List of all 21,851 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Zhang, Meng et al. (2020) β-Catenin safeguards the ground state of mousepluripotency by strengthening the robustness of the transcriptional apparatus.; Sci Adv, 6: eaba1593 |
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GSE123691 |
| Zhang, Meng et al. (2021) Erythropoietin promotes abdominal aortic aneurysms in mice through angiogenesis and inflammatory infiltration.; Sci Transl Med, 13: [no pages] |
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GSE174556 |
| Zhang, Meng et al. (2023) A molecularly defined and spatially resolved cell atlas of the whole mouse brain.; bioRxiv, [no vol.]: [no pages] |
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GSE246919 |
| Zhang, Mengjun et al. (2024) SRRM2 phase separation drives assembly of nuclear speckle subcompartments.; Cell Rep, 43: 113827 |
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GSE242898 |
| Zhang, Min et al. (2019) Axonogenesis Is Coordinated by Neuron-Specific Alternative Splicing Programming and Splicing Regulator PTBP2.; Neuron, 101: 690-706.e10 |
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GSE124554 |
| Zhang, Min et al. (2025) PTBP1 Depletion in Mature Astrocytes Reveals Distinct Splicing Alterations Without Neuronal Features.; bioRxiv, [no vol.]: [no pages] |
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GSE294763 |
| Zhang, Ming et al. (2021) Ten-eleven translocation 1 mediated-DNA hydroxymethylation is required for myelination and remyelination in the mouse brain.; Nat Commun, 12: 5091 |
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GSE122838 |
| Zhang, Mingjia et al. (2025) IL-17 enhanced the susceptibility to fluoxetine resistance in depression via the JAK1-STAT6 signaling pathway.; Int Immunopharmacol, 155: 114513 |
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GSE263959 |
| Zhang, Mingliang et al. (2016) Pharmacological Reprogramming of Fibroblasts into Neural Stem Cells by Signaling-Directed Transcriptional Activation.; Cell Stem Cell, 18: 653-67 |
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GSE78938.1 |
| Zhang, Mingming et al. (2023) Delayed denervation-induced muscle atrophy inOpgknockout mice.; Front Physiol, 14: 1127474 |
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GSE220152 |
| Zhang, Mingzi et al. (2025) Brain pericytes derived from human pluripotent stem cells retain vascular and phagocytic functions under hypoxia.; Stem Cells, 43: [no pages] |
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GSE304315 |
| Zhang, Nan et al. (2024) Physiological regulation of neuronal Wnt activity is essential for TDP-43 localization and function.; EMBO J, 43: 3388-3413 |
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GSE246462 |
| Zhang, Ning et al. (2015) Protein misfolding and the pathogenesis of ABCA4-associated retinal degenerations.; Hum Mol Genet, 24: 3220-37 |
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GSE63772 |
| Zhang, Pan et al. (2018) Brain region-dependent gene networks associated with selective breeding for increased voluntary wheel-running behavior.; PLoS One, 13: e0201773 |
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GSE114062 |
| Zhang, Pan et al. (2019) Opioid-Induced Hyperalgesia Is Associated with Dysregulation of Circadian Rhythm and Adaptive Immune Pathways in the Mouse Trigeminal Ganglia and Nucleus Accumbens.; Mol Neurobiol, 56: 7929-7949 |
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GSE126662 |
| Zhang, Peipei et al. (2021) The role of interferon regulatory factor 8 for retinal tissue homeostasis and development of choroidal neovascularisation.; J Neuroinflammation, 18: 215 |
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GSE182504 |
| Zhang, Peisu et al. (2015) Novel RNA- and FMRP-binding protein TRF2-S regulates axonal mRNA transport and presynaptic plasticity.; Nat Commun, 6: 8888 |
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GSE72887 |
| Zhang, Pili et al. (2017) DNA methylation alters transcriptional rates of differentially expressed genes and contributes to pathophysiology in mice fed a high fat diet.; Mol Metab, 6: 327-339 |
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GSE85423 |
