List of all 16,774 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Desai, Pankaj B et al. (2024) A Phase 0/I Pharmacokinetic and Pharmacodynamics and Safety and Tolerability Study of Letrozole in Combination with Standard Therapy in Recurrent High-Grade Gliomas.; Clin Cancer Res, 30: 2068-2077 |
|
GSE255754 |
| Desai, Parth et al. (2024) Microenvironment shapes small-cell lung cancer neuroendocrine states and presents therapeutic opportunities.; Cell Rep Med, 5: 101610 |
|
GSE267310 GSE267560 |
| Desai, Radha et al. (2017) ATAD3 gene cluster deletions cause cerebellar dysfunction associated with altered mitochondrial DNA and cholesterol metabolism.; Brain, 140: 1595-1610 |
|
GSE86550 |
| Desbordes, Sabrina C et al. (2008) High-throughput screening assay for the identification of compounds regulating self-renewal and differentiation in human embryonic stem cells.; Cell Stem Cell, 2: 602-12 |
|
GSE11302 |
| Descalzi, Giannina et al. (2017) Neuropathic pain promotes adaptive changes in gene expression in brain networks involved in stress and depression.; Sci Signal, 10: [no pages] |
|
GSE91396 |
| Desgeorges, Thibaut et al. (2024) Histone lactylation in macrophages is predictive for gene expression changes during ischemia induced-muscle regeneration.; Mol Metab, 83: 101923 |
|
GSE254128 |
| Deshpande, Sachin S et al. (2022) P75 neurotrophin receptor controls subventricular zone neural stem cell migration after stroke.; Cell Tissue Res, 387: 415-431 |
|
GSE152396 |
| Desiderio, Simon et al. (2019) Prdm12 Directs Nociceptive Sensory Neuron Development by Regulating the Expression of the NGF Receptor TrkA.; Cell Rep, 26: 3522-3536.e5 |
|
GSE118187 |
| Desiderio, Simon et al. (2024) Touch receptor end-organ innervation and function require sensory neuron expression of the transcription factor Meis2.; Elife, 12: [no pages] |
|
GSE223788 |
| Desimone, Michelle C et al. (2013) Pleiotropic effects of the trichloroethylene-associated P81S VHL mutation on metabolism, apoptosis, and ATM-mediated DNA damage response.; J Natl Cancer Inst, [no vol.]: [no pages] |
|
GSE37464 |
| DeSisto, John et al. (2025) PRMT5 Maintains Tumor Stem Cells to Promote Pediatric High-Grade Glioma Tumorigenesis.; Mol Cancer Res, 23: 107-118 |
|
GSE261512 |
| Desjardins, Cody A et al. (2017) Antagonistic regulation of cell-cycle and differentiation gene programs in neonatal cardiomyocytes by homologous MEF2 transcription factors.; J Biol Chem, 292: 10613-10629 |
|
GSE92861 |
| Desmedt, Christine et al. (2007) Strong time dependence of the 76-gene prognostic signature for node-negative breast cancer patients in the TRANSBIG multicenter independent validation series.; Clin Cancer Res, 13: 3207-14 |
|
GSE7390 |
| Desmedt, Christine et al. (2009) The Gene expression Grade Index: a potential predictor of relapse for endocrine-treated breast cancer patients in the BIG 1-98 trial.; BMC Med Genomics, 2: 40 |
|
GSE16391 |
| Desmedt, Christine et al. (2012) Characterization and clinical evaluation of CD10+ stroma cells in the breast cancer microenvironment.; Clin Cancer Res, 18: 1004-14 |
|
GSE27120 |
| Desoteux, Matthis et al. (2023) Transcriptomic evidence for tumor-specific beneficial or adverse effects of TGFβ pathway inhibition on the prognosis of patients with liver cancer.; FEBS Open Bio, 13: 1278-1290 |
|
GSE211806 |
| Desu, Haritha L et al. (2021) TNFR2 Signaling Regulates the Immunomodulatory Function of Oligodendrocyte Precursor Cells.; Cells, 10: [no pages] |
|
GSE78082 GSE180604 |
| Detwiller, Kara Y et al. (2005) Analysis of hypoxia-related gene expression in sarcomas and effect of hypoxia on RNA interference of vascular endothelial cell growth factor A.; Cancer Res, 65: 5881-9 |
|
GSE2719 |
| Deutschman, Emily et al. (2019) Condensin II protein dysfunction impacts mitochondrial respiration and mitochondrial oxidative stress responses.; J Cell Sci, 132: [no pages] |
|
GSE139540 |
| DeVeaux, S'Dravious A et al. (2024) Neuroinflammation underlies the development of social stress induced cognitive deficit in male sickle cell mice.; Exp Biol Med (Maywood), 249: 10361 |
|
GSE252778 |
