List of all 20,073 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Zhang, Mingzi et al. (2025) Brain pericytes derived from human pluripotent stem cells retain vascular and phagocytic functions under hypoxia.; Stem Cells, 43: [no pages] |
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GSE304315 |
| Zhang, Nan et al. (2024) Physiological regulation of neuronal Wnt activity is essential for TDP-43 localization and function.; EMBO J, 43: 3388-3413 |
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GSE246462 |
| Zhang, Ning et al. (2015) Protein misfolding and the pathogenesis of ABCA4-associated retinal degenerations.; Hum Mol Genet, 24: 3220-37 |
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GSE63772 |
| Zhang, Pan et al. (2018) Brain region-dependent gene networks associated with selective breeding for increased voluntary wheel-running behavior.; PLoS One, 13: e0201773 |
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GSE114062 |
| Zhang, Pan et al. (2019) Opioid-Induced Hyperalgesia Is Associated with Dysregulation of Circadian Rhythm and Adaptive Immune Pathways in the Mouse Trigeminal Ganglia and Nucleus Accumbens.; Mol Neurobiol, 56: 7929-7949 |
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GSE126662 |
| Zhang, Peipei et al. (2021) The role of interferon regulatory factor 8 for retinal tissue homeostasis and development of choroidal neovascularisation.; J Neuroinflammation, 18: 215 |
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GSE182504 |
| Zhang, Peisu et al. (2015) Novel RNA- and FMRP-binding protein TRF2-S regulates axonal mRNA transport and presynaptic plasticity.; Nat Commun, 6: 8888 |
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GSE72887 |
| Zhang, Pili et al. (2017) DNA methylation alters transcriptional rates of differentially expressed genes and contributes to pathophysiology in mice fed a high fat diet.; Mol Metab, 6: 327-339 |
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GSE85423 |
| Zhang, Pingzhao et al. (2017) Intrinsic BET inhibitor resistance in SPOP-mutated prostate cancer is mediated by BET protein stabilization and AKT-mTORC1 activation.; Nat Med, 23: 1055-1062 |
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GSE78213 |
| Zhang, Qi et al. (2023) Identifying STRN3-RARA as a new fusion gene for acute promyelocytic leukemia.; Blood, 142: 1494-1499 |
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GSE224815 |
| Zhang, Qian et al. (2024) Single-Cell Transcriptome Reveals Cell Type-Specific Molecular Pathology in a 2VO Cerebral Ischemic Mouse Model.; Mol Neurobiol, 61: 5248-5264 |
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GSE171393 |
| Zhang, Qiangqiang et al. (2016) The Zinc Finger Transcription Factor Sp9 Is Required for the Development of Striatopallidal Projection Neurons.; Cell Rep, 16: 1431-1444 |
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GSE83373 |
| Zhang, Qianying et al. (2024) Spermidine-eIF5A axis is essential for muscle stem cell activation via translational control.; Cell Discov, 10: 94 |
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GSE221641 |
| Zhang, Qing-Shuo et al. (2015) Oxymetholone therapy of fanconi anemia suppresses osteopontin transcription and induces hematopoietic stem cell cycling.; Stem Cell Reports, 4: 90-102 |
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GSE58724 |
| Zhang, Qingquan et al. (2018) Temporal requirements for ISL1 in sympathetic neuron proliferation, differentiation, and diversification.; Cell Death Dis, 9: 247 |
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GSE93306 |
| Zhang, Qingxiu et al. (2019) The interleukin-4/PPARγ signaling axis promotes oligodendrocyte differentiation and remyelination after brain injury.; PLoS Biol, 17: e3000330 |
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GSE131774 |
| Zhang, Qingyang et al. (2021) Nuclear speckle specific hnRNP D-like prevents age- and AD-related cognitive decline by modulating RNA splicing.; Mol Neurodegener, 16: 66 |
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GSE164170 GSE169281 |
| Zhang, Qunzhou et al. (2021) Harnessing 3D collagen hydrogel-directed conversion of human GMSCs into SCP-like cells to generate functionalized nerve conduits.; NPJ Regen Med, 6: 59 |
