List of all 21,851 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Ying, Zhe et al. (2018) Biglycan gene connects metabolic dysfunction with brain disorder.; Biochim Biophys Acta Mol Basis Dis, 1864: 3679-3687 |
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GSE59742 |
| Yip, Linda et al. (2014) Type 1 diabetes in mice and men: gene expression profiling to investigate disease pathogenesis.; Immunol Res, 58: 340-50 |
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GSE52815 |
| Yli-Karjanmaa, Minna et al. (2019) TNF deficiency causes alterations in the spatial organization of neurogenic zones and alters the number of microglia and neurons in the cerebral cortex.; Brain Behav Immun, 82: 279-297 |
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GSE134178 |
| Yoh, Kathryn E et al. (2016) Repression of p63 and induction of EMT by mutant Ras in mammary epithelial cells.; Proc Natl Acad Sci U S A, 113: E6107-E6116 |
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GSE81593 |
| Yokobayashi, Shihori et al. (2013) PRC1 coordinates timing of sexual differentiation of female primordial germ cells.; Nature, 495: 236-40 |
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GSE42782 |
| Yokota, Satoshi et al. (2013) Gene expression changes in the olfactory bulb of mice induced by exposure to diesel exhaust are dependent on animal rearing environment.; PLoS One, 8: e70145 |
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GSE46163 |
| Yokoyama, Atsushi et al. (2014) Identification of myelin transcription factor 1 (MyT1) as a subunit of the neural cell type-specific lysine-specific demethylase 1 (LSD1) complex.; J Biol Chem, 289: 18152-62 |
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GSE49685 |
| Yokoyama, Issei et al. (2020) DMHF (2,5-dimethyl-4-hydroxy-3(2H)-furanone), a volatile food component generated by the Maillard reaction, promotes appetite and changes gene expression in the rat brain through inhalation.; J Food Sci, 85: 1338-1343 |
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GSE138482 |
| Yokoyama, Masataka et al. (2019) p53 plays a crucial role in endothelial dysfunction associated with hyperglycemia and ischemia.; J Mol Cell Cardiol, 129: 105-117 |
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GSE124760 |
| Yokoyama, Satoru et al. (2011) A novel recurrent mutation in MITF predisposes to familial and sporadic melanoma.; Nature, 480: 99-103 |
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GSE31269 |
| Yokoyama, Takashi et al. (2016) MEIS1-mediated transactivation of synaptotagmin-like 1 promotes CXCL12/CXCR4 signaling and leukemogenesis.; J Clin Invest, 126: 1664-78 |
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GSE50645 |
| Yolken, Robert H et al. (2014) Chlorovirus ATCV-1 is part of the human oropharyngeal virome and is associated with changes in cognitive functions in humans and mice.; Proc Natl Acad Sci U S A, 111: 16106-11 |
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GSE117463 |
| Yong, Raymund L et al. (2014) Cell transcriptional state alters genomic patterns of DNA double-strand break repair in human astrocytes.; Nat Commun, 5: 5799 |
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GSE45994 |
| Yoo, Jaehyuk et al. (2012) Opposing regulation of PROX1 by interleukin-3 receptor and NOTCH directs differential host cell fate reprogramming by Kaposi sarcoma herpes virus.; PLoS Pathog, 8: e1002770 |
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GSE12846 |
| Yoo, Jeong-Eun et al. (2021) Trophoblast glycoprotein is a marker for efficient sorting of ventral mesencephalic dopaminergic precursors derived from human pluripotent stem cells.; NPJ Parkinsons Dis, 7: 61 |
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GSE171769 |
| Yoo, Judy J et al. (2025) Early Life Injury Alters Spinal Astrocyte Development.; J Neurosci, 45: [no pages] |
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GSE289540 |
| Yoo, Miran et al. (2020) Persistence of Fear Memory Depends on a Delayed Elevation of BAF53b and FGF1 Expression in the Lateral Amygdala.; J Neurosci, 40: 7133-7141 |
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GSE145944 |
| Yoo, Seungyeul et al. (2015) Integrative analysis of DNA methylation and gene expression data identifies EPAS1 as a key regulator of COPD.; PLoS Genet, 11: e1004898 |
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GSE62974.1 GSE62974.2 |
| Yoo, Taesun et al. (2022) Age, brain region, and gene dosage-differential transcriptomic changes inShank3-mutant mice.; Front Mol Neurosci, 15: 1017512 |
