List of all 21,851 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Yan, Hao et al. (2024) Programmed RNA editing with an evolved bacterial adenosine deaminase.; Nat Chem Biol, 20: 1361-1370 |
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GSE208401 |
| Yan, Lei et al. (2024) Galactin-3 regulation of CDC42 promotes neuronal autophagy following spinal cord injury.; Front Cell Neurosci, 19: 1622825 |
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GSE274319 |
| Yan, Liying et al. (2013) Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells.; Nat Struct Mol Biol, 20: 1131-9 |
|
GSE36552 |
| Yan, Liying et al. (2016) Epigenomic Landscape of Human Fetal Brain, Heart, and Liver.; J Biol Chem, 291: 4386-98 |
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GSE63634 |
| Yan, Qian et al. (2023) Transcriptomic reveals the ferroptosis features of host response in a mouse model of Zika virus infection.; J Med Virol, 95: e28386 |
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GSE213898 |
| Yan, Qinghong et al. (2015) Systematic discovery of regulated and conserved alternative exons in the mammalian brain reveals NMD modulating chromatin regulators.; Proc Natl Acad Sci U S A, 112: 3445-50 |
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SRP055008 |
| Yan, Shun et al. (2020) CHD7 regulates cardiovascular development through ATP-dependent and -independent activities.; Proc Natl Acad Sci U S A, 117: 28847-28858 |
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GSE149860 |
| Yan, Wei et al. (2025) Human stem cell-derived A10 dopaminergic neurons specifically integrate into mouse circuits and improve depression-like behaviors.; Cell Stem Cell, 32: 1457-1474.e7 |
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GSE213212 |
| Yan, Weixing et al. (2026) Aurka-Bhlhe41 axis prevents premature aging-like microglial dysfunction and promotes remyelination.; Nat Commun, 17: [no pages] |
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GSE276929 |
| Yan, Wenjun et al. (2020) Mouse Retinal Cell Atlas: Molecular Identification of over Sixty Amacrine Cell Types.; J Neurosci, 40: 5177-5195 |
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GSE149715 |
| Yan, Wusheng et al. (2012) Identification of unique expression signatures and therapeutic targets in esophageal squamous cell carcinoma.; BMC Res Notes, 5: 73 |
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GSE29001 |
| Yan, Wusheng et al. (2013) Three-dimensional mRNA measurements reveal minimal regional heterogeneity in esophageal squamous cell carcinoma.; Am J Pathol, 182: 529-39 |
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GSE33426 |
| Yan, Xiaohe et al. (2014) Peroxidasin is essential for eye development in the mouse.; Hum Mol Genet, 23: 5597-614 |
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GSE49704 |
| Yan, Xiaoxiang et al. (2017) Dectin-2 Deficiency Modulates Th1 Differentiation and Improves Wound Healing After Myocardial Infarction.; Circ Res, 120: 1116-1129 |
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GSE88924 |
| Yan, Xiaoxu et al. (2025) Microbial infection instigates tau-related pathology in Alzheimer's disease via activating neuroimmune cGAS-STING pathway.; Neuroscience, 572: 122-133 |
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GSE229411 GSE264504 |
| Yan, Xiting et al. (2015) Noninvasive analysis of the sputum transcriptome discriminates clinical phenotypes of asthma.; Am J Respir Crit Care Med, 191: 1116-25 |
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GSE56396 |
| Yan, Ying et al. (2022) Hepatic thyroid hormone signalling modulates glucose homeostasis through the regulation of GLP-1 production via bile acid-mediated FXR antagonism.; Nat Commun, 13: 6408 |
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GSE184261 |
| Yan, Yiqing et al. (2021) Interleukin-6 produced by enteric neurons regulates the number and phenotype of microbe-responsive regulatory T cells in the gut.; Immunity, 54: 499-513.e5 |
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GSE164575 |
| Yan, Yuyang et al. (2024) Macrophages excite muscle spindles with glutamate to bolster locomotion.; Nature, 637: 698-707 |
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GSE244351 |
| Yan, Yuze et al. (2022) ASH1L haploinsufficiency results in autistic-like phenotypes in mice and links Eph receptor gene to autism spectrum disorder.; Neuron, [no vol.]: [no pages] |