| Devereaux, Jeannie et al. (2024) Alterations in tryptophan metabolism andde novoNAD+biosynthesis within the microbiota-gut-brain axis in chronic intestinal inflammation.; Front Med (Lausanne), 11: 1379335 |
|
GSE264317 |
| Deveson, Ira W et al. (2018) Universal Alternative Splicing of Noncoding Exons.; Cell Syst, 6: 245-255.e5 |
|
GSE99637.2 GSE99637.1 |
| Devignot, Stéphanie et al. (2010) Genome-wide expression profiling deciphers host responses altered during dengue shock syndrome and reveals the role of innate immunity in severe dengue.; PLoS One, 5: e11671 |
|
GSE17924 |
| Devine, Michael J et al. (2011) Parkinson's disease induced pluripotent stem cells with triplication of the ?-synuclein locus.; Nat Commun, 2: 440 |
|
GSE28365 |
| Devine, W Patrick et al. (2014) Early patterning and specification of cardiac progenitors in gastrulating mesoderm.; Elife, 3: [no pages] |
|
GSE58363 |
| Devjak, Rok et al. (2012) Cumulus cells gene expression profiling in terms of oocyte maturity in controlled ovarian hyperstimulation using GnRH agonist or GnRH antagonist.; PLoS One, 7: e47106 |
|
GSE34230 |
| Devraj, Gayatri et al. (2020) HIF-1α is involved in blood-brain barrier dysfunction and paracellular migration of bacteria in pneumococcal meningitis.; Acta Neuropathol, 140: 183-208 |
|
GSE122952 |
| Dewa, Ken-Ichi et al. (2024) Neuronal DSCAM regulates the peri-synaptic localization of GLAST in Bergmann glia for functional synapse formation.; Nat Commun, 15: 458 |
|
GSE190010 |
| Dey, Joyoti et al. (2013) MyoD is a tumor suppressor gene in medulloblastoma.; Cancer Res, 73: 6828-37 |
|
GSE51219 |
| Dey, Partha Narayan et al. (2025) Loss of paired immunoglobin-like type 2 receptor B gene associated with age-related macular degeneration impairs photoreceptor function in mouse retina.; Hum Mol Genet, 34: 64-76 |
|
GSE264349 |
| Dey, Swagata et al. (2023) Kinesin family member 2A gates nociception.; Cell Rep, 42: 113257 |
|
GSE222925 |
| DeZwaan-McCabe, Diane et al. (2013) The stress-regulated transcription factor CHOP promotes hepatic inflammatory gene expression, fibrosis, and oncogenesis.; PLoS Genet, 9: e1003937 |
|
GSE51188 |
| Dhadialla, Prabhjot S et al. (2009) Maximum-entropy network analysis reveals a role for tumor necrosis factor in peripheral nerve development and function.; Proc Natl Acad Sci U S A, 106: 12494-9 |
|
GSE16729 |
| Dhahbi, Joseph M et al. (2005) Identification of potential caloric restriction mimetics by microarray profiling.; Physiol Genomics, 23: 343-50 |
|
GSE2431 |
| Dhakal, Pramod et al. (2021) Fetal Brain Elicits Sexually Conflicting Transcriptional Response to the Ablation of Uterine Forkhead Box A2 (Foxa2) in Mice.; Int J Mol Sci, 22: [no pages] |
|
GSE157555 |
| Dhanasekaran, S M et al. (2001) Delineation of prognostic biomarkers in prostate cancer.; Nature, 412: 822-6 |
|
dhanasekaran-prostate |
| Dhanya, Sreeja Kumari et al. (2021) Purkinje Neurons with Loss of STIM1 Exhibit Age-Dependent Changes in Gene Expression and Synaptic Components.; J Neurosci, 41: 3777-3798 |
|
GSE158513 |
| Dharaskar, Shrikant Purushottam et al. (2023) Analysis and functional relevance of the chaperone TRAP-1 interactome in the metabolic regulation and mitochondrial integrity of cancer cells.; Sci Rep, 13: 7584 |
|
GSE229114 |
| Dhasarathy, Archana et al. (2011) The transcription factors Snail and Slug activate the transforming growth factor-beta signaling pathway in breast cancer.; PLoS One, 6: e26514 |
|
GSE29672 |
| Dhingra, Anuradha et al. (2023) Transcriptomic Changes Predict Metabolic Alterations in LC3 Associated Phagocytosis in Aged Mice.; Int J Mol Sci, 24: [no pages] |
|
GSE225344 |
| Dhir, Ashish et al. (2015) Microprocessor mediates transcriptional termination of long noncoding RNA transcripts hosting microRNAs.; Nat Struct Mol Biol, 22: 319-27 |
|
GSE58838 |
| Dhodapkar, Kavita M et al. (2007) Selective blockade of the inhibitory Fcgamma receptor (FcgammaRIIB) in human dendritic cells and monocytes induces a type I interferon response program.; J Exp Med, [no vol.]: [no pages] |
|
GSE7509 |
| Dhungel, Nilu et al. (2023) Assessing the epithelial-to-mesenchymal plasticity in a small cell lung carcinoma (SCLC) and lung fibroblasts co-culture model.; Front Mol Biosci, 10: 1096326 |