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GSE201853 GSE201621 |
| Yoo, Ye-Eun et al. (2021) Early Chronic Memantine Treatment-Induced Transcriptomic Changes in Wild-Type andShank2-Mutant Mice.; Front Mol Neurosci, 14: 712576 |
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GSE171931 |
| Yoo, Ye-Eun et al. (2022) Brain region and gene dosage-differential transcriptomic changes inShank2-mutant mice.; Front Mol Neurosci, 15: 977305 |
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GSE200439 |
| Yoo, Yongjin et al. (2023) A cell therapy approach to restore microglial Trem2 function in a mouse model of Alzheimer's disease.; Cell Stem Cell, 30: 1043-1053.e6 |
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GSE235607 |
| Yoo, Young A et al. (2024) Asparagine Dependency Is a Targetable Metabolic Vulnerability in TP53-Altered Castration-Resistant Prostate Cancer.; Cancer Res, 84: 3004-3022 |
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GSE215153 |
| Yook, Chaehyun et al. (2019) A TBR1-K228E Mutation InducesTbr1Upregulation, Altered Cortical Distribution of Interneurons, Increased Inhibitory Synaptic Transmission, and Autistic-Like Behavioral Deficits in Mice.; Front Mol Neurosci, 12: 241 |
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GSE134526 |
| Yoon, Heejei et al. (2002) Gene expression profiling of isogenic cells with different TP53 gene dosage reveals numerous genes that are affected by TP53 dosage and identifies CSPG2 as a direct target of p53.; Proc Natl Acad Sci U S A, 99: 15632-7 |
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GSE90 |
| Yoon, Heejei et al. (2017) LMP1+SLAMF1high cells are associated with drug resistance in Epstein-Barr virus-positive Farage cells.; Oncotarget, 8: 24621-24634 |
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GSE81413 |
| Yoon, Jeehyun et al. (2021) A chemical biology approach reveals a dependency of glioblastoma on biotin distribution.; Sci Adv, 7: eabf6033 |
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GSE149366 |
| Yoon, Jimin et al. (2022) The endoplasmic reticulum proteostasis network profoundly shapes the protein sequence space accessible to HIV envelope.; PLoS Biol, 20: e3001569 |
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GSE171356 |
| Yoon, John K et al. (2024) Preclinical lentiviral hematopoietic stem cell gene therapy corrects Pompe disease-related muscle and neurological manifestations.; Mol Ther, 32: 3847-3864 |
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GSE247070.2 GSE247070.1 |
| Yosef, Arthur et al. (2023) Normalization of Large-Scale Transcriptome Data Using Heuristic Methods.; Bioinform Biol Insights, 17: 11779322231160397 |
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GSE189788 |
| Yoshida, Kazushi et al. (2017) Inhalation of a racemic mixture (R,S)-linalool by rats experiencing restraint stress alters neuropeptide and MHC class I gene expression in the hypothalamus.; Neurosci Lett, 653: 314-319 |
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GSE90923 |
| Yoshida, Momoko et al. (2014) Analysis of genes causing hypertension and stroke in spontaneously hypertensive rats: gene expression profiles in the brain.; Int J Mol Med, 33: 887-96 |
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GSE41452 |
| Yoshida, Saishu et al. (2024) Positive regulation of Hedgehog signaling via phosphorylation of GLI2/GLI3 by DYRK2 kinase.; Proc Natl Acad Sci U S A, 121: e2320070121 |
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GSE267749 |
| Yoshida, Shigeo et al. (2004) Expression profiling of the developing and mature Nrl-/- mouse retina: identification of retinal disease candidates and transcriptional regulatory targets of Nrl.; Hum Mol Genet, 13: 1487-503 |
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GSE8972 |
| Yoshida, Teruhiko et al. (2024) NAD deficiency contributes to progressive kidney disease in HIV-nephropathy mice.; Am J Physiol Renal Physiol, 327: F450-F462 |
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GSE252711 |
| Yoshida, Teruhiko et al. (2024) PKR activation-induced mitochondrial dysfunction in HIV-transgenic mice with nephropathy.; Elife, 12: [no pages] |
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GSE205058 |
| Yoshihara, Kosuke et al. (2009) Gene expression profiling of advanced-stage serous ovarian cancers distinguishes novel subclasses and implicates ZEB2 in tumor progression and prognosis.; Cancer Sci, 100: 1421-8 |
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GSE12470 |
