List of all 21,851 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Yu, Mei et al. (2012) Deficiency in nucleotide excision repair family gene activity, especially ERCC3, is associated with non-pigmented hair fiber growth.; PLoS One, 7: e34185 |
|
GSE24009 |
| Yu, Meng et al. (2023) The unique function of Runx1 in skeletal muscle differentiation and regeneration is mediated by an ETS interaction domain.; bioRxiv, [no vol.]: [no pages] |
|
GSE248045 |
| Yu, Min et al. (2023) Integrative multi-omic profiling of adult mouse brain endothelial cells and potential implications in Alzheimer's disease.; Cell Rep, 42: 113392 |
|
GSE185642.2 |
| Yu, Ming et al. (2012) Direct recruitment of polycomb repressive complex 1 to chromatin by core binding transcription factors.; Mol Cell, 45: 330-43 |
|
GSE33659 |
| Yu, Mingcan et al. (2012) Signal inhibition by the dual-specific phosphatase 4 impairs T cell-dependent B-cell responses with age.; Proc Natl Acad Sci U S A, 109: E879-88 |
|
GSE36476 |
| Yu, Peng-Cheng et al. (2024) SMARCA5 reprograms AKR1B1-mediated fructose metabolism to control leukemogenesis.; Dev Cell, 59: 1954-1971.e7 |
|
GSE217881 |
| Yu, Qiang et al. (2023) Bitter taste cells in the ventricular walls of the murine brain regulate glucose homeostasis.; Nat Commun, 14: 1588 |
|
GSE226066 |
| Yu, Shu et al. (2020) Small ubiquitin-like modifier 2 (SUMO2) is critical for memory processes in mice.; FASEB J, 34: 14750-14767 |
|
GSE108196 |
| Yu, Sung-Liang et al. (2021) Transthyretin as a Biomarker to Predict and Monitor Major Depressive Disorder Identified by Whole-Genome Transcriptomic Analysis in Mouse Models.; Biomedicines, 9: [no pages] |
|
GSE151807 |
| Yu, Tengteng et al. (2020) Polycomb-like Protein 3 Induces Proliferation and Drug Resistance in Multiple Myeloma and Is Regulated by miRNA-15a.; Mol Cancer Res, 18: 1063-1073 |
|
GSE128406 |
| Yu, Vanessa et al. (2024) Differential CpG methylation at Nnat in the early establishment of beta cell heterogeneity.; Diabetologia, 67: 1079-1094 |
|
GSE249659 |
| Yu, Wendong et al. (2008) Cyclin T1-dependent genes in activated CD4 T and macrophage cell lines appear enriched in HIV-1 co-factors.; PLoS One, 3: e3146 |
|
GSE11462 |
| Yu, Wenxi et al. (2024) Dentate gyrus granule cells are a locus of pathology in Scn8a developmental encephalopathy.; Neurobiol Dis, 199: 106591 |
|
GSE235193 |
| Yu, Xiao et al. (2024) RUNX1-IT1 acts as a scaffold of STAT1 and NuRD complex to promote ROS-mediated NF-κB activation and ovarian cancer progression.; Oncogene, 43: 420-433 |
|
GSE245778 |
| Yu, Xiaoyu et al. (2022) Extracellular vesicle-mediated delivery of circDYM alleviates CUS-induced depressive-like behaviours.; J Extracell Vesicles, 11: e12185 |
|
GSE159904 |
| Yu, Xiaozhong et al. (2006) A system-based approach to interpret dose- and time-dependent microarray data: quantitative integration of gene ontology analysis for risk assessment.; Toxicol Sci, 92: 560-77 |
|
GSE1888 |
| Yu, Xinzhu et al. (2020) Context-Specific Striatal Astrocyte Molecular Responses Are Phenotypically Exploitable.; Neuron, 108: 1146-1162.e10 |
|
GSE153791.1 GSE143475 GSE153791.2 |
| Yu, Yanlin et al. (2023) PTEN phosphatase inhibits metastasis by negatively regulating the Entpd5/IGF1R pathway through ATF6.; iScience, 26: 106070 |
|
GSE210359 |
| Yu, Yau-Hua et al. (2012) Network biology of tumor stem-like cells identified a regulatory role of CBX5 in lung cancer.; Sci Rep, 2: 584 |
|
GSE35603 |