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GSE184375 GSE173502 |
| Yan, Zhaoqi et al. (2019) Deficiency of Socs3 leads to brain-targeted EAE via enhanced neutrophil activation and ROS production.; JCI Insight, 5: [no pages] |
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GSE122353 |
| Yanagida, Atsuko et al. (2011) Downregulation of the Wnt antagonist Dkk2 links the loss of Sept4 and myofibroblastic transformation of hepatic stellate cells.; Biochim Biophys Acta, 1812: 1403-11 |
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GSE24588 |
| Yanagida, Keisuke et al. (2020) Sphingosine 1-Phosphate Receptor Signaling Establishes AP-1 Gradients to Allow for Retinal Endothelial Cell Specialization.; Dev Cell, 52: 779-793.e7 |
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GSE141440 |
| Yang, Annan et al. (2016) Increased Skin Tumor Incidence and Keratinocyte Hyper-Proliferation in a Mouse Model of Down Syndrome.; PLoS One, 11: e0146570 |
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GSE40382 |
| Yang, Annie et al. (2006) Relationships between p63 binding, DNA sequence, transcription activity, and biological function in human cells.; Mol Cell, 24: 593-602 |
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GSE5993 |
| Yang, Beimeng et al. (2019) NEIL1 stimulates neurogenesis and suppresses neuroinflammation after stress.; Free Radic Biol Med, 141: 47-58 |
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GSE130034 |
| Yang, Beimeng et al. (2021) NAD+supplementation prevents STING-induced senescence in ataxia telangiectasia by improving mitophagy.; Aging Cell, 20: e13329 |
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GSE152286 GSE152287 |
| Yang, Brenda et al. (2025) Murine gut microbiota dysbiosis via enteric infection modulates the foreign body response to a distal biomaterial implant.; Proc Natl Acad Sci U S A, 122: e2422169122 |
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GSE293564 |
| Yang, Cha et al. (2025) TMEM106B deficiency leads to alterations in lipid metabolism and obesity in the TDP-43Q331Kknock-in mouse model.; Commun Biol, 8: 315 |
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GSE287573 |
| Yang, Changrui et al. (2026) A trispecific antibody engaging T cells with tumour and myeloid cells augments antitumour immunity.; Nat Biomed Eng, 10: 732-752 |
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GSE282589 |
| Yang, Cheng et al. (2024) EHMT2-mediated transcriptional reprogramming drives neuroendocrine transformation in non-small cell lung cancer.; Proc Natl Acad Sci U S A, 121: e2317790121 |
|
GSE242843 |
| Yang, Chul Min et al. (2021) p53 expression confers sensitivity to 5-fluorouracil via distinct chromatin accessibility dynamics in human colorectal cancer.; Oncol Lett, 21: 226 |
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GSE157951 |
| Yang, Cliff Y et al. (2011) The transcriptional regulators Id2 and Id3 control the formation of distinct memory CD8+ T cell subsets.; Nat Immunol, 12: 1221-9 |
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GSE32675 |
| Yang, Darwin et al. (2020) Mitigation of Carbon Nanotube Neurosensor Induced Transcriptomic and Morphological Changes in Mouse Microglia with Surface Passivation.; ACS Nano, 14: 13794-13805 |
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GSE153419 |
| Yang, Dianer et al. (2013) Overexpression of vascular endothelial growth factor in the germinal matrix induces neurovascular proteases and intraventricular hemorrhage.; Sci Transl Med, 5: 193ra90 |
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GSE47903 |
| Yang, Eun Jae et al. (2022) Co-inhibition of ATM and ROCK synergistically improves cell proliferation in replicative senescence by activating FOXM1 and E2F1.; Commun Biol, 5: 702 |
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GSE178115 |
| Yang, Fan et al. (2024) An immunosuppressive vascular niche drives macrophage polarization and immunotherapy resistance in glioblastoma.; Sci Adv, 10: eadj4678 |
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GSE221950 |
| Yang, Feng et al. (2021) p113 isoform encoded by CUX1 circular RNA drives tumor progression via facilitating ZRF1/BRD4 transactivation.; Mol Cancer, 20: 123 |
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GSE182329 |