| Yoshihara, Kosuke et al. (2010) Gene expression profile for predicting survival in advanced-stage serous ovarian cancer across two independent datasets.; PLoS One, 5: e9615 |
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GSE17260 |
| Yoshihara, Kosuke et al. (2012) High-risk ovarian cancer based on 126-gene expression signature is uniquely characterized by downregulation of antigen presentation pathway.; Clin Cancer Res, 18: 1374-85 |
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GSE32063 |
| Yoshihara, Tomomi et al. (2023) Aldh1a2 + fibroblastic reticular cells regulate lymphocyte recruitment in omental milky spots.; J Exp Med, 220: [no pages] |
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GSE224315 |
| Yoshikawa, Tomoki et al. (2010) Dynamic innate immune responses of human bronchial epithelial cells to severe acute respiratory syndrome-associated coronavirus infection.; PLoS One, 5: e8729 |
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GSE17400 |
| Yoshikawa, Yoshie et al. (2011) Frequent deletion of 3p21.1 region carrying semaphorin 3G and aberrant expression of the genes participating in semaphorin signaling in the epithelioid type of malignant mesothelioma cells.; Int J Oncol, 39: 1365-74 |
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GSE29370 |
| Yoshimoto, Takuya et al. (2023) The Rax homeoprotein in Müller glial cells is required for homeostasis maintenance of the postnatal mouse retina.; J Biol Chem, 299: 105461 |
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GSE237650 |
| Yoshino, Jun et al. (2012) Resveratrol supplementation does not improve metabolic function in nonobese women with normal glucose tolerance.; Cell Metab, 16: 658-64 |
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GSE41168 |
| Yoshioka, Hiroki et al. (2022) Deletion of Tfam in Prx1-Cre expressing limb mesenchyme results in spontaneous bone fractures.; J Bone Miner Metab, 40: 839-852 |
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GSE196628 |
| Yoshizuka, Naoto et al. (2005) Human immunodeficiency virus type 1 Vpr-dependent cell cycle arrest through a mitogen-activated protein kinase signal transduction pathway.; J Virol, 79: 11366-81 |
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GSE2296 |
| Yosten, Gina Lc et al. (2020) GPR160 de-orphanization reveals critical roles in neuropathic pain in rodents.; J Clin Invest, 130: 2587-2592 |
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GSE143895 |
| You, Chengjia et al. (2024) O-GlcNAcylation mediates Wnt-stimulated bone formation by rewiring aerobic glycolysis.; EMBO Rep, 25: 4465-4487 |
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GSE251951 |
| You, Dorothy J et al. (2024) Eucalyptus Wood Smoke Extract Elicits a Dose-Dependent Effect in Brain Endothelial Cells.; Int J Mol Sci, 25: [no pages] |
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GSE271935 |
| You, Min-Jung et al. (2023) A molecular characterization and clinical relevance of microglia-like cells derived from patients with panic disorder.; Transl Psychiatry, 13: 48 |
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GSE212802 |
| You, Seo-Hee et al. (2013) Nuclear receptor co-repressors are required for the histone-deacetylase activity of HDAC3 in vivo.; Nat Struct Mol Biol, 20: 182-7 |
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GSE42537 |
| You, Xintian et al. (2015) Neural circular RNAs are derived from synaptic genes and regulated by development and plasticity.; Nat Neurosci, 18: 603-10 |
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GSE61991.1 |
| You, Yingnan et al. (2020) Subacute Toxicity Study of Nicotinamide Mononucleotide via Oral Administration.; Front Pharmacol, 11: 604404 |
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GSE157594 |
| You, Zongqi et al. (2023) Ablation of NLRP3 inflammasome attenuates muscle atrophy via inhibiting pyroptosis, proteolysis and apoptosis following denervation.; Theranostics, 13: 374-390 |
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GSE201133 |
| Youm, Yun-Hee et al. (2013) Canonical Nlrp3 inflammasome links systemic low-grade inflammation to functional decline in aging.; Cell Metab, 18: 519-32 |
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GSE43034 |
| Youn, Minyoung et al. (2021) Comparison of the Transcriptomic Signatures in Pediatric and Adult CML.; Cancers (Basel), 13: [no pages] |
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GSE163690 |
| Young, Fraser I et al. (2017) The doublesex-related Dmrta2 safeguards neural progenitor maintenance involving transcriptional regulation of Hes1.; Proc Natl Acad Sci U S A, 114: E5599-E5607 |
