List of all 21,851 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Ye, Junping et al. (2023) Transition of allele-specific DNA hydroxymethylation at regulatory loci is associated with phenotypic variation in monozygotic twins discordant for psychiatric disorders.; BMC Med, 21: 491 |
|
GSE246593 |
| Ye, Junqing et al. (2016) Pluripotent stem cells induced from mouse neural stem cells and small intestinal epithelial cells by small molecule compounds.; Cell Res, 26: 34-45 |
|
GSE75522 |
| Ye, Kaiqiang et al. (2023) Spatial transcriptomic profiling of isolated microregions in tissue sections utilizing laser-induced forward transfer.; PLoS One, 19: e0305977 |
|
GSE235774 |
| Ye, Lingying et al. (2016) TCR usage, gene expression and function of two distinct FOXP3(+)Treg subsets within CD4(+)CD25(hi) T cells identified by expression of CD39 and CD45RO.; Immunol Cell Biol, 94: 293-305 |
|
GSE47667 |
| Ye, Longyun et al. (2020) A critical role for c-Myc in group 2 innate lymphoid cell activation.; Allergy, 75: 841-852 |
|
GSE129309 |
| Ye, Min et al. (2013) C/EBPa controls acquisition and maintenance of adult haematopoietic stem cell quiescence.; Nat Cell Biol, 15: 385-94 |
|
GSE42234 |
| Ye, Ping et al. (2007) G-protein-coupled receptors in aldosterone-producing adenomas: a potential cause of hyperaldosteronism.; J Endocrinol, 195: 39-48 |
|
GSE8514 |
| Ye, Qing et al. (2021) SARS-CoV-2 infection in the mouse olfactory system.; Cell Discov, 7: 49 |
|
GSE173186 |
| Ye, Siyang et al. (2024) YAP1 preserves tubular mitochondrial quality control to mitigate diabetic kidney disease.; Redox Biol, 78: 103435 |
|
GSE256447 |
| Ye, Tao et al. (2021) Efficient manipulation of gene dosage in human iPSCs using CRISPR/Cas9 nickases.; Commun Biol, 4: 195 |
|
GSE160224 |
| Ye, Xin et al. (2009) Norrin, frizzled-4, and Lrp5 signaling in endothelial cells controls a genetic program for retinal vascularization.; Cell, 139: 285-98 |
|
GSE16703 GSE16707 GSE16691 GSE16705 |
| Ye, Yizhou et al. (2013) Dysfunctional co-expression network analysis of familial hypercholesterolemia.; J Cardiol, 62: 58-62 |
|
GSE6088 |
| Yeh, Chien-Fu et al. (2023) Antipsychotic drug trifluoperazine as a potential therapeutic agent against nasopharyngeal carcinoma.; Head Neck, 45: 316-328 |
|
GSE192860 |
| Yeh, Chung-Min et al. (2016) Epigenetic silencing of the NR4A3 tumor suppressor, by aberrant JAK/STAT signaling, predicts prognosis in gastric cancer.; Sci Rep, 6: 31690 |
|
GSE78714 |
| Yeh, Kwo-yih et al. (2011) Hypoxia-inducible factor-2? and iron absorptive gene expression in Belgrade rat intestine.; Am J Physiol Gastrointest Liver Physiol, 301: G82-90 |
|
GSE7970 |
| Yeh, Yung-Hsin et al. (2013) Region-specific gene expression profiles in the left atria of patients with valvular atrial fibrillation.; Heart Rhythm, 10: 383-91 |
|
GSE41177 |
| Yelagandula, Ramesh et al. (2023) ZFP462 safeguards neural lineage specification by targeting G9A/GLP-mediated heterochromatin to silence enhancers.; Nat Cell Biol, 25: 42-55 |
|
GSE176321 |
| Yellajoshyula, Dhananjay et al. (2011) Geminin promotes neural fate acquisition of embryonic stem cells by maintaining chromatin in an accessible and hyperacetylated state.; Proc Natl Acad Sci U S A, 108: 3294-9 |
|
GSE25737 |
| Yellajoshyula, Dhananjay et al. (2012) Geminin regulates the transcriptional and epigenetic status of neuronal fate-promoting genes during mammalian neurogenesis.; Mol Cell Biol, 32: 4549-60 |
