List of all 21,870 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Wang, Zuocheng et al. (2013) TIMP2 and TIMP3 have divergent roles in early renal tubulointerstitial injury.; Kidney Int, [no vol.]: [no pages] |
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GSE42303 |
| Wangzhou, Andi et al. (2020) Pharmacological target-focused transcriptomic analysis of native vs cultured human and mouse dorsal root ganglia.; Pain, 161: 1497-1517 |
|
GSE140964 |
| Wani, Abubakar et al. (2021) Neuronal VCP loss of function recapitulates FTLD-TDP pathology.; Cell Rep, 36: 109399 |
|
GSE178257 |
| Wani, Gulzar A et al. (2022) Metabolic control of adult neural stem cell self-renewal by the mitochondrial protease YME1L.; Cell Rep, 38: 110370 |
|
GSE193551 |
| Wapinski, Orly L et al. (2013) Hierarchical mechanisms for direct reprogramming of fibroblasts to neurons.; Cell, 155: 621-35 |
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GSE43916.1 |
| Ward, Marc A et al. (2016) Insights into the pathogenesis of ulcerative colitis from a murine model of stasis-induced dysbiosis, colonic metaplasia, and genetic susceptibility.; Am J Physiol Gastrointest Liver Physiol, 310: G973-88 |
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GSE71997 |
| Ward, Thomas R et al. (2025) Cell-type specific global reprogramming of the transcriptome and epigenome in induced neurons with the 16p11.2 neuropsychiatric CNVs.; Eur J Hum Genet, 33: 1698-1707 |
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GSE133615 |
| Wardell, Suzanne E et al. (2012) Research resource: Transcriptional profiling in a cellular model of breast cancer reveals functional and mechanistic differences between clinically relevant SERM and between SERM/estrogen complexes.; Mol Endocrinol, 26: 1235-48 |
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GSE35428 |
| Warden, Anna S et al. (2020) Microglia Control Escalation of Drinking in Alcohol-Dependent Mice: Genomic and Synaptic Drivers.; Biol Psychiatry, 88: 910-921 |
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GSE142571 |
| Warden, Anna S et al. (2021) Microglia depletion and alcohol: Transcriptome and behavioral profiles.; Addict Biol, 26: e12889 |
|
GSE132516 |
| Warden, Anna S et al. (2025) Elevated brain manganese induces motor disease by upregulating the kynurenine pathway of tryptophan metabolism.; Proc Natl Acad Sci U S A, 122: e2423628122 |
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GSE292533 |
| Wardman, Jonathan H et al. (2023) Modelling idiopathic intracranial hypertension in rats: contributions of high fat diet and testosterone to intracranial pressure and cerebrospinal fluid production.; Fluids Barriers CNS, 20: 44 |
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GSE223582 |
| Wardman, Jonathan H et al. (2024) CSF hyperdynamics in rats mimicking the obesity and androgen excess characteristic of patients with idiopathic intracranial hypertension.; Fluids Barriers CNS, 21: 10 |
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GSE232814 |
| Warnatz, Hans-Jörg et al. (2011) The BTB and CNC homology 1 (BACH1) target genes are involved in the oxidative stress response and in control of the cell cycle.; J Biol Chem, 286: 23521-32 |
|
GSE28050 |
| Warner-Schmidt, Jennifer et al. (2024) Methylone is a rapid-acting neuroplastogen with less off-target activity than MDMA.; Front Neurosci, 18: 1353131 |
|
GSE253280 |
| Warren, Brandon L et al. (2013) Neurobiological sequelae of witnessing stressful events in adult mice.; Biol Psychiatry, 73: 7-14 |
|
GSE36005 |
| Warren, Gordon L et al. (2007) Mechanisms of skeletal muscle injury and repair revealed by gene expression studies in mouse models.; J Physiol, 582: 825-41 |
|
GSE5413 |
| Warren, H Shaw et al. (2009) A genomic score prognostic of outcome in trauma patients.; Mol Med, 15: 220-7 |
|
GSE11375 |