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GSE90827 |
| Young, Martin E et al. (2014) Cardiomyocyte-specific BMAL1 plays critical roles in metabolism, signaling, and maintenance of contractile function of the heart.; J Biol Rhythms, 29: 257-76 |
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GSE43073 |
| Young, Nathan P et al. (2016) AMPK governs lineage specification through Tfeb-dependent regulation of lysosomes.; Genes Dev, 30: 535-52 |
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GSE77705 |
| Young, Randee E et al. (2025) Pathogenic PPP2R5D variants disrupt neuronal development and neurite outgrowth in patient-derived neurons that are reversed by allele-specific knockdown.; HGG Adv, 6: 100450 |
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GSE266958 |
| Young, Steven L et al. (2017) Effect of randomized serum progesterone concentration on secretory endometrial histologic development and gene expression.; Hum Reprod, 32: 1903-1914 |
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GSE56980 |
| Young, Wayne et al. (2013) Bowel microbiota moderate host physiological responses to dietary konjac in weanling rats.; J Nutr, 143: 1052-60 |
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GSE26108 |
| Younis, Ihab et al. (2010) Rapid-response splicing reporter screens identify differential regulators of constitutive and alternative splicing.; Mol Cell Biol, 30: 1718-28 |
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GSE19891 |
| Yousef, Hanadie et al. (2019) Aged blood impairs hippocampal neural precursor activity and activates microglia via brain endothelial cell VCAM1.; Nat Med, 25: 988-1000 |
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GSE127758 |
| Youssef, Mohieldin M M et al. (2022) TOB is an effector of the hippocampus-mediated acute stress response.; Transl Psychiatry, 12: 302 |
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GSE186101 |
| Yousuf, Suhail et al. (2023) Spatially Resolved Multi-Omics Single-Cell Analyses Inform Mechanisms of Immune Dysfunction in Pancreatic Cancer.; Gastroenterology, 165: 891-908.e14 |
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GSE205049 |
| Yu, Aixin et al. (2025) Hypoxia-induced circPLOD2a/b promotes the aggressiveness of glioblastoma by suppressing XIRP1 through binding to HuR.; Commun Biol, 8: 71 |
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GSE245634 |
| Yu, Beibei et al. (2025) Neonatal-Inspired Reprogramming of Microglial Pan-Programmed Cell Death Enhances Regeneration in Adult Spinal Cord Injury.; Research (Wash D C), 8: 0759 |
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GSE285895 |
| Yu, Chao et al. (2016) BTG4 is a meiotic cell cycle-coupled maternal-zygotic-transition licensing factor in oocytes.; Nat Struct Mol Biol, 23: 387-94 |
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GSE71257 |
| Yu, Chih-Chieh et al. (2012) Genome-wide DNA methylation and gene expression analyses of monozygotic twins discordant for intelligence levels.; PLoS One, 7: e47081 |
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GSE33476 |
| Yu, Chuanjiang et al. (2024) MEF2B C-terminal mutations enhance transcriptional activity and stability to drive B cell lymphomagenesis.; Nat Commun, 15: 7195 |
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GSE234657 |
| Yu, Dahyun et al. (2022) CK2 alpha prime and alpha-synuclein pathogenic functional interaction mediates synaptic dysregulation in huntington's disease.; Acta Neuropathol Commun, 10: 83 |
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GSE160586 |
| Yu, Diankun et al. (2025) Microglia regulate GABAergic neurogenesis in prenatal human brain through IGF1.; Nature, 646: 676-686 |
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GSE296073.3 |
| Yu, Guangdan et al. (2022) Pathological oligodendrocyte precursor cells revealed in human schizophrenic brains and trigger schizophrenia-like behaviors and synaptic defects in genetic animal model.; Mol Psychiatry, 27: 5154-5166 |
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GSE183341 |
| Yu, Hong et al. (2020) Mitochondrial Transfer of the Mutant HumanND6T14484CGene Causes Visual Loss and Optic Neuropathy.; Transl Vis Sci Technol, 9: 1 |
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GSE147920 |
| Yu, Hong-Bing et al. (2011) Coassembly of REST and its cofactors at sites of gene repression in embryonic stem cells.; Genome Res, 21: 1284-93 |
