List of all 21,851 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Yang, S et al. (2007) Biochemical, molecular and behavioral phenotypes of Rab3A mutations in the mouse.; Genes Brain Behav, 6: 77-96 |
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GSE6527.1 GSE6527.2 |
| Yang, Scarlett Y et al. (2023) FBXW7β isoform drives transcriptional activation of the proinflammatory TNF cluster in human pro-B cells.; Blood Adv, 7: 1077-1091 |
|
GSE212312 |
| Yang, Shouhui et al. (2022) Dysregulation of HNF1B/Clusterin axis enhances disease progression in a highly aggressive subset of pancreatic cancer patients.; Carcinogenesis, 43: 1198-1210 |
|
GSE183795 |
| Yang, Shuzhang et al. (2007) Genome-wide expression profiling and bioinformatics analysis of diurnally regulated genes in the mouse prefrontal cortex.; Genome Biol, 8: R247 |
|
GSE9471 |
| Yang, Shuzhang et al. (2009) Genomic landscape of a three-generation pedigree segregating affective disorder.; PLoS One, 4: e4474 |
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GSE11767 |
| Yang, Siyoung et al. (2015) Immune tolerance. Regulatory T cells generated early in life play a distinct role in maintaining self-tolerance.; Science, 348: 589-94 |
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GSE66332 |
| Yang, Su et al. (2018) Shortening the Half-Life of Cas9 Maintains Its Gene Editing Ability and Reduces Neuronal Toxicity.; Cell Rep, 25: 2653-2659.e3 |
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GSE122072 |
| Yang, Su et al. (2020) Lack of RAN-mediated toxicity in Huntington's disease knock-in mice.; Proc Natl Acad Sci U S A, 117: 4411-4417 |
|
GSE142603 |
| Yang, T et al. (2019) Maresin 1 attenuates neuroinflammation in a mouse model of perioperative neurocognitive disorders.; Br J Anaesth, 122: 350-360 |
|
GSE115440 |
| Yang, Tao et al. (2016) Shifts in the Gut Microbiota Composition Due to Depleted Bone Marrow Beta Adrenergic Signaling Are Associated with Suppressed Inflammatory Transcriptional Networks in the Mouse Colon.; Front Physiol, 8: 220 |
|
GSE71632 |
| Yang, Tianqi et al. (2022) Xist exerts gene-specific silencing during XCI maintenance and impacts lineage-specific cell differentiation and proliferation during hematopoiesis.; Nat Commun, 13: 4464 |
|
GSE184772 |
| Yang, Tianshu et al. (2023) The PRMT6/PARP1/CRL4B Complex Regulates the Circadian Clock and Promotes Breast Tumorigenesis.; Adv Sci (Weinh), 10: e2202737 |
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GSE210948 |
| Yang, Tianyi et al. (2026) Rapid reduction in global chromatin loop size after acute STAG2 reconstitution in human cancer cells.; bioRxiv, [no vol.]: [no pages] |
|
GSE318552 |
| Yang, Ting et al. (2025) hPSC-derived sacral neural crest cells restore erectile function in pelvic ganglia injury.; Stem Cell Res Ther, 16: 593 |
|
GSE299758 |
| Yang, Wenwen et al. (2024) The effect of overexpression of CyPA on gene expression in human umbilical vein endothelial cells.; Medicine (Baltimore), 103: e38886 |
|
GSE227860 |
| Yang, X et al. (2002) Microarray profiling of skeletal muscle tissues from equally obese, non-diabetic insulin-sensitive and insulin-resistant Pima Indians.; Diabetologia, 45: 1584-93 |
|
GSE121 |
| Yang, Xi et al. (2012) Identification of urinary microRNA profiles in rats that may diagnose hepatotoxicity.; Toxicol Sci, 125: 335-44 |
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GSE32891 |
| Yang, Xia et al. (2006) Tissue-specific expression and regulation of sexually dimorphic genes in mice.; Genome Res, 16: 995-1004 |
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GSE3088 GSE3087 |
| Yang, Xiang-Ping et al. (2011) Opposing regulation of the locus encoding IL-17 through direct, reciprocal actions of STAT3 and STAT5.; Nat Immunol, 12: 247-54 |