| Warren, Luigi et al. (2010) Highly efficient reprogramming to pluripotency and directed differentiation of human cells with synthetic modified mRNA.; Cell Stem Cell, 7: 618-30 |
|
GSE23583 |
| Warren, Timothy A et al. (2016) Expression profiling of cutaneous squamous cell carcinoma with perineural invasion implicates the p53 pathway in the process.; Sci Rep, 6: 34081 |
|
GSE86544 |
| Wartman, Lukas D et al. (2012) Expression and function of PML-RARA in the hematopoietic progenitor cells of Ctsg-PML-RARA mice.; PLoS One, 7: e46529 |
|
GSE40022 |
| Warwick, Timothy et al. (2021) A hierarchical regulatory network analysis of the vitamin D induced transcriptome reveals novel regulators and complete VDR dependency in monocytes.; Sci Rep, 11: 6518 |
|
GSE69284 GSE119551 |
| Waschek, James A et al. (2017) PACAP Promotes Matrix-Driven Adhesion of Cultured Adult Murine Neural Progenitors.; ASN Neuro, 9: 1759091417708720 |
|
GSE66193 |
| Waseem, Sahar et al. (2021) Protein Arginine Methyltransferase 1 Is Essential for the Meiosis of Male Germ Cells.; Int J Mol Sci, 22: [no pages] |
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GSE176443 |
| Washer, Sam J et al. (2022) Functional characterization of the schizophrenia associated gene AS3MT identifies a role in neuronal development.; Am J Med Genet B Neuropsychiatr Genet, 189: 151-162 |
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GSE182157 |
| Wasserman, Emily et al. (2021) Human Rhinovirus Infection of the Respiratory Tract Affects Sphingolipid Synthesis.; Am J Respir Cell Mol Biol, [no vol.]: [no pages] |
|
GSE189056 |
| Wassouf, Zinah et al. (2018) Distinct Stress Response and Altered Striatal Transcriptome in Alpha-Synuclein Overexpressing Mice.; Front Neurosci, 12: 1033 |
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GSE116010 GSE116009 |
| Wassouf, Zinah et al. (2018) Environmental Enrichment Prevents Transcriptional Disturbances Induced by Alpha-Synuclein Overexpression.; Front Cell Neurosci, 12: 112 |
|
GSE96961 |
| Wasén, Caroline et al. (2024) Bacteroidota inhibit microglia clearance of amyloid-beta and promote plaque deposition in Alzheimer's disease mouse models.; Nat Commun, 15: 3872 |
|
GSE215438 |
| Watanabe, Hiroshi et al. (2008) Prediction of lymphatic metastasis based on gene expression profile analysis after brachytherapy for early-stage oral tongue carcinoma.; Radiother Oncol, 87: 237-42 |
|
GSE4676 |
| Watanabe, Hirotaka et al. (2023) Astrocytic APOE4 genotype-mediated negative impacts on synaptic architecture in human pluripotent stem cell model.; Stem Cell Reports, 18: 1854-1869 |
|
GSE206314 |
| Watanabe, Jun et al. (2024) BET bromodomain inhibition potentiates radiosensitivity in models of H3K27-altered diffuse midline glioma.; J Clin Invest, 134: [no pages] |
|
GSE236598 |
| Watanabe, Kazuhide et al. (2018) Combinatorial perturbation analysis reveals divergent regulations of mesenchymal genes during epithelial-to-mesenchymal transition.; NPJ Syst Biol Appl, 5: 21 |
|
GSE124843 |
| Watanabe, Mahiro et al. (2024) Differences in the characteristics and functions of brain and spinal cord regulatory T cells.; J Neuroinflammation, 21: 146 |
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GSE252641 GSE252368 |
| Watanabe, Momoko et al. (2017) Self-Organized Cerebral Organoids with Human-Specific Features Predict Effective Drugs to Combat Zika Virus Infection.; Cell Rep, 21: 517-532 |
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GSE97919 GSE97872 |
| Watanabe, Momoko et al. (2022) TGFβ superfamily signaling regulates the state of human stem cell pluripotency and capacity to create well-structured telencephalic organoids.; Stem Cell Reports, 17: 2220-2238 |
|
GSE140057 |
| Watanabe, Nobumasa et al. (2025) Tissue degrading and remodelling molecules in giant cell arteritis.; Rheumatology (Oxford), 64: 3095-3103 |
|
GSE267979 |
| Watanabe, Sho et al. (2019) TP53Mutation by CRISPR System Enhances the Malignant Potential of Colon Cancer.; Mol Cancer Res, 17: 1459-1467 |
