (2022) Early-life low-calorie sweetener consumption disrupts glucose regulation, sugar-motivated behavior, and memory function in rats.; JCI Insight, 7: [no pages] |
|
GSE212589 |
| Tsang, John S et al. (2014) Global analyses of human immune variation reveal baseline predictors of postvaccination responses.; Cell, 157: 499-513 |
|
GSE47353 |
| Tsang, Wan-Hong et al. (2013) LIF-dependent primitive neural stem cells derived from mouse ES cells represent a reversible stage of neural commitment.; Stem Cell Res, 11: 1091-102 |
|
GSE44608 |
| Tsaytler, Pavel et al. (2023) BMP4 triggers regulatory circuits specifying the cardiac mesoderm lineage.; Development, 150: [no pages] |
|
GSE168580 |
| Tsaytler, Pavel et al. (2024) Early neural specification of stem cells is mediated by a set of SOX2-dependent neural-associated enhancers.; Stem Cell Reports, 19: 618-628 |
|
GSE240327 |
| Tse, Christin et al. (2008) ABT-263: a potent and orally bioavailable Bcl-2 family inhibitor.; Cancer Res, 68: 3421-8 |
|
GSE10841 |
| Tseng, B S et al. (2002) Regenerated mdx mouse skeletal muscle shows differential mRNA expression.; J Appl Physiol (1985), 93: 537-45 |
|
GSE466 |
| Tseng, Kuan-Yin et al. (2023) Augmenting hematoma-scavenging capacity of innate immune cells by CDNF reduces brain injury and promotes functional recovery after intracerebral hemorrhage.; Cell Death Dis, 14: 128 |
|
GSE216547 |
| Tseng, Pang-Yen et al. (2025) Upregulated natriuretic peptide B expression as a hallmark of chronic itch.; Pain, [no vol.]: [no pages] |
|
GSE293900 |
| Tseng, Yu-Chou et al. (2015) Preclinical Investigation of the Novel Histone Deacetylase Inhibitor AR-42 in the Treatment of Cancer-Induced Cachexia.; J Natl Cancer Inst, 107: djv274 |
|
GSE65936 |
| Tseng, Yu-Hua et al. (2005) Prediction of preadipocyte differentiation by gene expression reveals role of insulin receptor substrates and necdin.; Nat Cell Biol, 7: 601-11 |
|
GSE2556 |
| Tsiami, Foteini et al. (2024) Genome-wide CRISPR-Cas9 knockout screens identify DNMT1 as a druggable dependency in sonic hedgehog medulloblastoma.; Acta Neuropathol Commun, 12: 125 |
|
GSE269462 |
| Tsimakouridze, Elena V et al. (2012) Chronomics of pressure overload-induced cardiac hypertrophy in mice reveals altered day/night gene expression and biomarkers of heart disease.; Chronobiol Int, 29: 810-21 |
|
GSE36407 |
| Tsingas, Maria et al. (2020) Sox9 deletion causes severe intervertebral disc degeneration characterized by apoptosis, matrix remodeling, and compartment-specific transcriptomic changes.; Matrix Biol, 94: 110-133 |
|
GSE150850 |
| Tsitkanou, Stavroula et al. (2023) Biological sex divergence in transcriptomic profiles during the onset of hindlimb unloading-induced atrophy.; Am J Physiol Cell Physiol, 325: C1276-C1293 |
|
GSE240814 |
| Tsitsikov, Erdyni N et al. (2023) Specific gene expression signatures of low grade meningiomas.; Front Oncol, 13: 1126550 |
|
GSE221429 |
| Tsitsikov, Erdyni N et al. (2024) Spontaneous mutation in 2310061I04Rik results in reduced expression of mitochondrial genes and impaired brain myelination.; PLoS One, 19: e0290487 |
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GSE275372 GSE275376 GSE275375 |