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GSE180519 |
| Zhang, Ray et al. (2014) A circadian gene expression atlas in mammals: implications for biology and medicine.; Proc Natl Acad Sci U S A, 111: 16219-24 |
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GSE54650 GSE54651 |
| Zhang, RongKai et al. (2012) Gene expression analyses of subchondral bone in early experimental osteoarthritis by microarray.; PLoS One, 7: e32356 |
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GSE30322 |
| Zhang, Roy et al. (2024) Assessment of biological organ age using molecular pathology in pre-transplant kidney biopsies.; Kidney Int, 106: 302-316 |
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GSE222868 |
| Zhang, Ruixin et al. (2024) Intravenous chaperone treatment of late-stage Alzheimer´s disease (AD) mouse model affects amyloid plaque load, reactive gliosis and AD-related genes.; Transl Psychiatry, 14: 453 |
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GSE263166 |
| Zhang, Runrui et al. (2019) Id4 Downstream of Notch2 Maintains Neural Stem Cell Quiescence in the Adult Hippocampus.; Cell Rep, 28: 1485-1498.e6 |
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GSE116773 |
| Zhang, S et al. (2005) Molecular correlates of emotional learning using genetically selected rat lines.; Genes Brain Behav, 4: 99-109 |
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GSE932 |
| Zhang, Sheng et al. (2023) Decellularised spinal cord matrix manipulates glial niche into repairing phase via serglycin-mediated signalling pathway.; Cell Prolif, 56: e13429 |
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GSE202724 |
| Zhang, Shiqun et al. (2021) Nonpeptidergic neurons suppress mast cells via glutamate to maintain skin homeostasis.; Cell, 184: 2151-2166.e16 |
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GSE165295 GSE143569 |
| Zhang, Shirley L et al. (2021) A circadian clock regulates efflux by the blood-brain barrier in mice and human cells.; Nat Commun, 12: 617 |
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GSE135874 |
| Zhang, Shuai et al. (2024) Mediator MED23 controls oligodendrogenesis and myelination by modulating Sp1/P300-directed gene programs.; Cell Discov, 10: 102 |
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GSE226122 |
| Zhang, Shuang-Feng et al. (2022) The epigenetic state of EED-Gli3-Gli1 regulatory axis controls embryonic cortical neurogenesis.; Stem Cell Reports, 17: 2064-2080 |
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GSE169395 |
| Zhang, Shujun et al. (2023) Chromatin accessibility uncovers KRAS-driven FOSL2 promoting pancreatic ductal adenocarcinoma progression through up-regulation of CCL28.; Br J Cancer, 129: 426-443 |
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GSE190903 |
| Zhang, Shuqing et al. (2025) Phlorizin ameliorates cognitive and behavioral impairments via the microbiota-gut-brain axis in high-fat and high-fructose diet-induced obese male mice.; Brain Behav Immun, 123: 193-210 |
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GSE261887 |
| Zhang, Siming et al. (2021) Network Effects of the 15q13.3 Microdeletion on the Transcriptome and Epigenome in Human-Induced Neurons.; Biol Psychiatry, 89: 497-509 |
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GSE135131 |
| Zhang, Siwei et al. (2018) Open chromatin dynamics reveals stage-specific transcriptional networks in hiPSC-based neurodevelopmental model.; Stem Cell Res, 29: 88-98 |
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GSE102352 |
| Zhang, Sui et al. (2012) Identification of the molecular basis of doxorubicin-induced cardiotoxicity.; Nat Med, 18: 1639-42 |
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GSE40289 |
| Zhang, T et al. (2017) MicroRNA-155 regulates casein kinase 1 gamma 2: a potential pathogenetic role in chronic lymphocytic leukemia.; Blood Cancer J, 7: e606 |
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GSE29605 |
| Zhang, Tao et al. (2023) Metabolic orchestration of cell death by AMPK-mediated phosphorylation of RIPK1.; Science, 380: 1372-1380 |
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GSE173938 |
