List of all 21,851 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Zhang, Xu et al. (2014) Iron deficiency modifies gene expression variation induced by augmented hypoxia sensing.; Blood Cells Mol Dis, 52: 35-45 |
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GSE40227 |
| Zhang, Xuan et al. (2024) Cockayne Syndrome Linked to Elevated R-Loops Induced by Stalled RNA Polymerase II during Transcription Elongation.; Nat Commun, 15: 6031 |
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GSE226204.1 |
| Zhang, Xuying et al. (2023) Bulk and mosaic deletions ofEgfrreveal regionally defined gliogenesis in the developing mouse forebrain.; iScience, 26: 106242 |
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GSE205624 GSE214424 |
| Zhang, Y et al. (2012) Retinoic acid and tumor necrosis factor-? induced monocytic cell gene expression is regulated in part by induction of transcription factor MafB.; Exp Cell Res, 318: 2407-16 |
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GSE28995 |
| Zhang, Ya-Qi et al. (2025) Elevated NEGR1 in brain induces anxiety or depression-like phenotypes and synaptic dysfunction.; Mol Psychiatry, 30: 4627-4640 |
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GSE292811 |
| Zhang, Yafang et al. (2016) Transcriptomics of Environmental Enrichment Reveals a Role for Retinoic Acid Signaling in Addiction.; Front Mol Neurosci, 9: 119 |
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GSE88736 |
| Zhang, Yan-Qiong et al. (2018) Molecular mechanisms of the analgesic action of Wu-tou Decoction on neuropathic pain in mice revealed using microarray and network analysis.; Acta Pharmacol Sin, 39: 988-997 |
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GSE97076 |
| Zhang, Yandong et al. (2021) Transcription factor 4 controls positioning of cortical projection neurons through regulation of cell adhesion.; Mol Psychiatry, [no vol.]: [no pages] |
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GSE166412 |
| Zhang, Yang et al. (2021) Optimized RNA-targeting CRISPR/Cas13d technology outperforms shRNA in identifying functional circRNAs.; Genome Biol, 22: 41 |
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GSE162720 |
| Zhang, Yang et al. (2023) HDAC9-mediated epithelial cell cycle arrest in G2/M contributes to kidney fibrosis in male mice.; Nat Commun, 14: 3007 |
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GSE217176 |
| Zhang, Yanghai et al. (2023) Disruption of the nuclear localization signal in RBM20 is causative in dilated cardiomyopathy.; JCI Insight, 8: [no pages] |
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GSE212799 |
| Zhang, Yangyi et al. (2024) TRIB3 inhibition by palbociclib sensitizes prostate cancer to ferroptosis via downregulating SOX2/SLC7A11 expression.; Cell Death Discov, 10: 425 |
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GSE273622 |
| Zhang, Yanli et al. (2005) Transcriptional analysis of multiple brain regions in Parkinson's disease supports the involvement of specific protein processing, energy metabolism, and signaling pathways, and suggests novel disease mechanisms.; Am J Med Genet B Neuropsychiatr Genet, 137B: 5-16 |
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GSE20168 GSE20291 GSE20292 |
| Zhang, Yanli et al. (2022) miR-124 regulates early isolation-induced social abnormalities via inhibiting myelinogenesis in the medial prefrontal cortex.; Cell Mol Life Sci, 79: 507 |
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GSE162343 |
| Zhang, Yaohua et al. (2022) Hormonal therapies up-regulate MANF and overcome female susceptibility to immune checkpoint inhibitor myocarditis.; Sci Transl Med, 14: eabo1981 |
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GSE145573 |
| Zhang, Ye et al. (2014) An RNA-sequencing transcriptome and splicing database of glia, neurons, and vascular cells of the cerebral cortex.; J Neurosci, 34: 11929-47 |
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GSE52564 |
| Zhang, Ye et al. (2016) Purification and Characterization of Progenitor and Mature Human Astrocytes Reveals Transcriptional and Functional Differences with Mouse.; Neuron, 89: 37-53 |
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GSE73721.1 GSE73721.2 |