| Yang, Guang et al. (2014) An eIF4E1/4E-T complex determines the genesis of neurons from precursors by translationally repressing a proneurogenic transcription program.; Neuron, 84: 723-39 |
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GSE61729 |
| Yang, Guang et al. (2016) A Glo1-Methylglyoxal Pathway that Is Perturbed in Maternal Diabetes Regulates Embryonic and Adult Neural Stem Cell Pools in Murine Offspring.; Cell Rep, 17: 1022-1036 |
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GSE79737 |
| Yang, Guangrui et al. (2016) Timing of expression of the core clock gene Bmal1 influences its effects on aging and survival.; Sci Transl Med, 8: 324ra16 |
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GSE70499 GSE70497 |
| Yang, Haimei et al. (2024) Transplantation of Wnt5a-modified Bone Marrow Mesenchymal Stem Cells Promotes Recovery After Spinal Cord Injury via the PI3K/AKT Pathway.; Mol Neurobiol, 61: 10830-10844 |
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GSE296458 |
| Yang, Hansen et al. (2021) RNA-Seq analysis reveals critical transcriptome changes caused by sodium butyrate in DN mouse models.; Biosci Rep, 41: [no pages] |
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GSE151325 |
| Yang, Haojun et al. (2024) Remodelling of the translatome controls diet and its impact on tumorigenesis.; Nature, 633: 189-197 |
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GSE232342 |
| Yang, Hongtian et al. (2019) Transcriptome profiling of brain myeloid cells revealed activation of Itgal, Trem1, and Spp1 in western diet-induced obesity.; J Neuroinflammation, 16: 169 |
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GSE133814 |
| Yang, Hui et al. (2021) CPVL promotes glioma progression via STAT1 pathway inhibition through interactions with the BTK/p300 axis.; JCI Insight, 6: [no pages] |
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GSE188256 |
| Yang, Huijie et al. (2025) Oxytocin Receptor Regulates the Hippo/YAP Axis to Drive Hepatocarcinogenesis.; Cancer Res, 85: 3752-3770 |
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GSE266229 GSE249404 |
| Yang, Huiming et al. (2020) Truncation of mutant huntingtin in knock-in mice demonstrates exon1 huntingtin is a key pathogenic form.; Nat Commun, 11: 2582 |
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GSE145879 |
| Yang, Huiya et al. (2023) Rescue of GM3 synthase deficiency by spatially controlled, rAAV-mediated ST3GAL5 delivery.; JCI Insight, 8: [no pages] |
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GSE201587 |
| Yang, Ivana V et al. (2012) The peripheral blood transcriptome identifies the presence and extent of disease in idiopathic pulmonary fibrosis.; PLoS One, 7: e37708 |
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GSE33566 |
| Yang, Jason et al. (2025) Polyglycine-mediated aggregation of FAM98B disrupts tRNA processing in GGC repeat disorders.; Science, 389: eado2403 |
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GSE246377 |
| Yang, Jee Myung et al. (2020) Dll4 Suppresses Transcytosis for Arterial Blood-Retinal Barrier Homeostasis.; Circ Res, 126: 767-783 |
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GSE142671 |
| Yang, Jennifer A et al. (2017) The Arcuate Estrogen-Regulated Transcriptome: Estrogen Response Element-Dependent and -Independent Signaling of ERα in Female Mice.; Endocrinology, 158: 612-626 |
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GSE86609 |
| Yang, Jia-Yao et al. (2025) GFAT1 promotes the progression of hepatocellular carcinoma via enhancing the O-GlcNAcylation of VEZF1.; Cell Death Dis, 16: 647 |
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GSE278334 |
| Yang, Jianjing et al. (2024) SOXC Enhances NGN2-Mediated Reprogramming of Glioblastoma Cells Into Neuron-Like Cells by Modulating RhoA and RAC1/CDC42 Pathway Activity.; CNS Neurosci Ther, 30: e70075 |
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GSE112648 |
| Yang, Jie et al. (2017) Chronic nicotine differentially affects murine transcriptome profiling in isolated cortical interneurons and pyramidal neurons.; BMC Genomics, 18: 194 |
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GSE89899 |
| Yang, Jie et al. (2019) Age- and Nicotine-Associated Gene Expression Changes in the Hippocampus of APP/PS1 Mice.; J Mol Neurosci, 69: 608-622 |