| Zhang, Tianyi et al. (2012) Host genes related to paneth cells and xenobiotic metabolism are associated with shifts in human ileum-associated microbial composition.; PLoS One, 7: e30044 |
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GSE24287 |
| Zhang, Tie-Yuan et al. (2018) Environmental enrichment increases transcriptional and epigenetic differentiation between mouse dorsal and ventral dentate gyrus.; Nat Commun, 9: 298 |
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GSE95740 |
| Zhang, Ting et al. (2019) Human Neural Stem Cells Reinforce Hippocampal Synaptic Network and Rescue Cognitive Deficits in a Mouse Model of Alzheimer's Disease.; Stem Cell Reports, 13: 1022-1037 |
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GSE107806 |
| Zhang, Tong et al. (2009) Enzymes in the NAD+ salvage pathway regulate SIRT1 activity at target gene promoters.; J Biol Chem, 284: 20408-17 |
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GSE13458.1 GSE13458.2 GSE13459 GSE13449 |
| Zhang, Wei et al. (2009) Use of cell lines in the investigation of pharmacogenetic loci.; Curr Pharm Des, 15: 3782-95 |
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GSE9703 |
| Zhang, Wei et al. (2023) HRS mediates tumor immune evasion by regulating proteostasis-associated interferon pathway activation.; Cell Rep, 42: 113352 |
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GSE244678 |
| Zhang, Weiyu et al. (2025) METTL3-dependent m6A RNA methylation regulates transposable elements and represses human naïve pluripotency through transposable element-derived enhancers.; Nucleic Acids Res, 53: [no pages] |
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GSE274217 |
| Zhang, Wen Cai et al. (2012) Glycine decarboxylase activity drives non-small cell lung cancer tumor-initiating cells and tumorigenesis.; Cell, 148: 259-72 |
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GSE33198 |
| Zhang, Wen Cai et al. (2016) Tumour-initiating cell-specific miR-1246 and miR-1290 expression converge to promote non-small cell lung cancer progression.; Nat Commun, 7: 11702 |
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GSE69630 |
| Zhang, Wenbo et al. (2024) Theophylline derivatives promote primordial follicle activation via cAMP-PI3K/Akt pathway and ameliorate fertility deficits in naturally aged mice.; Int J Biol Sci, 20: 5312-5329 |
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GSE263843 |
| Zhang, Wendiao et al. (2023) Human forebrain organoids-based multi-omics analyses reveal PCCB's regulation on GABAergic system contributing to schizophrenia.; Res Sq, [no vol.]: [no pages] |
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GSE226233 |
| Zhang, Wenhao et al. (2016) Isoform Switch of TET1 Regulates DNA Demethylation and Mouse Development.; Mol Cell, 64: 1062-1073 |
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GSE77453 |
| Zhang, Wenhao et al. (2020) Inhibition of Apoptosis Reduces Diploidization of Haploid Mouse Embryonic Stem Cells during Differentiation.; Stem Cell Reports, 15: 185-197 |
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GSE148118 |
| Zhang, Wenhao et al. (2023) IL-13 Activates Cutaneous Schwann Cells to Promote CCL7-Dependent Pruritic Signaling in Atopic Dermatitis.; J Invest Dermatol, [no vol.]: [no pages] |
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GSE218436 |
| Zhang, Wenlong et al. (2023) Neuroprotective effect of a medium-chain triglyceride ketogenic diet on MPTP-induced Parkinson's disease mice: a combination of transcriptomics and metabolomics in the substantia nigra and fecal microbiome.; Cell Death Discov, 9: 251 |
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GSE232039 |
| Zhang, Xi et al. (2023) Irisin exhibits neuroprotection by preventing mitochondrial damage in Parkinson's disease.; NPJ Parkinsons Dis, 9: 13 |
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GSE214542 |
| Zhang, Xiang H-F et al. (2013) Selection of bone metastasis seeds by mesenchymal signals in the primary tumor stroma.; Cell, 154: 1060-73 |
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GSE47389 |
| Zhang, Xiaodi et al. (2025) Lewy body dementia promotion by air pollutants.; Science, 389: eadu4132 |