| Zhang, Yi et al. (2009) The 76-gene signature defines high-risk patients that benefit from adjuvant tamoxifen therapy.; Breast Cancer Res Treat, 116: 303-9 |
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GSE12093 |
| Zhang, Yi et al. (2023) T-cell infiltration in the central nervous system and their association with brain calcification inSlc20a2-deficient mice.; Front Mol Neurosci, 16: 1073723 |
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GSE218335 |
| Zhang, Ying et al. (2012) USP44 regulates centrosome positioning to prevent aneuploidy and suppress tumorigenesis.; J Clin Invest, 122: 4362-74 |
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GSE40791 |
| Zhang, Ying et al. (2024) PRRC2B modulates oligodendrocyte progenitor cell development and myelination by stabilizing Sox2 mRNA.; Cell Rep, 43: 113930 |
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GSE222394 |
| Zhang, Yingjie et al. (2024) The enhancer module of Integrator controls cell identity and early neural fate commitment.; Nat Cell Biol, 27: 103-117 |
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GSE230917 |
| Zhang, Yinhua et al. (2017) Smaller Body Size, Early Postnatal Lethality, and Cortical Extracellular Matrix-Related Gene Expression Changes ofCyfip2-Null Embryonic Mice.; Front Mol Neurosci, 11: 482 |
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GSE119570 |
| Zhang, Yining et al. (2023) Transcriptomic analyses reveal proinflammatory activation of human brain microvascular endothelial cells by aging-associated peptide medin and reversal by nanoliposomes.; Sci Rep, 13: 18802 |
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GSE235915 |
| Zhang, Yiru et al. (2020) MET Inhibition Elicits PGC1α-Dependent Metabolic Reprogramming in Glioblastoma.; Cancer Res, 80: 30-43 |
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GSE134676 |
| Zhang, Yong et al. (2018) Chronic Oxycodone Self-administration Altered Reward-related Genes in the Ventral and Dorsal Striatum of C57BL/6J Mice: An RNA-seq Analysis.; Neuroscience, 393: 333-349 |
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GSE113948 |
| Zhang, Yongchun et al. (2023) Epigenetic regulation of p63 blocks squamous-to-neuroendocrine transdifferentiation in esophageal development and malignancy.; bioRxiv, [no vol.]: [no pages] |
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GSE242439 |
| Zhang, Yongchun et al. (2024) Epigenetic regulation of p63 blocks squamous-to-neuroendocrine transdifferentiation in esophageal development and malignancy.; Sci Adv, 10: eadq0479 |
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GSE242463 GSE242438 |
| Zhang, Yongguang et al. (2023) MiR-9-1 controls osteoblastic regulation of lymphopoiesis.; Leukemia, 37: 2261-2275 |
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GSE239376 |
| Zhang, Yonghua et al. (2008) Response of the adipose tissue transcriptome to dihydrotestosterone in mice.; Physiol Genomics, 35: 254-61 |
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GSE9631 |
| Zhang, Youjia et al. (2022) TIPARP is involved in the regulation of intraocular pressure.; Commun Biol, 5: 1386 |
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GSE218153 |
| Zhang, Youran R et al. (2024) Agonism of the glutamate receptor GluK2 suppresses dermal mast cell activation and cutaneous inflammation.; Sci Transl Med, 16: eadq9133 |
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GSE268986 |
| Zhang, Yu et al. (2017) Patient iPSC-Derived Neurons for Disease Modeling of Frontotemporal Dementia with Mutation in CHMP2B.; Stem Cell Reports, 8: 648-658 |
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GSE92340 |
| Zhang, Yu et al. (2022) A transcriptomic analysis of neuropathic pain in the anterior cingulate cortex after nerve injury.; Bioengineered, 13: 2058-2075 |
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GSE175760 GSE172133 |
| Zhang, Yu et al. (2022) Redondoviridae infection regulates circRNAome in periodontitis.; J Med Virol, 94: 2537-2547 |
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GSE189022 |
| Zhang, Yu et al. (2024) Identification of HSPD1 as a novel invasive biomarker associated with mitophagy in pituitary adenomas.; Transl Oncol, 41: 101886 |
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GSE260487 |