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GSE86828 |
| Yang, Jing et al. (2024) Maternal immune activation upregulates the AU020206-IRFs-STAT1 axis in modulating cytokine production in the brain.; Theranostics, 14: 5682-5697 |
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GSE233424 |
| Yang, Jing et al. (2025) STK11 coordinates IL-4 signaling with metabolic reprogramming to control M2 macrophage polarization and antitumor immunity.; Sci Adv, 11: eadx5495 |
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GSE228251 |
| Yang, Jinshou et al. (2023) Epigenetic reprogramming-induced guanidinoacetic acid synthesis promotes pancreatic cancer metastasis and transcription-activating histone modifications.; J Exp Clin Cancer Res, 42: 155 |
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GSE193268 |
| Yang, Ju et al. (2025) Prickle4 Drives Microenvironmental Remodeling and Resistance to Parp Inhibition in IDH-Mutant Glioma.; Adv Sci (Weinh), 13: e03866 |
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GSE249818 |
| Yang, Ju-Hee et al. (2023) Delta (B1.617.2) variant of SARS-CoV-2 induces severe neurotropic patterns in K18-hACE2 mice.; Sci Rep, 13: 3303 |
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GSE214516 |
| Yang, Juan et al. (2020) Sirt6 promotes tumorigenesis and drug resistance of diffuse large B-cell lymphoma by mediating PI3K/Akt signaling.; J Exp Clin Cancer Res, 39: 142 |
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GSE135914 |
| Yang, Jun et al. (2015) The role of histone demethylase KDM4B in Myc signaling in neuroblastoma.; J Natl Cancer Inst, 107: djv080 |
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GSE45967 |
| Yang, Jun et al. (2025) Creatine mitigates neurogenesis impairment caused by defective DcpS decapping.; Sci Rep, 15: 17915 |
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GSE274722 |
| Yang, Jun-Qi et al. (2025) Genetic and epigenetic regulation of Treg cell fitness by autism-related chromatin remodeler CHD8.; Cell Mol Biol Lett, 30: 36 |
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GSE279810 |
| Yang, Kai et al. (2013) T cell exit from quiescence and differentiation into Th2 cells depend on Raptor-mTORC1-mediated metabolic reprogramming.; Immunity, 39: 1043-56 |
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GSE51668 |
| Yang, Kai-Chien et al. (2012) Combined deep microRNA and mRNA sequencing identifies protective transcriptomal signature of enhanced PI3K? signaling in cardiac hypertrophy.; J Mol Cell Cardiol, 53: 101-12 |
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GSE35350 |
| Yang, Kai-Chien et al. (2014) Deep RNA sequencing reveals dynamic regulation of myocardial noncoding RNAs in failing human heart and remodeling with mechanical circulatory support.; Circulation, 129: 1009-21 |
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GSE46224.2 |
| Yang, Kun et al. (2025) Autonomous STING signaling in Purkinje cells drives neurodegeneration independent of type I interferon.; Cell Rep, 44: 116480 |
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GSE300185 |
| Yang, Li et al. (2011) Genomewide characterization of non-polyadenylated RNAs.; Genome Biol, 12: R16 |
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GSE24399 |
| Yang, Li et al. (2020) Extracellular Vesicle-Mediated Delivery of Circular RNA SCMH1 Promotes Functional Recovery in Rodent and Nonhuman Primate Ischemic Stroke Models.; Circulation, 142: 556-574 |
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GSE135121 |
| Yang, Liang et al. (2025) Stress dynamically modulates neuronal autophagy to gate depression onset.; Nature, [no vol.]: [no pages] |
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GSE287175 |
| Yang, Liang-Yo et al. (2021) Exerting the Appropriate Application of Methylprednisolone in Acute Spinal Cord Injury Based on Time Course Transcriptomics Analysis.; Int J Mol Sci, 22: [no pages] |
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GSE15878 |
| Yang, Lijun et al. (2024) Initial IL-10 production dominates the therapy of mesenchymal stem cell scaffold in spinal cord injury.; Theranostics, 14: 879-891 |
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GSE240755 |
| Yang, Linlin et al. (2016) Covariation Analysis of Serumal and Urinary Metabolites Suggests Aberrant Glycine and Fatty Acid Metabolism in Chronic Hepatitis B.; PLoS One, 11: e0156166 |