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GSE297423 |
| Zhang, Xiaofang et al. (2025) The nucleocytoplasmic translocation of HINT1 regulates the maturation of cell density.; Life Sci Alliance, 8: [no pages] |
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GSE270956 |
| Zhang, Xiaoling et al. (2010) Similarities and differences between smoking-related gene expression in nasal and bronchial epithelium.; Physiol Genomics, 41: 1-8 |
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GSE16008 |
| Zhang, Xiaolu et al. (2023) Ribosomal dysregulation: A conserved pathophysiological mechanism in human depression and mouse chronic stress.; PNAS Nexus, 2: pgad299 |
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GSE229905 |
| Zhang, Xiaomei et al. (2013) A renewable tissue resource of phenotypically stable, biologically and ethnically diverse, patient-derived human breast cancer xenograft models.; Cancer Res, 73: 4885-97 |
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GSE46106 |
| Zhang, Xiaomin et al. (2011) Identification of New SRF Binding Sites in Genes Modulated by SRF Over-Expression in Mouse Hearts.; Gene Regul Syst Bio, 5: 41-59 |
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GSE19874 |
| Zhang, Xiaoming et al. (2022) Epigenetic regulation of innate immune memory in microglia.; J Neuroinflammation, 19: 111 |
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GSE175578.2 GSE175578.1 |
| Zhang, Xiaonan et al. (2014) Induction of mitochondrial dysfunction as a strategy for targeting tumour cells in metabolically compromised microenvironments.; Nat Commun, 5: 3295 |
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GSE53777 |
| Zhang, Xiaoru et al. (2023) Nickel-induced transcriptional memory in lung epithelial cells promotes interferon signaling upon nicotine exposure.; Toxicol Appl Pharmacol, 481: 116753 |
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GSE242791 |
| Zhang, Xiaoshen et al. (2024) RAC1 inhibition ameliorates IBSP-induced bone metastasis in lung adenocarcinoma.; Cell Rep, 43: 114528 |
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GSE225208 |
| Zhang, Xiaotan et al. (2024) Both partial inactivation as well as activation of NF-κB signaling lead to hypertension and chronic kidney disease.; Nephrol Dial Transplant, 39: 1993-2004 |
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GSE244099 |
| Zhang, Xin et al. (2009) IFN-beta1a inhibits the secretion of Th17-polarizing cytokines in human dendritic cells via TLR7 up-regulation.; J Immunol, 182: 3928-36 |
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GSE14386 |
| Zhang, Xingli et al. (2018) Macrophage/microglial Ezh2 facilitates autoimmune inflammation through inhibition of Socs3.; J Exp Med, 215: 1365-1382 |
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GSE101316 |
| Zhang, Xingnan et al. (2024) TSPO deficiency promotes the progression of malignant peripheral sheath tumors by regulating the G2/M phase of the cell cycle via CDK1.; Sci Rep, 14: 26235 |
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GSE270880 |
| Zhang, Xiujuan et al. (2022) Transcriptional Repression of Aerobic Glycolysis by OVOL2 in Breast Cancer.; Adv Sci (Weinh), 9: e2200705 |
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GSE189947 |
| Zhang, Xu et al. (2014) Iron deficiency modifies gene expression variation induced by augmented hypoxia sensing.; Blood Cells Mol Dis, 52: 35-45 |
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GSE40227 |
| Zhang, Xu et al. (2024) CHD2 Regulates Neuron-Glioma Interactions in Pediatric Glioma.; Cancer Discov, 14: 1732-1754 |
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GSE211074 |
| Zhang, Xuan et al. (2024) Cockayne Syndrome Linked to Elevated R-Loops Induced by Stalled RNA Polymerase II during Transcription Elongation.; Nat Commun, 15: 6031 |
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GSE226204.1 |
| Zhang, Xuying et al. (2023) Bulk and mosaic deletions ofEgfrreveal regionally defined gliogenesis in the developing mouse forebrain.; iScience, 26: 106242 |
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GSE205624 GSE214424 |