|
GSE124349 |
| Watanabe, Tokiko et al. (2013) 1918 Influenza virus hemagglutinin (HA) and the viral RNA polymerase complex enhance viral pathogenicity, but only HA induces aberrant host responses in mice.; J Virol, 87: 5239-54 |
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GSE44595 |
| Watanabe, Toshiaki et al. (2006) Distal colorectal cancers with microsatellite instability (MSI) display distinct gene expression profiles that are different from proximal MSI cancers.; Cancer Res, 66: 9804-8 |
|
GSE4554 |
| Watanabe, Toshiaki et al. (2006) Prediction of sensitivity of rectal cancer cells in response to preoperative radiotherapy by DNA microarray analysis of gene expression profiles.; Cancer Res, 66: 3370-4 |
|
GSE3493 |
| Watanabe, Toshiaki et al. (2007) Gene expression signature and the prediction of ulcerative colitis-associated colorectal cancer by DNA microarray.; Clin Cancer Res, 13: 415-20 |
|
GSE3629 |
| Watanabe, Toshiaki et al. (2009) Gene expression signature for recurrence in stage III colorectal cancers.; Cancer, 115: 283-92 |
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GSE4526 |
| Watanabe, Toshiaki et al. (2011) Gene expression signature and response to the use of leucovorin, fluorouracil and oxaliplatin in colorectal cancer patients.; Clin Transl Oncol, 13: 419-25 |
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GSE14095 |
| Watanabe, Toshiaki et al. (2012) Chromosomal instability (CIN) phenotype, CIN high or CIN low, predicts survival for colorectal cancer.; J Clin Oncol, 30: 2256-64 |
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GSE30540 GSE34489 |
| Watanabe, Yasuaki et al. (2025) ALS-associated RNA-binding proteins promote UNC13A transcription through REST downregulation.; EMBO J, 44: 4745-4771 |
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GSE292352 |
| Watanuki, Shintaro et al. (2024) Context-dependent modification of PFKFB3 in hematopoietic stem cells promotes anaerobic glycolysis and ensures stress hematopoiesis.; Elife, 12: [no pages] |
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GSE260765 |
| Waterhouse, Mark et al. (2025) CHD8 interacts with BCL11A to induce oncogenic transcription in triple negative breast cancer.; EMBO J, 44: 3448-3467 |
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GSE174186 |
| Waterman, Claire L et al. (2010) An integrated functional genomic study of acute phenobarbital exposure in the rat.; BMC Genomics, 11: 9 |
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GSE18753 |
| Waters, Jennifer A et al. (2024) Omental preadipocytes stimulate matrix remodeling and IGF signaling to support ovarian cancer metastasis.; Cancer Res, [no vol.]: [no pages] |
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GSE262869 |
| Waters, Katrina M et al. (2009) Cellular dichotomy between anchorage-independent growth responses to bFGF and TPA reflects molecular switch in commitment to carcinogenesis.; Mol Carcinog, 48: 1059-69 |
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GSE13979 |
| Waters, Katrina M et al. (2009) Macrophage responses to silica nanoparticles are highly conserved across particle sizes.; Toxicol Sci, 107: 553-69 |
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GSE13005 |
| Waters, Katrina M et al. (2013) Annexin A2 modulates radiation-sensitive transcriptional programming and cell fate.; Radiat Res, 179: 53-61 |
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GSE42547 |
| Waters, Katrina M et al. (2014) ERK oscillation-dependent gene expression patterns and deregulation by stress response.; Chem Res Toxicol, 27: 1496-503 |
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GSE55823 |
| Watford, Wendy T et al. (2008) Tpl2 kinase regulates T cell interferon-gamma production and host resistance to Toxoplasma gondii.; J Exp Med, 205: 2803-12 |
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GSE12839 |