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GSE28141 |
| Yu, Hongxiang et al. (2012) PRC2/EED-EZH2 complex is up-regulated in breast cancer lymph node metastasis compared to primary tumor and correlates with tumor proliferation in situ.; PLoS One, 7: e51239 |
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GSE41986 GSE30480 |
| Yu, Hua et al. (2011) The gene expression profile of preclinical autoimmune arthritis and its modulation by a tolerogenic disease-protective antigenic challenge.; Arthritis Res Ther, 13: R143 |
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GSE31314 |
| Yu, Hui et al. (2022) Developmental single-cell transcriptomics of hypothalamic POMC neurons reveal the genetic trajectories of multiple neuropeptidergic phenotypes.; Elife, 11: [no pages] |
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GSE181539 |
| Yu, Huimei et al. (2015) Tet3 regulates synaptic transmission and homeostatic plasticity via DNA oxidation and repair.; Nat Neurosci, 18: 836-43 |
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GSE67245 |
| Yu, Huimin et al. (2010) Frizzled 1 and frizzled 2 genes function in palate, ventricular septum and neural tube closure: general implications for tissue fusion processes.; Development, 137: 3707-17 |
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GSE24276 |
| Yu, Jinsheng et al. (2016) Environmental Enteric Dysfunction Includes a Broad Spectrum of Inflammatory Responses and Epithelial Repair Processes.; Cell Mol Gastroenterol Hepatol, 2: 158-174.e1 |
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GSE74681 |
| Yu, Jiongjie et al. (2023) TP53/mTORC1-mediated bidirectional regulation of PD-L1 modulates immune evasion in hepatocellular carcinoma.; J Immunother Cancer, 11: [no pages] |
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GSE240197 |
| Yu, Jun et al. (2021) The m6A Readers YTHDF1 and YTHDF2 Synergistically Control Cerebellar Parallel Fiber Growth by Regulating Local Translation of the Key Wnt5a Signaling Components in Axons.; Adv Sci (Weinh), 8: e2101329 |
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GSE153688 |
| Yu, Jun et al. (2024) The m5C reader protein Ybx1 promotes axon growth by regulating local translation in axons.; Development, 151: [no pages] |
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GSE255394 |
| Yu, Junying et al. (2007) Induced pluripotent stem cell lines derived from human somatic cells.; Science, [no vol.]: [no pages] |
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GSE9071 GSE9164 |
| Yu, Junying et al. (2009) Human induced pluripotent stem cells free of vector and transgene sequences.; Science, 324: 797-801 |
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GSE15148 |
| Yu, Kanglun et al. (2025) Inhibition of AhR improves cortical bone and skeletal muscle function via preservation of neuromuscular junctions.; JCI Insight, 10: [no pages] |
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GSE299537 |
| Yu, Ke-Da et al. (2013) Identification of prognosis-relevant subgroups in patients with chemoresistant triple-negative breast cancer.; Clin Cancer Res, 19: 2723-33 |
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GSE43502 |
| Yu, Kun et al. (2006) A modular analysis of breast cancer reveals a novel low-grade molecular signature in estrogen receptor-positive tumors.; Clin Cancer Res, 12: 3288-96 |
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GSE2294 |
| Yu, Kun et al. (2008) A precisely regulated gene expression cassette potently modulates metastasis and survival in multiple solid cancers.; PLoS Genet, 4: e1000129 |
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GSE5364 |
| Yu, Kwanha et al. (2020) PIK3CA variants selectively initiate brain hyperactivity during gliomagenesis.; Nature, 578: 166-171 |
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GSE133116 |
| Yu, Liqun et al. (2019) Estrogen-independent Myc overexpression confers endocrine therapy resistance on breast cancer cells expressing ERαY537S and ERαD538G mutations.; Cancer Lett, 442: 373-382 |
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GSE108304 |
| Yu, Man et al. (2010) Transcription Factor CHF1/Hey2 Regulates Specific Pathways in Serum Stimulated Primary Cardiac Myocytes: Implications for Cardiac Hypertrophy.; Curr Genomics, 11: 287-96 |
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GSE14288 |
| Yu, Mang et al. (2011) Identification of an IFN-?/mast cell axis in a mouse model of chronic asthma.; J Clin Invest, 121: 3133-43 |
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GSE27066 |