| Zhang, Y et al. (2012) Retinoic acid and tumor necrosis factor-? induced monocytic cell gene expression is regulated in part by induction of transcription factor MafB.; Exp Cell Res, 318: 2407-16 |
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GSE28995 |
| Zhang, Yafang et al. (2016) Transcriptomics of Environmental Enrichment Reveals a Role for Retinoic Acid Signaling in Addiction.; Front Mol Neurosci, 9: 119 |
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GSE88736 |
| Zhang, Yandong et al. (2021) Transcription factor 4 controls positioning of cortical projection neurons through regulation of cell adhesion.; Mol Psychiatry, [no vol.]: [no pages] |
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GSE166412 |
| Zhang, Yang et al. (2021) Optimized RNA-targeting CRISPR/Cas13d technology outperforms shRNA in identifying functional circRNAs.; Genome Biol, 22: 41 |
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GSE162720 |
| Zhang, Yang et al. (2023) HDAC9-mediated epithelial cell cycle arrest in G2/M contributes to kidney fibrosis in male mice.; Nat Commun, 14: 3007 |
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GSE217176 |
| Zhang, Yangyi et al. (2024) TRIB3 inhibition by palbociclib sensitizes prostate cancer to ferroptosis via downregulating SOX2/SLC7A11 expression.; Cell Death Discov, 10: 425 |
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GSE273622 |
| Zhang, Yanli et al. (2005) Transcriptional analysis of multiple brain regions in Parkinson's disease supports the involvement of specific protein processing, energy metabolism, and signaling pathways, and suggests novel disease mechanisms.; Am J Med Genet B Neuropsychiatr Genet, 137B: 5-16 |
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GSE20168 GSE20291 GSE20292 |
| Zhang, Yanli et al. (2022) miR-124 regulates early isolation-induced social abnormalities via inhibiting myelinogenesis in the medial prefrontal cortex.; Cell Mol Life Sci, 79: 507 |
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GSE162343 |
| Zhang, Yaohua et al. (2022) Hormonal therapies up-regulate MANF and overcome female susceptibility to immune checkpoint inhibitor myocarditis.; Sci Transl Med, 14: eabo1981 |
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GSE145573 |
| Zhang, Ye et al. (2014) An RNA-sequencing transcriptome and splicing database of glia, neurons, and vascular cells of the cerebral cortex.; J Neurosci, 34: 11929-47 |
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GSE52564 |
| Zhang, Ye et al. (2016) Purification and Characterization of Progenitor and Mature Human Astrocytes Reveals Transcriptional and Functional Differences with Mouse.; Neuron, 89: 37-53 |
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GSE73721.1 GSE73721.2 |
| Zhang, Yi et al. (2009) The 76-gene signature defines high-risk patients that benefit from adjuvant tamoxifen therapy.; Breast Cancer Res Treat, 116: 303-9 |
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GSE12093 |
| Zhang, Yi et al. (2023) T-cell infiltration in the central nervous system and their association with brain calcification inSlc20a2-deficient mice.; Front Mol Neurosci, 16: 1073723 |
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GSE218335 |
| Zhang, Ying et al. (2012) USP44 regulates centrosome positioning to prevent aneuploidy and suppress tumorigenesis.; J Clin Invest, 122: 4362-74 |
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GSE40791 |
| Zhang, Yining et al. (2023) Transcriptomic analyses reveal proinflammatory activation of human brain microvascular endothelial cells by aging-associated peptide medin and reversal by nanoliposomes.; Sci Rep, 13: 18802 |
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GSE235915 |
| Zhang, Yiru et al. (2020) MET Inhibition Elicits PGC1α-Dependent Metabolic Reprogramming in Glioblastoma.; Cancer Res, 80: 30-43 |
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GSE134676 |
| Zhang, Yong et al. (2018) Chronic Oxycodone Self-administration Altered Reward-related Genes in the Ventral and Dorsal Striatum of C57BL/6J Mice: An RNA-seq Analysis.; Neuroscience, 393: 333-349 |
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GSE113948 |