|
GSE26551 |
| Yang, Xianyuan et al. (2025) Discovery of a Novel Selective and Cell-Active N6-Methyladenosine RNA Demethylase ALKBH5 Inhibitor.; J Med Chem, 68: 4133-4147 |
|
GSE255973 |
| Yang, Xiaojing et al. (2012) Gene reactivation by 5-aza-2'-deoxycytidine-induced demethylation requires SRCAP-mediated H2A.Z insertion to establish nucleosome depleted regions.; PLoS Genet, 8: e1002604 |
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GSE26684 |
| Yang, Xiaoming et al. (2022) Changes of Gene Expression Patterns of Muscle Pathophysiology-Related Transcription Factors During Denervated Muscle Atrophy.; Front Physiol, 13: 923190 |
|
GSE201025 |
| Yang, Xiaoyang et al. (2019) Differentiation of human pluripotent stem cells into neurons or cortical organoids requires transcriptional co-regulation by UTX and 53BP1.; Nat Neurosci, 22: 362-373 |
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GSE120333 |
| Yang, Xiaoyu et al. (2023) Functional characterization of Alzheimer's disease genetic variants in microglia.; Nat Genet, 55: 1735-1744 |
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GSE206478 |
| Yang, Ximing J et al. (2005) A molecular classification of papillary renal cell carcinoma.; Cancer Res, 65: 5628-37 |
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GSE2748 |
| Yang, Xin et al. (2017) 5-methylcytosine promotes mRNA export - NSUN2 as the methyltransferase and ALYREF as an m5C reader.; Cell Res, 27: 606-625 |
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GSE93750.1 GSE93750.2 |
| Yang, Xu et al. (2012) Selective requirement for Mediator MED23 in Ras-active lung cancer.; Proc Natl Acad Sci U S A, 109: E2813-22 |
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GSE40517 |
| Yang, Yaming et al. (2024) The chromodomain protein CDYL confers forebrain identity to human cortical organoids by inhibiting neuronatin.; Cell Rep, 43: 114814 |
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GSE276320.2 GSE247084.2 GSE276320.1 |
| Yang, Yaw-Ching et al. (2003) Hierarchical model of gene regulation by transforming growth factor beta.; Proc Natl Acad Sci U S A, 100: 10269-74 |
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GSE579 |
| Yang, Yawei J et al. (2012) Microcephaly gene links trithorax and REST/NRSF to control neural stem cell proliferation and differentiation.; Cell, 151: 1097-112 |
|
GSE36384 |
| Yang, Yeyoung et al. (2025) Blockade of TLR2 activation in macrophages by self-assembled hyaluronic acid nanoparticles alleviates psoriasis-like skin dermatitis.; Int J Biol Macromol, 323: 147202 |
|
GSE276941 |
| Yang, Yibin et al. (2012) Exploiting synthetic lethality for the therapy of ABC diffuse large B cell lymphoma.; Cancer Cell, 21: 723-37 |
|
GSE32456 |
| Yang, Yijun et al. (2024) Thyroid Hormone Suppresses Medulloblastoma Progression Through Promoting Terminal Differentiation of Tumor Cells.; bioRxiv, [no vol.]: [no pages] |
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GSE224974 |
| Yang, Ying et al. (2023) SAPS3 subunit of protein phosphatase 6 is an AMPK inhibitor and controls metabolic homeostasis upon dietary challenge in male mice.; Nat Commun, 14: 1368 |
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GSE210333 |
| Yang, Yini et al. (2020) The 3D genomic landscape of differential response to EGFR/HER2 inhibition in endocrine-resistant breast cancer cells.; Biochim Biophys Acta Gene Regul Mech, 1863: 194631 |
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GSE144378 |
| Yang, Yongkang et al. (2022) HIF-1 Interacts with TRIM28 and DNA-PK to release paused RNA polymerase II and activate target gene transcription in response to hypoxia.; Nat Commun, 13: 316 |