| Zhang, Yu et al. (2025) Ezetimibe Engineered L14-8 Suppresses Advanced Prostate Cancer by Activating PLK1/TP53-SAT1-Induced Ferroptosis.; Adv Sci (Weinh), 12: e04192 |
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GSE276906 |
| Zhang, Yuan et al. (2012) The starvation hormone, fibroblast growth factor-21, extends lifespan in mice.; Elife, 1: e00065 |
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GSE39313 |
| Zhang, Yuan et al. (2021) Transcriptional Network Analysis Reveals the Role of miR-223-5p During Diabetic Corneal Epithelial Regeneration.; Front Mol Biosci, 8: 737472 |
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GSE180490 |
| Zhang, Yuan et al. (2022) Microglia-specific transcriptional repression of interferon-regulated genes after prolonged stress in mice.; Neurobiol Stress, 21: 100495 |
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GSE186760 |
| Zhang, Yuan et al. (2023) Pushen capsule treatment promotes functional recovery after ischemic stroke.; Phytomedicine, 111: 154664 |
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GSE207034 |
| Zhang, Yuan et al. (2025) Migration of CD8 + TSCM cells into intestine via PPBP-CXCR2 axis increases host stress susceptibility by inhibiting gut microbiome-derived homovanillic acid.; Nat Commun, 16: 10165 |
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GSE200957 |
| Zhang, Yuanyue et al. (2020) Depletion of NK Cells Improves Cognitive Function in the Alzheimer Disease Mouse Model.; J Immunol, 205: 502-510 |
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GSE142875 |
| Zhang, Yuanyue et al. (2025) MAIT cell deficiency exacerbates neuroinflammation in P301S human tau transgenic mice.; J Neuroinflammation, 22: 90 |
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GSE285822 |
| Zhang, Yue et al. (2020) Cortical Neural Stem Cell Lineage Progression Is Regulated by Extrinsic Signaling Molecule Sonic Hedgehog.; Cell Rep, 30: 4490-4504.e4 |
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GSE138878 |
| Zhang, Yue et al. (2024) Arresting the bad seed: HDAC3 regulates proliferation of different microglia after ischemic stroke.; Sci Adv, 10: eade6900 |
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GSE220042 |
| Zhang, Yue-Zheng et al. (2011) Discovery and validation of prognostic markers in gastric cancer by genome-wide expression profiling.; World J Gastroenterol, 17: 1710-7 |
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GSE21983 |
| Zhang, Yueqi et al. (2023) Hyperpolarization-activated cyclic nucleotide-gated cation channel 3 promotes HCC development in a female-biased manner.; Cell Rep, 42: 113157 |
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GSE228531 |
| Zhang, Yufan et al. (2021) Transcriptome Analysis Reveals an Inhibitory Effect of Dihydrotestosterone-Treated 2D- and 3D-Cultured Dermal Papilla Cells on Hair Follicle Growth.; Front Cell Dev Biol, 9: 724310 |
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GSE178374 |
| Zhang, Yunmei et al. (2026) SETDB2-mediated transcriptional repression of IDE in sensory neurons promotes migraine-like pain behaviors in mice.; Cell Rep, 45: 117201 |
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GSE308023 GSE308024 |
| Zhang, Yuxiang et al. (2017) The hepatic circadian clock fine-tunes the lipogenic response to feeding through RORα/γ.; Genes Dev, 31: 1202-1211 |
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GSE101079 |
| Zhang, Yuzhen et al. (2008) A Gata6-Wnt pathway required for epithelial stem cell development and airway regeneration.; Nat Genet, 40: 862-70 |
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GSE11165 |
| Zhang, Zaikuan et al. (2025) Baicalin alleviates lipid accumulation in adipocytes via inducing metabolic reprogramming and targeting Adenosine A1 receptor.; Toxicon, 258: 108339 |
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GSE285116 |
| Zhang, Zehua et al. (2024) TRPM8 inhibits substance P release from primary sensory neurons via PKA/GSK-3beta to protect colonic epithelium in colitis.; Cell Death Dis, 15: 91 |
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GSE242559 |
| Zhang, Zengming et al. (2026) Transcriptional readthrough at Atf4 locus suppresses Rps19bp1 and impairs heart development.; Cardiovasc Res, 121: 2909-2921 |