| Yu, Yong et al. (2012) Bcl11a is essential for lymphoid development and negatively regulates p53.; J Exp Med, 209: 2467-83 |
|
GSE40746 |
| Yu, Zecheng et al. (2024) Oligoadenylate synthetase-like aggravated Newcastle disease virus-induced necroptosis in glioma cells.; Front Oncol, 15: 1574214 |
|
GSE227791 |
| Yu, Zhen et al. (2022) Indirubin-3'-monoxime acts as proteasome inhibitor: Therapeutic application in multiple myeloma.; EBioMedicine, 78: 103950 |
|
GSE194379 |
| Yuan, Fang et al. (2018) Induction of human somatostatin and parvalbumin neurons by expressing a single transcription factor LIM homeobox 6.; Elife, 7: [no pages] |
|
GSE114553 |
| Yuan, Gang et al. (2021) Elevated NSD3 histone methylation activity drives squamous cell lung cancer.; Nature, 590: 504-508 |
|
GSE149272 |
| Yuan, Huijun et al. (2024) IC100, a humanized therapeutic monoclonal anti-ASC antibody alleviates oxygen-induced retinopathy in mice.; Angiogenesis, 27: 423-440 |
|
GSE261490 |
| Yuan, Jingsheng et al. (2022) A novel medication decision gene signature predicts response to individualized therapy and prognosis outcomes in hepatocellular carcinoma patients.; Front Immunol, 13: 990571 |
|
GSE213615 |
| Yuan, Jun-Jie et al. (2020) Quantitative Profiling of Oxylipins in Acute Experimental Intracerebral Hemorrhage.; Front Neurosci, 14: 777 |
|
GSE149317 |
| Yuan, Lei et al. (2009) Antiinflammatory effects of the ETS factor ERG in endothelial cells are mediated through transcriptional repression of the interleukin-8 gene.; Circ Res, 104: 1049-57 |
|
GSE14801 |
| Yuan, Lin et al. (2025) Mitochondrial activity tunes nociceptor resilience to excitotoxicity.; Cell, 188: 6436-6452.e18 |
|
GSE302928 |
| Yuan, Qian et al. (2025) PRDM16 Reduces Cellular Senescence by Upregulating GSTM1.; Adv Sci (Weinh), 12: e01233 |
|
GSE275768 |
| Yuan, Ruiyi et al. (2026) Modulation of striatal cAMP levels: A key pathway in the treatment of hyperkinetic movement disorders.; iScience, 29: 114457 |
|
GSE298638 |
| Yuan, Shuqiang et al. (2015) Metabolic activation of mitochondria in glioma stem cells promotes cancer development through a reactive oxygen species-mediated mechanism.; Stem Cell Res Ther, 6: 198 |
|
GSE28220 |
| Yuan, Tao et al. (2024) Josephin domain containing 2 (JOSD2) promotes lung cancer by inhibiting LKB1 (Liver kinase B1) activity.; Signal Transduct Target Ther, 9: 11 |
|
GSE198415 |
| Yuan, Tiezheng et al. (2014) eRNA: a graphic user interface-based tool optimized for large data analysis from high-throughput RNA sequencing.; BMC Genomics, 15: 176 |
|
GSE53450 |
| Yuan, Yukun et al. (2019) Delayed maturation of GABAergic signaling in the Scn1a and Scn1b mouse models of Dravet Syndrome.; Sci Rep, 9: 6210 |
|
GSE128573 |
| Yue, Feng et al. (2025) Mitochondrial fatty acid oxidation regulates adult muscle stem cell function through modulating metabolic flux and protein acetylation.; EMBO J, 44: 2566-2595 |
|
GSE158912 |
| Yue, Jingyin et al. (2017) Integrator orchestrates RAS/ERK1/2 signaling transcriptional programs.; Genes Dev, 31: 1809-1820 |
|
GSE85089 |
| Yue, Ming et al. (2017) Oncogenic MYC Activates a Feedforward Regulatory Loop Promoting Essential Amino Acid Metabolism and Tumorigenesis.; Cell Rep, 21: 3819-3832 |
|
GSE106869 |
| Yue, Wendy W S et al. (2024) Endogenous opioid signalling regulates spinal ependymal cell proliferation.; Nature, 634: 407-414 |
|
GSE255883 |
| Yuen, Tony et al. (2012) Disease-drug pairs revealed by computational genomic connectivity mapping on GBA1 deficient, Gaucher disease mice.; Biochem Biophys Res Commun, 422: 573-7 |