|
GSE167956 |
| Yang, Yuan et al. (2017) Immunocompetent mouse allograft models for development of therapies to target breast cancer metastasis.; Oncotarget, 8: 30621-30643 |
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GSE69006 |
| Yang, Yue et al. (2016) Chromatin remodeling inactivates activity genes and regulates neural coding.; Science, 353: 300-305 |
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GSE83253 |
| Yang, Yueli et al. (2024) VGLL1 cooperates with TEAD4 to control human trophectoderm lineage specification.; Nat Commun, 15: 583 |
|
GSE241813 |
| Yang, Yueqin et al. (2016) Determination of a Comprehensive Alternative Splicing Regulatory Network and Combinatorial Regulation by Key Factors during the Epithelial-to-Mesenchymal Transition.; Mol Cell Biol, 36: 1704-19 |
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GSE75487 |
| Yang, Yunseon et al. (2022) Adeno-associated virus (AAV) 9-mediated gene delivery of Nurr1 and Foxa2 ameliorates symptoms and pathologies of Alzheimer disease model mice by suppressing neuro-inflammation and glial pathology.; Mol Psychiatry, [no vol.]: [no pages] |
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GSE201106.1 GSE201106.2 |
| Yang, Zhan et al. (2019) Dysregulation of p53-RBM25-mediated circAMOTL1L biogenesis contributes to prostate cancer progression through the circAMOTL1L-miR-193a-5p-Pcdha pathway.; Oncogene, 38: 2516-2532 |
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GSE113179 |
| Yang, Zhao et al. (2024) Structure of GPR101-Gs enables identification of ligands with rejuvenating potential.; Nat Chem Biol, 20: 484-492 |
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GSE241719 |
| Yang, Zhaohui et al. (2017) Stromal hedgehog signaling maintains smooth muscle and hampers micro-invasive prostate cancer.; Dis Model Mech, 10: 39-52 |
|
GSE92301 |
| Yang, Zhengyan et al. (2024) DRD4 promotes chemo-resistance and cancer stem cell-like phenotypes by mediating the activation of the Akt/β-catenin signaling axis in liver cancer.; Br J Cancer, 131: 1212-1223 |
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GSE272591 |
| Yang, Zhi-Hong et al. (2023) Dietary fish oil enriched in very-long-chain polyunsaturated fatty acid reduces cardiometabolic risk factors and improves retinal function.; iScience, 26: 108411 |
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GSE221559 |
| Yang, Zi-Mei et al. (2023) AFF4 globally affects the release of paused RNA polymerase II in HEL cells.; Yi Chuan, 45: 658-668 |
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GSE234617 |
| Yao, Bing et al. (2017) DNA N6-methyladenine is dynamically regulated in the mouse brain following environmental stress.; Nat Commun, 8: 1122 |
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GSE79543 |
| Yao, Changfu et al. (2021) Senescence of Alveolar Type 2 Cells Drives Progressive Pulmonary Fibrosis.; Am J Respir Crit Care Med, 203: 707-717 |
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GSE132909 |
| Yao, Changfu et al. (2023) Maladaptive TGF-β Signals to the Alveolar Epithelium Drive Fibrosis after COVID-19 Infection.; Am J Respir Crit Care Med, 208: 201-204 |
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GSE224955 |
| Yao, Cheng-Cheng et al. (2023) Accumulation of branched-chain amino acids reprograms glucose metabolism in CD8+T cells with enhanced effector function and anti-tumor response.; Cell Rep, 42: 112186 |
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GSE224250 |
| Yao, Hang et al. (2009) DIDS protects against neuronal injury by blocking Toll-like receptor 2 activated-mechanisms.; J Neurochem, 108: 835-46 |
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GSE12426 |