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GSE58208 |
| Yang, Liqin et al. (2022) Retinoic Acid Supplementation Rescues the Social Deficits inFmr1Knockout Mice.; Front Genet, 13: 928393 |
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GSE201672 |
| Yang, Liuliu et al. (2024) SARS-CoV-2 infection causes dopaminergic neuron senescence.; Cell Stem Cell, 31: 196-211.e6 |
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GSE174745.2 |
| Yang, Lu et al. (2011) Inflammatory gene expression in OVE26 diabetic kidney during the development of nephropathy.; Nephron Exp Nephrol, 119: e8-20 |
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GSE20636 |
| Yang, Lu et al. (2025) WDR5 serves in co-activation and influences genome targeting of KLF3.; Nucleic Acids Res, 53: [no pages] |
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GSE199657 |
| Yang, Meng et al. (2024) Antibiotic-Induced Gut Microbiota Dysbiosis Modulates Host Transcriptome and m6A Epitranscriptome via Bile Acid Metabolism.; Adv Sci (Weinh), 11: e2307981 |
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GSE216620 |
| Yang, Ming et al. (2021) Inhibition of mitochondrial function by metformin increases glucose uptake, glycolysis and GDF-15 release from intestinal cells.; Sci Rep, 11: 2529 |
|
GSE165122 |
| Yang, Mu et al. (2026) KIF11 prevents retinal endothelial ferroptosis in familial exudative vitreoretinopathy by inhibiting phosphorylation-driven PRDX1 phase separation.; Nat Commun, 17: [no pages] |
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GSE306946 |
| Yang, Muh-Hwa et al. (2010) Bmi1 is essential in Twist1-induced epithelial-mesenchymal transition.; Nat Cell Biol, 12: 982-92 |
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GSE19406 |
| Yang, Nan et al. (2013) Generation of oligodendroglial cells by direct lineage conversion.; Nat Biotechnol, 31: 434-9 |
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GSE40421 |
| Yang, Nicole J et al. (2022) Anthrax toxins regulate pain signaling and can deliver molecular cargoes into ANTXR2+DRG sensory neurons.; Nat Neurosci, 25: 168-179 |
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GSE184619 |
| Yang, Ning et al. (2023) Galectin-1-dependent ceRNA network in HRMECs revealed its association with retinal neovascularization.; BMC Genomics, 24: 327 |
|
GSE221037 |
| Yang, Peiwei et al. (2024) CAR T cells secreting NGF-neutralizing scFv enhance efficacy in clear cell renal cell carcinoma by relieving immunosuppression through immunosympathectomy.; J Immunother Cancer, 12: [no pages] |
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GSE279393 |
| Yang, Ping et al. (2004) DNA microarray analysis of gene expression in human optic nerve head astrocytes in response to hydrostatic pressure.; Physiol Genomics, 17: 157-69 |
|
GSE758 |
| Yang, Pinglian et al. (2026) SLC1A5 prevents aortic aneurysm and dissection by glutaminolytic-epigenetic orchestration of vascular smooth muscle cell homeostasis.; Nat Commun, [no vol.]: [no pages] |
|
GSE309259 |
| Yang, Qi et al. (2011) E47 regulates hematopoietic stem cell proliferation and energetics but not myeloid lineage restriction.; Blood, 117: 3529-38 |
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GSE26788 |
| Yang, Qianlan et al. (2024) LATS1/2 loss promote tumor immune evasion in endometrial cancer through downregulating MHC-I expression.; J Exp Clin Cancer Res, 43: 54 |
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GSE241847 |
| Yang, Qing et al. (2023) Epigenetic and transcriptional landscapes during cerebral cortex development in a microcephaly mouse model.; J Genet Genomics, [no vol.]: [no pages] |
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GSE215228.1 |
| Yang, Rui et al. (2025) Glutamate dehydrogenase 1-catalytic glutaminolysis feedback activates EGFR/PI3K/AKT pathway and reprograms glioblastoma metabolism.; Neuro Oncol, 27: 668-681 |
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GSE268158 |
| Yang, Ruojing et al. (2007) Liver-specific knockdown of JNK1 up-regulates proliferator-activated receptor gamma coactivator 1 beta and increases plasma triglyceride despite reduced glucose and insulin levels in diet-induced obese mice.; J Biol Chem, 282: 22765-74 |
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GSE7648 |