| Zhang, Pingzhao et al. (2017) Intrinsic BET inhibitor resistance in SPOP-mutated prostate cancer is mediated by BET protein stabilization and AKT-mTORC1 activation.; Nat Med, 23: 1055-1062 |
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GSE78213 |
| Zhang, Qi et al. (2023) Identifying STRN3-RARA as a new fusion gene for acute promyelocytic leukemia.; Blood, 142: 1494-1499 |
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GSE224815 |
| Zhang, Qian et al. (2024) Single-Cell Transcriptome Reveals Cell Type-Specific Molecular Pathology in a 2VO Cerebral Ischemic Mouse Model.; Mol Neurobiol, 61: 5248-5264 |
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GSE171393 |
| Zhang, Qiang et al. (2023) Neuroprotective Effect of miR-483-5p Against Cardiac Arrest-Induced Mitochondrial Dysfunction Mediated Through the TNFSF8/AMPK/JNK Signaling Pathway.; Cell Mol Neurobiol, 43: 2179-2202 |
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GSE209531 |
| Zhang, Qiangqiang et al. (2016) The Zinc Finger Transcription Factor Sp9 Is Required for the Development of Striatopallidal Projection Neurons.; Cell Rep, 16: 1431-1444 |
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GSE83373 |
| Zhang, Qianying et al. (2024) Spermidine-eIF5A axis is essential for muscle stem cell activation via translational control.; Cell Discov, 10: 94 |
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GSE221641 |
| Zhang, Qing-Shuo et al. (2015) Oxymetholone therapy of fanconi anemia suppresses osteopontin transcription and induces hematopoietic stem cell cycling.; Stem Cell Reports, 4: 90-102 |
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GSE58724 |
| Zhang, Qingquan et al. (2018) Temporal requirements for ISL1 in sympathetic neuron proliferation, differentiation, and diversification.; Cell Death Dis, 9: 247 |
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GSE93306 |
| Zhang, Qingxiu et al. (2019) The interleukin-4/PPARγ signaling axis promotes oligodendrocyte differentiation and remyelination after brain injury.; PLoS Biol, 17: e3000330 |
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GSE131774 |
| Zhang, Qingyang et al. (2021) Nuclear speckle specific hnRNP D-like prevents age- and AD-related cognitive decline by modulating RNA splicing.; Mol Neurodegener, 16: 66 |
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GSE164170 GSE169281 |
| Zhang, Qunzhou et al. (2021) Harnessing 3D collagen hydrogel-directed conversion of human GMSCs into SCP-like cells to generate functionalized nerve conduits.; NPJ Regen Med, 6: 59 |
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GSE180519 |
| Zhang, Ran et al. (2024) Astrocyte-derived extracellular matrix proteins regulate synapse remodeling in stress-induced depression.; bioRxiv, [no vol.]: [no pages] |
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GSE139684 |
| Zhang, Ray et al. (2014) A circadian gene expression atlas in mammals: implications for biology and medicine.; Proc Natl Acad Sci U S A, 111: 16219-24 |
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GSE54650 GSE54651 |
| Zhang, RongKai et al. (2012) Gene expression analyses of subchondral bone in early experimental osteoarthritis by microarray.; PLoS One, 7: e32356 |
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GSE30322 |
| Zhang, Roy et al. (2024) Assessment of biological organ age using molecular pathology in pre-transplant kidney biopsies.; Kidney Int, 106: 302-316 |
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GSE222868 |
| Zhang, Ruixin et al. (2024) Intravenous chaperone treatment of late-stage Alzheimer´s disease (AD) mouse model affects amyloid plaque load, reactive gliosis and AD-related genes.; Transl Psychiatry, 14: 453 |
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GSE263166 |
| Zhang, Runrui et al. (2019) Id4 Downstream of Notch2 Maintains Neural Stem Cell Quiescence in the Adult Hippocampus.; Cell Rep, 28: 1485-1498.e6 |
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GSE116773 |
| Zhang, S et al. (2005) Molecular correlates of emotional learning using genetically selected rat lines.; Genes Brain Behav, 4: 99-109 |
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GSE932 |