|
GSE39657 |
| Yellajoshyula, Dhananjay et al. (2017) The DYT6 Dystonia Protein THAP1 Regulates Myelination within the Oligodendrocyte Lineage.; Dev Cell, 42: 52-67.e4 |
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GSE97372 |
| Yellajoshyula, Dhananjay et al. (2021) THAP1 modulates oligodendrocyte maturation by regulating ECM degradation in lysosomes.; Proc Natl Acad Sci U S A, 118: [no pages] |
|
GSE161556 |
| Yen, Ya-Ping et al. (2018) Dlk1-Dio3locus-derived lncRNAs perpetuate postmitotic motor neuron cell fate and subtype identity.; Elife, 7: [no pages] |
|
GSE114228 |
| Yen, Ya-Ping et al. (2025) The motor neuron m6A repertoire governs neuronal homeostasis and FTO inhibition mitigates ALS symptom manifestation.; Nat Commun, 16: 4063 |
|
GSE290244 |
| Yenerall, Paul et al. (2023) Use of the dTAG system in vivo to degrade CDK2 and CDK5 in adult mice and explore potential safety liabilities.; Toxicol Sci, 194: 53-69 |
|
GSE226386 GSE226388 |
| Yeo, Alan T et al. (2022) Single-cell RNA sequencing reveals evolution of immune landscape during glioblastoma progression.; Nat Immunol, 23: 971-984 |
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GSE196174 |
| Yeo, Calvin W S et al. (2012) Parkin pathway activation mitigates glioma cell proliferation and predicts patient survival.; Cancer Res, 72: 2543-53 |
|
GSE29494 |
| Yeo, Sujung et al. (2015) Neuroprotective changes in degeneration-related gene expression in the substantia nigra following acupuncture in an MPTP mouse model of Parkinsonism: Microarray analysis.; Genet Mol Biol, 38: 115-27 |
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GSE48293 |
| Yeoh, Eng-Juh et al. (2002) Classification, subtype discovery, and prediction of outcome in pediatric acute lymphoblastic leukemia by gene expression profiling.; Cancer Cell, 1: 133-43 |
|
yeoh-leukemia |
| Yeom, Kyu-Hyeon et al. (2021) Tracking pre-mRNA maturation across subcellular compartments identifies developmental gene regulation through intron retention and nuclear anchoring.; Genome Res, [no vol.]: [no pages] |
|
GSE159944 GSE159990.1 GSE159919 |
| Yeon, Gyu-Bum et al. (2021) NFIB induces functional astrocytes from human pluripotent stem cell-derived neural precursor cells mimicking in vivo astrogliogenesis.; J Cell Physiol, [no vol.]: [no pages] |
|
GSE157768 GSE203345 |
| Yesupatham, Sathish Kumar et al. (2026) Transcriptome profiling suggests molecular sexual dimorphism in lumbosacral dorsal root ganglia and sex-specific mechanisms underlying visceral pain.; Physiol Genomics, 58: 12-31 |
|
GSE294967 |
| Yeung, Emily S H et al. (2025) Biphasic actions of the adenosine A2a receptor antagonist istradefylline in mice with obstructive uropathy.; Sci Rep, 15: 41110 |
|
GSE299417 |
| Yeung, Frank et al. (2013) Nontelomeric role for Rap1 in regulating metabolism and protecting against obesity.; Cell Rep, 3: 1847-56 |
|
GSE46209 |
| Yheskel, Matanel et al. (2024) KDM5-mediated transcriptional activation of ribosomal protein genes alters translation efficiency to regulate mitochondrial metabolism in neurons.; Nucleic Acids Res, 52: 6201-6219 |
|
GSE245515 |
| Yi, Dazhuang et al. (2021) Alteration ofN6-Methyladenosine mRNA Methylation in a Rat Model of Cerebral Ischemia-Reperfusion Injury.; Front Neurosci, 15: 605654 |
|
GSE163614 |