|
GSE23086 |
| Yugami, Masato et al. (2023) Sbp2l contributes to oligodendrocyte maturation through translational control in Tcf7l2 signaling.; iScience, 26: 108451 |
|
GSE228245 GSE228241 |
| Yui, Daishi et al. (2015) Enhanced Phospholipase A2 Group 3 Expression by Oxidative Stress Decreases the Insulin-Degrading Enzyme.; PLoS One, 10: e0143518 |
|
GSE75047 |
| Yuki, Kanako et al. (2024) GPR124 regulates murine brain embryonic angiogenesis and BBB formation by an intracellular domain-independent mechanism.; Development, 151: [no pages] |
|
GSE225367 |
| Yuki, Masaaki et al. (2024) A Japanese herbal medicine (kampo), hochuekkito (TJ-41), has anti-inflammatory effects on the chronic obstructive pulmonary disease mouse model.; Sci Rep, 14: 10361 |
|
GSE239537 |
| Yulyaningsih, Ernie et al. (2024) DNL343 is an investigational CNS penetrant eukaryotic initiation factor 2B activator that prevents and reverses the effects of neurodegeneration caused by the integrated stress response.; Elife, 12: [no pages] |
|
GSE240150 |
| Yun, Beth et al. (2010) MicroRNA-deficient Schwann cells display congenital hypomyelination.; J Neurosci, 30: 7722-8 |
|
GSE16741 |
| Yun, Mi Ran et al. (2018) Enhancer Remodeling and MicroRNA Alterations Are Associated with Acquired Resistance to ALK Inhibitors.; Cancer Res, 78: 3350-3362 |
|
GSE81261 |
| Yun, Wonjin et al. (2022) OCT4-induced oligodendrocyte progenitor cells promote remyelination and ameliorate disease.; NPJ Regen Med, 7: 4 |
|
GSE130063 GSE117664 |
| Yuri, Shunsuke et al. (2009) Sall4 is essential for stabilization, but not for pluripotency, of embryonic stem cells by repressing aberrant trophectoderm gene expression.; Stem Cells, 27: 796-805 |
|
GSE14219 |
| Yurkovetskiy, Leonid et al. (2013) Gender bias in autoimmunity is influenced by microbiota.; Immunity, 39: 400-12 |
|
GSE49467 |
| Yurtdas, Zeliha Yesim et al. (2024) Grainyhead-like 2 Deficiency and Kidney Cyst Growth in a Mouse Model.; J Am Soc Nephrol, 35: 838-853 |
|
GSE210217 |
| Yusenko, Maria V et al. (2009) High-resolution DNA copy number and gene expression analyses distinguish chromophobe renal cell carcinomas and renal oncocytomas.; BMC Cancer, 9: 152 |
|
GSE11151 |
| Yusufujiang, Aishanjiang et al. (2022) PCBP-1 Regulates the Transcription and Alternative Splicing of Inflammation and Ubiquitination-Related Genes in PC12 Cell.; Front Aging Neurosci, 14: 884837 |
|
GSE196153 |
| Yutsudo, Noriko et al. (2013) fosB-null mice display impaired adult hippocampal neurogenesis and spontaneous epilepsy with depressive behavior.; Neuropsychopharmacology, 38: 895-906 |
|
GSE37056 |
| Yuzwa, Scott A et al. (2016) Proneurogenic Ligands Defined by Modeling Developing Cortex Growth Factor Communication Networks.; Neuron, 91: 988-1004 |
|
GSE84482 |
| Zaas, Aimee K et al. (2009) Gene expression signatures diagnose influenza and other symptomatic respiratory viral infections in humans.; Cell Host Microbe, 6: 207-17 |
|
GSE17156 |
| Zaas, Aimee K et al. (2010) Blood gene expression signatures predict invasive candidiasis.; Sci Transl Med, 2: 21ra17 |
|
GSE20524 |
| Zaba, Lisa C et al. (2009) Effective treatment of psoriasis with etanercept is linked to suppression of IL-17 signaling, not immediate response TNF genes.; J Allergy Clin Immunol, 124: 1022-10.e1-395 |
|
GSE11903 |
| Zabuawala, Tahera et al. (2010) An ets2-driven transcriptional program in tumor-associated macrophages promotes tumor metastasis.; Cancer Res, 70: 1323-33 |