| Zhang, Shaoqiong et al. (2024) The m6A methylation and expression profiles of mouse neural stem cells after hypoxia/reoxygenation.; Stem Cell Res Ther, 15: 43 |
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GSE221842 |
| Zhang, Sheng et al. (2023) Decellularised spinal cord matrix manipulates glial niche into repairing phase via serglycin-mediated signalling pathway.; Cell Prolif, 56: e13429 |
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GSE202724 |
| Zhang, Shengze et al. (2025) DISC1 Protects Against Zika Virus Infection and Long-Term Neurological Damage Through AMPK-mTOR-Mediated Autophagy.; Nat Commun, 16: 9841 |
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GSE234128 |
| Zhang, Shiqun et al. (2021) Nonpeptidergic neurons suppress mast cells via glutamate to maintain skin homeostasis.; Cell, 184: 2151-2166.e16 |
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GSE165295 GSE143569 |
| Zhang, Shirley L et al. (2021) A circadian clock regulates efflux by the blood-brain barrier in mice and human cells.; Nat Commun, 12: 617 |
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GSE135874 |
| Zhang, Shuai et al. (2024) Mediator MED23 controls oligodendrogenesis and myelination by modulating Sp1/P300-directed gene programs.; Cell Discov, 10: 102 |
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GSE226122 |
| Zhang, Shuang et al. (2023) Bone marrow adipocytes fuel emergency hematopoiesis after myocardial infarction.; Nat Cardiovasc Res, 2: 1277-1290 |
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GSE169267 |
| Zhang, Shuang-Feng et al. (2022) The epigenetic state of EED-Gli3-Gli1 regulatory axis controls embryonic cortical neurogenesis.; Stem Cell Reports, 17: 2064-2080 |
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GSE169395 |
| Zhang, Shujun et al. (2023) Chromatin accessibility uncovers KRAS-driven FOSL2 promoting pancreatic ductal adenocarcinoma progression through up-regulation of CCL28.; Br J Cancer, 129: 426-443 |
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GSE190903 |
| Zhang, Shuqing et al. (2025) Phlorizin ameliorates cognitive and behavioral impairments via the microbiota-gut-brain axis in high-fat and high-fructose diet-induced obese male mice.; Brain Behav Immun, 123: 193-210 |
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GSE261887 |
| Zhang, Siming et al. (2021) Network Effects of the 15q13.3 Microdeletion on the Transcriptome and Epigenome in Human-Induced Neurons.; Biol Psychiatry, 89: 497-509 |
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GSE135131 |
| Zhang, Siwei et al. (2018) Open chromatin dynamics reveals stage-specific transcriptional networks in hiPSC-based neurodevelopmental model.; Stem Cell Res, 29: 88-98 |
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GSE102352 |
| Zhang, Sui et al. (2012) Identification of the molecular basis of doxorubicin-induced cardiotoxicity.; Nat Med, 18: 1639-42 |
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GSE40289 |
| Zhang, T et al. (2017) MicroRNA-155 regulates casein kinase 1 gamma 2: a potential pathogenetic role in chronic lymphocytic leukemia.; Blood Cancer J, 7: e606 |
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GSE29605 |
| Zhang, Tao et al. (2023) Metabolic orchestration of cell death by AMPK-mediated phosphorylation of RIPK1.; Science, 380: 1372-1380 |
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GSE173938 |
| Zhang, Tianyi et al. (2012) Host genes related to paneth cells and xenobiotic metabolism are associated with shifts in human ileum-associated microbial composition.; PLoS One, 7: e30044 |
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GSE24287 |
| Zhang, Tie-Yuan et al. (2018) Environmental enrichment increases transcriptional and epigenetic differentiation between mouse dorsal and ventral dentate gyrus.; Nat Commun, 9: 298 |
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GSE95740 |
| Zhang, Ting et al. (2019) Human Neural Stem Cells Reinforce Hippocampal Synaptic Network and Rescue Cognitive Deficits in a Mouse Model of Alzheimer's Disease.; Stem Cell Reports, 13: 1022-1037 |
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GSE107806 |
| Zhang, Tong et al. (2009) Enzymes in the NAD+ salvage pathway regulate SIRT1 activity at target gene promoters.; J Biol Chem, 284: 20408-17 |