| Yao, Hisayuki et al. (2018) Leukaemia hijacks a neural mechanism to invade the central nervous system.; Nature, 560: 55-60 |
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GSE114627 |
| Yao, Hong et al. (2022) Discovery of small-molecule activators of nicotinamide phosphoribosyltransferase (NAMPT) and their preclinical neuroprotective activity.; Cell Res, 32: 570-584 |
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GSE174114 |
| Yao, Huanling et al. (2022) Inhibition of Netosis with PAD Inhibitor Attenuates Endotoxin Shock Induced Systemic Inflammation.; Int J Mol Sci, 23: [no pages] |
|
GSE203340 |
| Yao, L et al. (2017) Molecular Profiling of Human Induced Pluripotent Stem Cell-Derived Hypothalamic Neurones Provides Developmental Insights into Genetic Loci for Body Weight Regulation.; J Neuroendocrinol, 29: [no pages] |
|
GSE78789 |
| Yao, Mingze et al. (2018) PCGF5 is required for neural differentiation of embryonic stem cells.; Nat Commun, 9: 1463 |
|
GSE95127 |
| Yao, Mingze et al. (2023) Loss of Dip2b leads to abnormal neural differentiation from mESCs.; Stem Cell Res Ther, 14: 248 |
|
GSE232532 |
| Yao, Mylene W M et al. (2003) Gene expression profiling reveals progesterone-mediated cell cycle and immunoregulatory roles of Hoxa-10 in the preimplantation uterus.; Mol Endocrinol, 17: 610-27 |
|
GSE108 GSE106 |
| Yao, Ruiqing et al. (2014) Nuclear receptor-mediated alleviation of alcoholic fatty liver by polyphenols contained in alcoholic beverages.; PLoS One, 9: e87142 |
|
GSE52644 |
| Yao, Shi-Qi et al. (2023) Retinal transcriptome of neonatal mice after optic nerve injury.; PLoS One, 18: e0286344 |
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GSE232373 |
| Yao, Shijie et al. (2025) TLR9/NF-κB-mediated dendritic cell activation by neutrophil extracellular traps drives pathogenesis in experimental cerebral malaria.; J Neuroinflammation, 22: 206 |
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GSE295000 |
| Yao, Xiaohong et al. (2023) SRSF1 is essential for primary follicle development by regulating granulosa cell survival via mRNA alternative splicing.; Cell Mol Life Sci, 80: 343 |
|
GSE228975 |
| Yao, Xiaosai et al. (2023) PBRM1-deficient PBAF complexes target aberrant genomic loci to activate the NF-κB pathway in clear cell renal cell carcinoma.; Nat Cell Biol, 25: 765-777 |
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GSE222245 |
| Yao, Xuerui et al. (2023) Production of Highly Uniform Midbrain Organoids from Human Pluripotent Stem Cells.; Stem Cells Int, 2023: 3320211 |
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GSE236375 |
| Yao, Yihong et al. (2008) Type I interferon: potential therapeutic target for psoriasis?; PLoS One, 3: e2737 |
|
GSE14905 |
| Yao, Yin et al. (2021) Cell type-specific and cross-population polygenic risk score analyses ofMIR137gene pathway in schizophrenia.; iScience, 24: 102785 |
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GSE129017 |
| Yao, Yu et al. (2021) Molecular Mechanisms of Epileptic Encephalopathy Caused by KCNMA1 Loss-of-Function Mutations.; Front Pharmacol, 12: 775328 |
|
GSE191038 |
| Yao, Zizhen et al. (2014) DUX4-induced gene expression is the major molecular signature in FSHD skeletal muscle.; Hum Mol Genet, 23: 5342-52 |
|
GSE56787 |
| Yap, Chui-Sun et al. (2011) Kinetic profiling of the c-Myc transcriptome and bioinformatic analysis of repressed gene promoters.; Cell Cycle, 10: 2184-96 |
|
GSE20550 |
| Yap, Ee-Lynn et al. (2020) Bidirectional perisomatic inhibitory plasticity of a Fos neuronal network.; Nature, [no vol.]: [no pages] |
|
GSE158840 |
| Yap, Timothy A et al. (2012) AT13148 is a novel, oral multi-AGC kinase inhibitor with potent pharmacodynamic and antitumor activity.; Clin Cancer Res, 18: 3912-23 |