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GSE303775 GSE303929 GSE303780 |
| Zhang, Zengyu et al. (2023) Cortex-specific transcriptome profiling reveals upregulation of interferon-regulated genes after deeper cerebral hypoperfusion in mice.; Front Physiol, 14: 1056354 |
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GSE210666 |
| Zhang, Zengyu et al. (2024) Integrated Analysis of Chromatin and Transcriptomic Profiling Identifies PU.1 as a Core Regulatory Factor in Microglial Activation Induced by Chronic Cerebral Hypoperfusion.; Mol Neurobiol, 61: 2569-2589 |
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GSE229259 |
| Zhang, Zhaoduo et al. (2007) Identification of expression patterns of IL-2-responsive genes in the murine T cell line CTLL-2.; J Interferon Cytokine Res, 27: 991-5 |
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GSE6085 |
| Zhang, Zhen et al. (2023) Submicron-Grooved Films Modulate the Directional Alignment and Biological Function of Schwann Cells.; J Funct Biomater, 14: [no pages] |
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GSE226857 |
| Zhang, Zhengwei et al. (2023) PP2Ac knockdown attenuates lipotoxicity‑induced pancreatic β‑cell dysfunction and apoptosis.; Exp Ther Med, 26: 549 |
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GSE242538 |
| Zhang, Zhenxi et al. (2008) SMN deficiency causes tissue-specific perturbations in the repertoire of snRNAs and widespread defects in splicing.; Cell, 133: 585-600 |
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GSE10599 |
| Zhang, Zhigang et al. (2025) MLKL-USP7-UBA52 signaling is indispensable for autophagy in brain through maintaining ubiquitin homeostasis.; Autophagy, 21: 424-446 |
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GSE270139 |
| Zhang, Zhihui et al. (2024) Acupuncture Extended the Thrombolysis Window by Suppressing Blood-Brain Barrier Disruption and Regulating Autophagy-Apoptosis Balance after Ischemic Stroke.; Brain Sci, 14: [no pages] |
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GSE262257 |
| Zhang, Zhuangzhi et al. (2019) Zfhx3 is required for the differentiation of late born D1-type medium spiny neurons.; Exp Neurol, 322: 113055 |
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GSE127976 |
| Zhang, Zhuangzhuang et al. (2022) Targeting Plk1 Sensitizes Pancreatic Cancer to Immune Checkpoint Therapy.; Cancer Res, 82: 3532-3548 |
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GSE189048 |
| Zhang, Zong Hong et al. (2014) A comparative study of techniques for differential expression analysis on RNA-Seq data.; PLoS One, 9: e103207 |
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GSE57440 |
| Zhao, Baicheng et al. (2024) Forebrain excitatory neuron-specific loss of Brpf1 attenuates excitatory synaptic transmission and impairs spatial and fear memory.; Neural Regen Res, 19: 1133-1141 |
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GSE212983 |
| Zhao, Bin-Bin et al. (2013) T Lymphocytes from Chronic HCV-Infected Patients Are Primed for Activation-Induced Apoptosis and Express Unique Pro-Apoptotic Gene Signature.; PLoS One, 8: e77008 |
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GSE49954 |
| Zhao, Bo et al. (2011) Epstein-Barr virus nuclear antigen 3C regulated genes in lymphoblastoid cell lines.; Proc Natl Acad Sci U S A, 108: 337-42 |
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GSE24362 |
| Zhao, Changjiu et al. (2012) Gene expression changes in the septum: possible implications for microRNAs in sculpting the maternal brain.; PLoS One, 7: e38602 |
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GSE30836 |
| Zhao, Changjiu et al. (2014) Addiction and reward-related genes show altered expression in the postpartum nucleus accumbens.; Front Behav Neurosci, 8: 388 |
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GSE62258 |
| Zhao, Changjiu et al. (2018) The circadian gene Nr1d1 in the mouse nucleus accumbens modulates sociability and anxiety-related behavior.; Eur J Neurosci, [no vol.]: [no pages] |
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GSE110363 |
| Zhao, Changjiu et al. (2020) Mu opioid receptors in the medial preoptic area govern social play behavior in adolescent male rats.; Genes Brain Behav, 19: e12662 |