| Yi, Sang-Hoon et al. (2014) Foxa2 acts as a co-activator potentiating expression of the Nurr1-induced DA phenotype via epigenetic regulation.; Development, 141: 761-72 |
|
GSE54086 |
| Yi, Siqi et al. (2020) E2A regulates neural ectoderm fate specification in human embryonic stem cells.; Development, 147: [no pages] |
|
GSE154625 GSE154482 |
| Yi, Yong et al. (2013) The functional impairment of HCC-infiltrating ?? T cells, partially mediated by regulatory T cells in a TGF?- and IL-10-dependent manner.; J Hepatol, 58: 977-83 |
|
GSE38476 |
| Yi, Yongjun et al. (2024) Conversion of glioma cells into neuron-like cells by small molecules.; iScience, 27: 111091 |
|
GSE262741 |
| Yi, Zhenghui et al. (2012) Blood-based gene expression profiles models for classification of subsyndromal symptomatic depression and major depressive disorder.; PLoS One, 7: e31283 |
|
GSE32280 |
| Yildirim, Eda et al. (2013) Xist RNA is a potent suppressor of hematologic cancer in mice.; Cell, 152: 727-42 |
|
GSE43961 |
| Yildirim, Ferah et al. (2019) Early epigenomic and transcriptional changes reveal Elk-1 transcription factor as a therapeutic target in Huntington's disease.; Proc Natl Acad Sci U S A, 116: 24840-24851 |
|
GSE140118 |
| Yildirim, Ozlem et al. (2011) Mbd3/NURD complex regulates expression of 5-hydroxymethylcytosine marked genes in embryonic stem cells.; Cell, 147: 1498-510 |
|
GSE31008 |
| Yildiz, Gokhan et al. (2013) Genome-wide transcriptional reorganization associated with senescence-to-immortality switch during human hepatocellular carcinogenesis.; PLoS One, 8: e64016 |
|
GSE17548 GSE17546 |
| Yilmaz, Atilgan et al. (2018) Defining essential genes for human pluripotent stem cells by CRISPR-Cas9 screening in haploid cells.; Nat Cell Biol, 20: 610-619 |
|
GSE103846 |
| Yilmaz, Gokhan et al. (2010) Induction of neuro-protective/regenerative genes in stem cells infiltrating post-ischemic brain tissue.; Exp Transl Stroke Med, 2: 11 |
|
GSE21393 |
| Yilmaz, Melis et al. (2021) Overexpression of schizophrenia susceptibility factor human complement C4A promotes excessive synaptic loss and behavioral changes in mice.; Nat Neurosci, 24: 214-224 |
|
GSE161557 |
| Yim, Aldrin K Y et al. (2022) Disentangling glial diversity in peripheral nerves at single-nuclei resolution.; Nat Neurosci, 25: 238-251 |
|
GSE181858 |
| Yim, Annie et al. (2020) mitoXplorer, a visual data mining platform to systematically analyze and visualize mitochondrial expression dynamics and mutations.; Nucleic Acids Res, 48: 605-632 |
|
GSE131249 |
| Yim, Christina Y et al. (2016) G0S2 Suppresses Oncogenic Transformation by Repressing a MYC-Regulated Transcriptional Program.; Cancer Res, 76: 1204-13 |
|
GSE74696 |
| Yim, Kristina M et al. (2024) Cell type-specific dysregulation of gene expression due toChd8haploinsufficiency during mouse cortical development.; bioRxiv, [no vol.]: [no pages] |
|
GSE273270 GSE273765 |
| Yin, Amelia et al. (2024) Chronic hypoxia impairs skeletal muscle repair via HIF-2α stabilization.; J Cachexia Sarcopenia Muscle, 15: 631-645 |
|
GSE243799 |
| Yin, Changjun et al. (2019) ApoE attenuates unresolvable inflammation by complex formation with activated C1q.; Nat Med, 25: 496-506 |
|
GSE85775 GSE85774 |
| Yin, Gang et al. (2022) Upregulated lncARAT in Schwann cells promotes axonal regeneration by recruiting and activating proregenerative macrophages.; Mol Med, 28: 76 |