| Watkins, A James et al. (2012) An integrated genomic and expression analysis of 7q deletion in splenic marginal zone lymphoma.; PLoS One, 7: e44997 |
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GSE35426 GSE35348 |
| Watkins, Trent A et al. (2013) DLK initiates a transcriptional program that couples apoptotic and regenerative responses to axonal injury.; Proc Natl Acad Sci U S A, 110: 4039-44 |
|
GSE96053 |
| Watson, Carolin K et al. (2023) Antifibrotic Drug Nintedanib Inhibits CSF1R to Promote IL-4-associated Tissue Repair Macrophages.; Am J Respir Cell Mol Biol, 68: 366-380 |
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GSE181472 |
| Watson, Dionysios C et al. (2023) GAP43-dependent mitochondria transfer from astrocytes enhances glioblastoma tumorigenicity.; Nat Cancer, 4: 648-664 |
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GSE183004 |
| Watts, Deepika et al. (2025) Hypoxia inducible factor 1α-driven steroidogenesis impacts systemic hematopoiesis.; Cell Mol Biol Lett, 30: 101 |
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GSE292877 |
| Waugh, Katherine A et al. (2023) Triplication of the interferon receptor locus contributes to hallmarks of Down syndrome in a mouse model.; Nat Genet, 55: 1034-1047 |
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GSE218885 GSE218887 |
| Waugh, Sean et al. (2025) Time-course transcriptomics reveals the impact ofTreponema pallidumon microvascular endothelial cell function and phenotype.; Front Microbiol, 16: 1649738 |
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GSE281329 |
| Wayne, Charlotte R et al. (2023) Distinct Th17 effector cytokines differentially promote microglial and blood-brain barrier inflammatory responses during post-infectious encephalitis.; bioRxiv, [no vol.]: [no pages] |
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GSE221715 |
| Wazny, Vanessa Kristina et al. (2025) Chronic cerebral hypoperfusion induces venous dysfunction via EPAS1 regulation in mice.; Nat Commun, 16: 6302 |
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GSE263191 |
| Weaver, Samantha R et al. (2025) Global but not myeloid lineage-directed Girk3 deletion increases bone mass in female mice.; JBMR Plus, 9: ziaf133 |
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GSE296172 |
| Webb, Joe L et al. (2020) Whole egg consumption increases gene expression within the glutathione pathway in the liver of Zucker Diabetic Fatty rats.; PLoS One, 15: e0240885 |
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GSE157491 |
| Weber, André A et al. (2024) Triclosan administration to humanized UDP-glucuronosyltransferase 1 neonatal mice induces UGT1A1 through a dependence on PPARα and ATF4.; J Biol Chem, 300: 107340 |
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GSE264293 |
| Weber, Callie M et al. (2023) Angiotensin II Increases Oxidative Stress and Inflammation in Female, But Not Male, Endothelial Cells.; Cell Mol Bioeng, 16: 127-141 |
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GSE211978 |
| Weber, Ceri J et al. (2025) Cellular and genetic mechanisms that shape the development and evolution of tail vertebral proportion in mice and jerboas.; Nat Commun, 16: 9014 |
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GSE299515 |
| Weber, Marlen et al. (2015) Alternative generation of CNS neural stem cells and PNS derivatives from neural crest-derived peripheral stem cells.; Stem Cells, 33: 574-88 |
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GSE57001 GSE56999 |
| Weber, Martina et al. (2012) Hepatic induction of cholesterol biosynthesis reflects a remote adaptive response to pneumococcal pneumonia.; FASEB J, 26: 2424-36 |
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GSE26472 |
| Weber, Michael D et al. (2019) The Influence of Microglial Elimination and Repopulation on Stress Sensitization Induced by Repeated Social Defeat.; Biol Psychiatry, 85: 667-678 |