|
GSE12863 |
| Zaccara, S et al. (2014) p53-directed translational control can shape and expand the universe of p53 target genes.; Cell Death Differ, 21: 1522-34 |
|
GSE50650 |
| Zaccaria, Affif et al. (2021) Multiomic Analyses of Dopaminergic Neurons Isolated from Human Substantia Nigra in Parkinson's Disease: A Descriptive and Exploratory Study.; Cell Mol Neurobiol, [no vol.]: [no pages] |
|
GSE169755 |
| Zafar, Atif et al. (2023) Myeloid-CITED2 Deficiency Exacerbates Diet-Induced Obesity and Pro-Inflammatory Macrophage Response.; Cells, 12: [no pages] |
|
GSE218217 |
| Zafeiriou, Maria-Patapia et al. (2020) Developmental GABA polarity switch and neuronal plasticity in Bioengineered Neuronal Organoids.; Nat Commun, 11: 3791 |
|
GSE139101 |
| Zagare, Alise et al. (2023) Omics data integration suggests a potential idiopathic Parkinson's disease signature.; Commun Biol, 6: 1179 |
|
GSE207088 |
| Zagare, Alise et al. (2024) Insulin Resistance Is a Modifying Factor for Parkinson's Disease.; Mov Disord, [no vol.]: [no pages] |
|
GSE237115 GSE237114 |
| Zagare, Alise et al. (2025) Deciphering shared molecular dysregulation across Parkinson's disease variants using a multi-modal network-based data integration and analysis.; NPJ Parkinsons Dis, 11: 63 |
|
GSE278265 GSE208783 |
| Zaghi, Mattia et al. (2023) SETD5 haploinsufficiency affects mitochondrial compartment in neural cells.; Mol Autism, 14: 20 |
|
GSE222188 |
| Zagorski, John et al. (2008) Transcriptional profile of right ventricular tissue during acute pulmonary embolism in rats.; Physiol Genomics, 34: 101-11 |
|
GSE6104 |
| Zagorski, John et al. (2009) Transcriptional changes in right ventricular tissues are enriched in the outflow tract compared with the apex during chronic pulmonary embolism in rats.; Physiol Genomics, 39: 61-71 |
|
GSE11851 |
| Zagorski, John et al. (2016) Differential effect of mild and severe pulmonary embolism on the rat lung transcriptome.; Respir Res, 17: 86 |
|
GSE13535 |
| Zagozewski, Jamie et al. (2020) An OTX2-PAX3 signaling axis regulates Group 3 medulloblastoma cell fate.; Nat Commun, 11: 3627 |
|
GSE132506 |
| Zagranichnaya, Tatiana K et al. (2005) Gene expression profiles in HEK-293 cells with low or high store-operated calcium entry: can regulatory as well as regulated genes be identified?; Physiol Genomics, 21: 14-33 |
|
GSE1309 |
| Zahaf, Amina et al. (2023) Androgens show sex-dependent differences in myelination in immune and non-immune murine models of CNS demyelination.; Nat Commun, 14: 1592 |
|
GSE225254 |
| Zahavi, Eitan Erez et al. (2025) Repeat-element RNAs integrate a neuronal growth circuit.; Cell, [no vol.]: [no pages] |
|
GSE262153 GSE230719 GSE233824 GSE230721 GSE279906 GSE233822 GSE230720 GSE230722 |
| Zahn, Jacob M et al. (2006) Transcriptional profiling of aging in human muscle reveals a common aging signature.; PLoS Genet, 2: e115 |
|
GSE5086 |
| Zahn, Jacob M et al. (2007) AGEMAP: a gene expression database for aging in mice.; PLoS Genet, 3: e201 |
|
GSE9901 GSE9906 GSE9902 GSE9907 GSE9895 GSE9904 GSE9908 GSE9900 GSE9905 GSE9898 |
| Zahoor, Insha et al. (2025) Maresin-1 promotes neuroprotection and modulates metabolic and inflammatory responses in disease-associated cell types in preclinical models of multiple sclerosis.; J Biol Chem, 301: 108226 |
|
GSE276812 |
| Zahova, Simona K et al. (2021) Comparison of mouse models reveals a molecular distinction between psychotic illness in PWS and schizophrenia.; Transl Psychiatry, 11: 433 |
|
GSE198260 |