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GSE13458.1 GSE13458.2 GSE13459 GSE13449 |
| Zhang, Wei et al. (2009) Use of cell lines in the investigation of pharmacogenetic loci.; Curr Pharm Des, 15: 3782-95 |
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GSE9703 |
| Zhang, Wei et al. (2023) HRS mediates tumor immune evasion by regulating proteostasis-associated interferon pathway activation.; Cell Rep, 42: 113352 |
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GSE244678 |
| Zhang, Weiyu et al. (2025) METTL3-dependent m6A RNA methylation regulates transposable elements and represses human naïve pluripotency through transposable element-derived enhancers.; Nucleic Acids Res, 53: [no pages] |
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GSE274217 |
| Zhang, Wen Cai et al. (2012) Glycine decarboxylase activity drives non-small cell lung cancer tumor-initiating cells and tumorigenesis.; Cell, 148: 259-72 |
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GSE33198 |
| Zhang, Wen Cai et al. (2016) Tumour-initiating cell-specific miR-1246 and miR-1290 expression converge to promote non-small cell lung cancer progression.; Nat Commun, 7: 11702 |
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GSE69630 |
| Zhang, Wenbo et al. (2024) Theophylline derivatives promote primordial follicle activation via cAMP-PI3K/Akt pathway and ameliorate fertility deficits in naturally aged mice.; Int J Biol Sci, 20: 5312-5329 |
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GSE263843 |
| Zhang, Wendiao et al. (2023) Human forebrain organoids-based multi-omics analyses reveal PCCB's regulation on GABAergic system contributing to schizophrenia.; Res Sq, [no vol.]: [no pages] |
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GSE226233 |
| Zhang, Wenhao et al. (2016) Isoform Switch of TET1 Regulates DNA Demethylation and Mouse Development.; Mol Cell, 64: 1062-1073 |
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GSE77453 |
| Zhang, Wenhao et al. (2020) Inhibition of Apoptosis Reduces Diploidization of Haploid Mouse Embryonic Stem Cells during Differentiation.; Stem Cell Reports, 15: 185-197 |
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GSE148118 |
| Zhang, Wenhao et al. (2023) IL-13 Activates Cutaneous Schwann Cells to Promote CCL7-Dependent Pruritic Signaling in Atopic Dermatitis.; J Invest Dermatol, [no vol.]: [no pages] |
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GSE218436 |
| Zhang, Wenlong et al. (2023) Dietary intake of α-ketoglutarate ameliorates α-synuclein pathology in mouse models of Parkinson's disease.; Cell Mol Life Sci, 80: 155 |
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GSE214446 |
| Zhang, Wenlong et al. (2023) Neuroprotective effect of a medium-chain triglyceride ketogenic diet on MPTP-induced Parkinson's disease mice: a combination of transcriptomics and metabolomics in the substantia nigra and fecal microbiome.; Cell Death Discov, 9: 251 |
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GSE232039 |
| Zhang, Xi et al. (2023) Irisin exhibits neuroprotection by preventing mitochondrial damage in Parkinson's disease.; NPJ Parkinsons Dis, 9: 13 |
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GSE214542 |
| Zhang, Xiang et al. (2025) SIRT5-mediated desuccinylation of PPA2 enhances HIF-1alpha-dependent adaptation to hypoxic stress and colorectal cancer metastasis.; EMBO J, 44: 2514-2540 |
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GSE276272 |
| Zhang, Xiang H-F et al. (2013) Selection of bone metastasis seeds by mesenchymal signals in the primary tumor stroma.; Cell, 154: 1060-73 |
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GSE47389 |
| Zhang, Xiao et al. (2024) An-Gong-Niu-Huang-Wan (AGNHW) regulates cerebral blood flow by improving hypoperfusion, cerebrovascular reactivity and microcirculation disturbances after stroke.; Chin Med, 19: 73 |
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GSE253928 |
| Zhang, Xiao et al. (2025) A catecholamine-independent pathway controlling adaptive adipocyte lipolysis.; Nat Metab, 8: 96-115 |
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GSE275147.2 GSE275147.3 GSE275147.1 |