|
GSE38008 |
| Yap, Yann Wan et al. (2013) Gene expression profiling of rotenone-mediated cortical neuronal death: evidence for inhibition of ubiquitin-proteasome system and autophagy-lysosomal pathway, and dysfunction of mitochondrial and calcium signaling.; Neurochem Int, 62: 653-63 |
|
GSE22997 |
| Yarmishyn, Aliaksandr A et al. (2014) HOXD-AS1 is a novel lncRNA encoded in HOXD cluster and a marker of neuroblastoma progression revealed via integrative analysis of noncoding transcriptome.; BMC Genomics, 15 Suppl 9: S7 |
|
GSE40680 |
| Yasko, Jessica R et al. (2018) Transcriptional Profiling of Non-injured Nociceptors After Spinal Cord Injury Reveals Diverse Molecular Changes.; Front Mol Neurosci, 12: 284 |
|
GSE132552 |
| Yasuda, Ken et al. (2020) Sex-specific differences in transcriptomic profiles and cellular characteristics of oligodendrocyte precursor cells.; Stem Cell Res, 46: 101866 |
|
GSE135709 |
| Yasuda, Masayuki et al. (2014) RNA sequence reveals mouse retinal transcriptome changes early after axonal injury.; PLoS One, 9: e93258 |
|
GSE55228 |
| Yasuoka, Akihito et al. (2022) Mastication stimuli enhance the learning ability of weaning-stage rats, altering the hippocampal neuron transcriptome and micromorphology.; Front Behav Neurosci, 16: 1006359 |
|
GSE210292 |
| Yau, Anthony C Y et al. (2022) Inflammation and neutrophil extracellular traps in cerebral cavernous malformation.; Cell Mol Life Sci, 79: 206 |
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GSE246373 |
| Yau, Christina et al. (2008) Genes responsive to both oxidant stress and loss of estrogen receptor function identify a poor prognosis group of estrogen receptor positive primary breast cancers.; Breast Cancer Res, 10: R61 |
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GSE8193 GSE10061 GSE7378 |
| Yauch, Robert L et al. (2008) A paracrine requirement for hedgehog signalling in cancer.; Nature, 455: 406-10 |
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GSE11981.1 GSE11981.2 |
| Yauk, Carole L et al. (2012) Genetic toxicology and toxicogenomic analysis of three cigarette smoke condensates in vitro reveals few differences among full-flavor, blonde, and light products.; Environ Mol Mutagen, 53: 281-96 |
|
GSE30079 |
| Yauk, Carole L et al. (2016) Application of the TGx-28.65 transcriptomic biomarker to classify genotoxic and non-genotoxic chemicals in human TK6 cells in the presence of rat liver S9.; Environ Mol Mutagen, 57: 243-60 |
|
GSE74216 |
| Yavari, Arash et al. (2016) Chronic Activation of ?2 AMPK Induces Obesity and Reduces ? Cell Function.; Cell Metab, 23: 821-36 |
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GSE73436 |
| Yazdani, Neema et al. (2016) Striatal transcriptome analysis of a congenic mouse line (chromosome 11: 50-60Mb) exhibiting reduced methamphetamine sensitivity.; Genom Data, 8: 77-80 |
|
GSE66366 |
| Yazdi, Puya G et al. (2013) Differential gene expression reveals mitochondrial dysfunction in an imprinting center deletion mouse model of Prader-Willi syndrome.; Clin Transl Sci, 6: 347-55 |
|
GSE41759 |
| Ydens, Elke et al. (2020) Profiling peripheral nerve macrophages reveals two macrophage subsets with distinct localization, transcriptome and response to injury.; Nat Neurosci, 23: 676-689 |
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GSE144705 GSE144702 |
| Ye, Fei et al. (2013) Protective properties of radio-chemoresistant glioblastoma stem cell clones are associated with metabolic adaptation to reduced glucose dependence.; PLoS One, 8: e80397 |
|
GSE46531 |
| Ye, Hui et al. (2008) Transcriptomic dissection of tongue squamous cell carcinoma.; BMC Genomics, 9: 69 |
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GSE9844 |