|
GSE149657 |
| Yin, Jilong et al. (2026) CARM1-mediated hypoxanthine-enriched exosomes rewire inosine metabolism and impair CD8+T cell antitumor function.; Cell Death Differ, [no vol.]: [no pages] |
|
GSE308156 |
| Yin, Jun et al. (2026) Cerebellar microglia-derived IL-17A mitigates autism-related behavioral and synaptic deficits.; Mol Psychiatry, 31: 3154-3168 |
|
GSE287731 |
| Yin, Kathleen et al. (2016) Neuronal cell lines as model dorsal root ganglion neurons: A transcriptomic comparison.; Mol Pain, 12: [no pages] |
|
GSE75691 |
| Yin, Kelvin et al. (2022) Senescence-induced endothelial phenotypes underpin immune-mediated senescence surveillance.; Genes Dev, 36: 533-549 |
|
GSE171147 |
| Yin, Li et al. (2018) In silicoanalysis of expression data during the early priming stage of liver regeneration after partial hepatectomy in rat.; Oncotarget, 9: 11794-11804 |
|
GSE55434 |
| Yin, Nuoya et al. (2019) Embryonic stem cell- and transcriptomics-based in vitro analyses reveal that bisphenols A, F and S have similar and very complex potential developmental toxicities.; Ecotoxicol Environ Saf, 176: 330-338 |
|
GSE120224 |
| Yin, Peng et al. (2020) Phosphorylation of myelin regulatory factor by PRKG2 mediates demyelination in Huntington's disease.; EMBO Rep, 21: e49783 |
|
GSE145044 |
| Yin, Tao et al. (2024) Breaking NGF-TrkA immunosuppression in melanoma sensitizes immunotherapy for durable memory T cell protection.; Nat Immunol, [no vol.]: [no pages] |
|
GSE236673 GSE236674 |
| Yin, Wencheng et al. (2020) Transcriptional, Behavioral and Biochemical Profiling in the 3xTg-AD Mouse Model Reveals a Specific Signature of Amyloid Deposition and Functional Decline in Alzheimer's Disease.; Front Neurosci, 14: 602642 |
|
GSE161904 |
| Yin, Yao et al. (2025) Generation of self-organized neuromusculoskeletal tri-tissue organoids from human pluripotent stem cells.; Cell Stem Cell, 32: 157-171.e8 |
|
GSE270178 |
| Yin, Zhuoran et al. (2023) APOE4 impairs the microglial response in Alzheimer's disease by inducing TGFβ-mediated checkpoints.; Nat Immunol, 24: 1839-1853 |
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GSE234498 GSE235630 GSE234502 GSE234350 GSE234480 GSE234413 GSE234380 GSE234348 GSE234416 GSE234383 GSE234485 GSE234488 GSE234496 GSE234391 GSE234385 |
| Yin, Zhuoran et al. (2023) Identification of a protective microglial state mediated by miR-155 and interferon-γ signaling in a mouse model of Alzheimer's disease.; Nat Neurosci, 26: 1196-1207 |
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GSE221080 GSE220304 GSE205485 |
| Yin, Zhuoran et al. (2024) Microglia in the aged brain develop a hypoactive molecular phenotype after surgery.; J Neuroinflammation, 21: 323 |
|
GSE283401 |
| Ying, Haoqiang et al. (2012) Oncogenic Kras maintains pancreatic tumors through regulation of anabolic glucose metabolism.; Cell, 149: 656-70 |
|
GSE32277 |
| Ying, Zhe et al. (2018) Biglycan gene connects metabolic dysfunction with brain disorder.; Biochim Biophys Acta Mol Basis Dis, 1864: 3679-3687 |
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GSE64808 GSE64807 GSE108446 |
| Yiğit, Esra Nur et al. (2023) A transcriptome based approach to predict candidate drug targets and drugs for Parkinson's disease using anin vitro6-OHDA model.; Mol Omics, 19: 218-228 |
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GSE198009 |