| Zhang, Xiaodi et al. (2025) Lewy body dementia promotion by air pollutants.; Science, 389: eadu4132 |
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GSE297423 |
| Zhang, Xiaofang et al. (2025) The nucleocytoplasmic translocation of HINT1 regulates the maturation of cell density.; Life Sci Alliance, 8: [no pages] |
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GSE270956 |
| Zhang, Xiaohan et al. (2024) GlyT1 inhibition by ALX-5407 attenuates allograft rejection through suppression of Th1 cell differentiation.; Front Immunol, 16: 1644529 |
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GSE307193 |
| Zhang, Xiaoli et al. (2024) Translocator protein deficiency blocks the ferroptosis of malignant peripheral nerve sheath tumors through glutathione peroxidase 4.; Front Cell Neurosci, 19: 1624817 |
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GSE270880 |
| Zhang, Xiaoling et al. (2010) Similarities and differences between smoking-related gene expression in nasal and bronchial epithelium.; Physiol Genomics, 41: 1-8 |
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GSE16008 |
| Zhang, Xiaolong et al. (2023) GARP on hepatic stellate cells is essential for the development of liver fibrosis.; J Hepatol, 79: 1214-1225 |
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GSE226103 |
| Zhang, Xiaolu et al. (2023) Ribosomal dysregulation: A conserved pathophysiological mechanism in human depression and mouse chronic stress.; PNAS Nexus, 2: pgad299 |
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GSE229905 |
| Zhang, Xiaomei et al. (2013) A renewable tissue resource of phenotypically stable, biologically and ethnically diverse, patient-derived human breast cancer xenograft models.; Cancer Res, 73: 4885-97 |
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GSE46106 |
| Zhang, Xiaomin et al. (2011) Identification of New SRF Binding Sites in Genes Modulated by SRF Over-Expression in Mouse Hearts.; Gene Regul Syst Bio, 5: 41-59 |
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GSE19874 |
| Zhang, Xiaoming et al. (2022) Epigenetic regulation of innate immune memory in microglia.; J Neuroinflammation, 19: 111 |
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GSE175578.2 GSE175578.1 |
| Zhang, Xiaonan et al. (2014) Induction of mitochondrial dysfunction as a strategy for targeting tumour cells in metabolically compromised microenvironments.; Nat Commun, 5: 3295 |
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GSE53777 |
| Zhang, Xiaoru et al. (2023) Nickel-induced transcriptional memory in lung epithelial cells promotes interferon signaling upon nicotine exposure.; Toxicol Appl Pharmacol, 481: 116753 |
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GSE242791 |
| Zhang, Xiaoshen et al. (2024) RAC1 inhibition ameliorates IBSP-induced bone metastasis in lung adenocarcinoma.; Cell Rep, 43: 114528 |
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GSE225208 |
| Zhang, Xiaotan et al. (2024) Both partial inactivation as well as activation of NF-κB signaling lead to hypertension and chronic kidney disease.; Nephrol Dial Transplant, 39: 1993-2004 |
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GSE244099 |
| Zhang, Xin et al. (2009) IFN-beta1a inhibits the secretion of Th17-polarizing cytokines in human dendritic cells via TLR7 up-regulation.; J Immunol, 182: 3928-36 |
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GSE14386 |
| Zhang, Xingli et al. (2018) Macrophage/microglial Ezh2 facilitates autoimmune inflammation through inhibition of Socs3.; J Exp Med, 215: 1365-1382 |
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GSE101316 |
| Zhang, Xiong et al. (2025) Circadian regulator REV-ERBα is a master regulator of tumor lineage plasticity and an effective therapeutic target.; Proc Natl Acad Sci U S A, 122: e2513468122 |
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GSE295834.1 |
| Zhang, Xiujuan et al. (2022) Transcriptional Repression of Aerobic Glycolysis by OVOL2 in Breast Cancer.; Adv Sci (Weinh), 9: e2200705 |
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GSE189947 |
| Zhang, Xu et al. (2024) CHD2 Regulates Neuron-Glioma Interactions in Pediatric Glioma.; Cancer Discov, 14: 1732-1754 |
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GSE211074 |