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GSE148007 |
| Zhao, Chen et al. (2009) Noninvasive detection of candidate molecular biomarkers in subjects with a history of insulin resistance and colorectal adenomas.; Cancer Prev Res (Phila), 2: 590-7 |
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GSE14797 |
| Zhao, Chun-Mei et al. (2014) Denervation suppresses gastric tumorigenesis.; Sci Transl Med, 6: 250ra115 |
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GSE30295 |
| Zhao, Chuntao et al. (2018) Dual Requirement of CHD8 for Chromatin Landscape Establishment and Histone Methyltransferase Recruitment to Promote CNS Myelination and Repair.; Dev Cell, 45: 753-768.e8 |
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GSE107919.1 |
| Zhao, Dan et al. (2024) Monocytes Release Pro-Cathepsin D to Drive Blood-to-Brain Transcytosis in Diabetes.; Circ Res, 134: e17-e33 |
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GSE253502 |
| Zhao, Dan et al. (2024) Transcriptome dynamics in mouse amygdala under acute and chronic stress revealed by thiol-labeled RNA sequencing.; Neurobiol Stress, 33: 100688 |
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GSE274148 |
| Zhao, Dejian et al. (2017) Transcriptome analysis of microglia in a mouse model of Rett syndrome: differential expression of genes associated with microglia/macrophage activation and cellular stress.; Mol Autism, 8: 17 |
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GSE90736 |
| Zhao, Gang et al. (2013) Jnk1 in murine hepatic stellate cells is a crucial mediator of liver fibrogenesis.; Gut, [no vol.]: [no pages] |
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GSE40041 |
| Zhao, Guo-Kun et al. (2022) TRH Regulates the Synthesis and Secretion of Prolactin in Rats with Adenohypophysis through the Differential Expression of miR-126a-5p.; Int J Mol Sci, 23: [no pages] |
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GSE221560 |
| Zhao, Guoli et al. (2025) A High-Fidelity RNA-Targeting Cas13X Downregulates Connexin43 in Macroglia: A Novel Neuroprotective Strategy for Glaucoma.; Adv Sci (Weinh), 12: e15856 |
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GSE297955 |
| Zhao, Hong et al. (2013) Novel modeling of cancer cell signaling pathways enables systematic drug repositioning for distinct breast cancer metastases.; Cancer Res, 73: 6149-63 |
|
GSE46928 |
| Zhao, Hongyun et al. (2022) Myeloid-derived itaconate suppresses cytotoxic CD8+T cells and promotes tumour growth.; Nat Metab, 4: 1660-1673 |
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GSE190028 |
| Zhao, Houyu et al. (2024) CCR3 knockdown attenuates prolonged underwater operations-induced cognitive impairment via alleviating microglia-mediated neuroinflammation.; iScience, 27: 110379 |
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GSE247651 |
| Zhao, Hu et al. (2014) Secretion of shh by a neurovascular bundle niche supports mesenchymal stem cell homeostasis in the adult mouse incisor.; Cell Stem Cell, 14: 160-73 |
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GSE51479 |
| Zhao, Hua et al. (2012) Associations between gene expression variations and ovarian cancer risk alleles identified from genome wide association studies.; PLoS One, 7: e47962 |
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GSE37582 |
| Zhao, Huishou et al. (2025) Branched-chain amino acids contribute to diabetic kidney disease progression via PKM2-mediated podocyte metabolic reprogramming and apoptosis.; Nat Commun, 16: 7846 |
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GSE283568 |
| Zhao, Jia et al. (2024) PDX1+ cell budding morphogenesis in a stem cell-derived islet spheroid system.; Nat Commun, 15: 5894 |
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GSE249020 |
| Zhao, Jianwei et al. (2023) RNA-seq reveals Nup62 as a potential regulator for cell division after traumatic brain injury in mice hippocampus.; PeerJ, 11: e14913 |
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GSE214701 |
| Zhao, Jiaxu et al. (2024) Dura immunity configures leptomeningeal metastasis immunosuppression for cerebrospinal fluid barrier invasion.; Nat Cancer, 5: 1940-1961 |
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GSE267325 |