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GSE124169 |
| Weber, Peter et al. (2022) Therapy-Related Transcriptional Subtypes in Matched Primary and Recurrent Head and Neck Cancer.; Clin Cancer Res, 28: 1038-1052 |
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GSE205308 |
| Weber, Rebecca Z et al. (2021) Molecular and anatomical roadmap of stroke pathology in immunodeficient mice.; Front Immunol, 13: 1080482 |
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GSE208605 |
| Webster, Dan E et al. (2014) Enhancer-targeted genome editing selectively blocks innate resistance to oncokinase inhibition.; Genome Res, 24: 751-60 |
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GSE50649 |
| Webster, Jennifer A et al. (2009) Genetic control of human brain transcript expression in Alzheimer disease.; Am J Hum Genet, 84: 445-58 |
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GSE15222 |
| Wedge, Marie-Eve et al. (2022) Virally programmed extracellular vesicles sensitize cancer cells to oncolytic virus and small molecule therapy.; Nat Commun, 13: 1898 |
|
GSE189281 |
| Weeks, Adrienne et al. (2016) Epithelial Cell Transforming 2 and Aurora Kinase B Modulate Formation of Stress Granule-Containing Transcripts from Diverse Cellular Pathways in Astrocytoma Cells.; Am J Pathol, 186: 1674-87 |
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GSE76814 |
| Wefers, Benedikt et al. (2012) MAPK signaling determines anxiety in the juvenile mouse brain but depression-like behavior in adults.; PLoS One, 7: e35035 |
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GSE33618 |
| Weger, Benjamin D et al. (2019) The Mouse Microbiome Is Required for Sex-Specific Diurnal Rhythms of Gene Expression and Metabolism.; Cell Metab, 29: 362-382.e8 |
|
GSE114402 |
| Weger, Benjamin D et al. (2021) Systematic analysis of differential rhythmic liver gene expression mediated by the circadian clock and feeding rhythms.; Proc Natl Acad Sci U S A, 118: [no pages] |
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GSE135898 |
| Weger, Meltem et al. (2020) Mitochondrial gene signature in the prefrontal cortex for differential susceptibility to chronic stress.; Sci Rep, 10: 18308 |
|
GSE148629 |
| Wegner, Stephanie et al. (2019) Endothelial Cell-Specific Transcriptome Reveals Signature of Chronic Stress Related to Worse Outcome After Mild Transient Brain Ischemia in Mice.; Mol Neurobiol, [no vol.]: [no pages] |
|
GSE122345 |
| Wegscheid, Michelle L et al. (2021) Patient-derived iPSC-cerebral organoid modeling of the 17q11.2 microdeletion syndrome establishes CRLF3 as a critical regulator of neurogenesis.; Cell Rep, 36: 109315 |
|
GSE166080 |
| Wehmas, Leah C et al. (2018) Demodifying RNA for Transcriptomic Analyses of Archival Formalin-Fixed Paraffin-Embedded Samples.; Toxicol Sci, 162: 535-547 |
|
GSE103440 |
| Wei, Christina et al. (2018) Correction of GSK3β at young age prevents muscle pathology in mice with myotonic dystrophy type 1.; FASEB J, 32: 2073-2085 |
|
GSE85396 |
| Wei, Chunling et al. (2021) RNA Biological Characteristics at the Peak of Cell Death in Different Hereditary Retinal Degeneration Mutants.; Front Genet, 12: 728791 |
|
GSE178928 |
| Wei, Gang et al. (2011) Genome-wide analyses of transcription factor GATA3-mediated gene regulation in distinct T cell types.; Immunity, 35: 299-311 |
|
GSE20898 |
| Wei, Guo et al. (2006) Gene expression-based chemical genomics identifies rapamycin as a modulator of MCL1 and glucocorticoid resistance.; Cancer Cell, 10: 331-42 |
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GSE5820 GSE5824 |
| Wei, Haichao et al. (2021) Systematic analysis of purified astrocytes after SCI unveils Zeb2os function during astrogliosis.; Cell Rep, 34: 108721 |
|
GSE153720 |
| Wei, Hongyan et al. (2017) Impact of chronic unpredicted mild stress-induced depression on repaglinide fate via glucocorticoid signaling pathway.; Oncotarget, 8: 44351-44365 |
|
GSE94988 |