|
GSE224873 |
| Di Camillo, Barbara et al. (2012) Function-based discovery of significant transcriptional temporal patterns in insulin stimulated muscle cells.; PLoS One, 7: e32391 |
|
GSE28997 |
| Di Cello, Francescopaolo et al. (2013) Methylation of the claudin 1 promoter is associated with loss of expression in estrogen receptor positive breast cancer.; PLoS One, 8: e68630 |
|
GSE44836 |
| Di Chiaro, Pierluigi et al. (2024) Mapping functional to morphological variation reveals the basis of regional extracellular matrix subversion and nerve invasion in pancreatic cancer.; Cancer Cell, 42: 662-681.e10 |
|
GSE243583 GSE243584 GSE208732 |
| di Domenico, Angelique et al. (2019) Patient-Specific iPSC-Derived Astrocytes Contribute to Non-Cell-Autonomous Neurodegeneration in Parkinson's Disease.; Stem Cell Reports, 12: 213-229 |
|
GSE116124 |
| Di Giorgio, Eros et al. (2017) The co-existence of transcriptional activator and transcriptional repressor MEF2 complexes influences tumor aggressiveness.; PLoS Genet, 13: e1006752 |
|
GSE94416 |
| Di Giorgio, Eros et al. (2020) Different class IIa HDACs repressive complexes regulate specific epigenetic responses related to cell survival in leiomyosarcoma cells.; Nucleic Acids Res, 48: 646-664 |
|
GSE132569 |
| Di Giorgio, Eros et al. (2023) Suppression of theKRAS-NRF2axis shifts arginine into the phosphocreatine energy system in pancreatic cancer cells.; iScience, 26: 108566 |
|
GSE217965 |
| Di Giorgio, Eros et al. (2024) The central role of creatine and polyamines in fetal growth restriction.; FASEB J, 38: e70222 |
|
GSE262116 |
| Di Giorgio, Francesco Paolo et al. (2008) Human embryonic stem cell-derived motor neurons are sensitive to the toxic effect of glial cells carrying an ALS-causing mutation.; Cell Stem Cell, 3: 637-48 |
|
GSE13643 |
| Di Liberto, Giovanni et al. [Unknown date]Neurons under T Cell Attack Coordinate Phagocyte-Mediated Synaptic Stripping.; Cell, 175: 458-471.e19 |
|
GSE110593 |
| Di Lucente, Jacopo et al. (2024) Ketogenic diet and BHB rescue the fall of long-term potentiation in an Alzheimer's mouse model and stimulates synaptic plasticity pathway enzymes.; Commun Biol, 7: 195 |
|
GSE230469 |
| Di Meglio, Paola et al. (2014) Activation of the aryl hydrocarbon receptor dampens the severity of inflammatory skin conditions.; Immunity, 40: 989-1001 |
|
GSE47944 |
| Di Nunzio, Giada et al. (2024) Kupffer cells dictate hepatic responses to the atherogenic dyslipidemic insult.; Nat Cardiovasc Res, 3: 356-371 |
|
GSE254879 |
| Di Padova, Monica et al. (2007) MyoD acetylation influences temporal patterns of skeletal muscle gene expression.; J Biol Chem, 282: 37650-9 |
|
GSE6487 |
| di Pietro, Massimiliano et al. (2012) Evidence for a functional role of epigenetically regulated midcluster HOXB genes in the development of Barrett esophagus.; Proc Natl Acad Sci U S A, 109: 9077-82 |
|
GSE34619 |
| Di Rienzi, Sara C et al. (2025) Limosilactobacillus reuteri promotes the expression and secretion of enteroendocrine- and enterocyte-derived hormones.; FASEB J, 39: e70408 |
|
GSE268681 |
| Di Timoteo, Gaia et al. (2024) M6A reduction relieves FUS-associated ALS granules.; Nat Commun, 15: 5033 |
|
GSE242766 |
| Di Tullio, Alessandro et al. (2011) CCAAT/enhancer binding protein alpha (C/EBP(alpha))-induced transdifferentiation of pre-B cells into macrophages involves no overt retrodifferentiation.; Proc Natl Acad Sci U S A, 108: 17016-21 |
|
GSE14833 |
| Di Vona, Chiara et al. (2023) Loss of the DYRK1A Protein Kinase Results in the Reduction in Ribosomal Protein Gene Expression, Ribosome Mass and Reduced Translation.; Biomolecules, 14: [no pages] |
|
GSE155808 |
| Diacou, Raven et al. [Unknown date]Six3 and Six6 Are Jointly Required for the Maintenance of Multipotent Retinal Progenitors through Both Positive and Negative Regulation.; Cell Rep, 25: 2510-2523.e4 |
|
GSE115258 |
| Dial, Athan G et al. (2021) Alterations in skeletal muscle repair in young adults with type 1 diabetes mellitus.; Am J Physiol Cell Physiol, 321: C876-C883 |
|
GSE182494 |
| Dias, David Oliveira et al. (2018) Reducing Pericyte-Derived Scarring Promotes Recovery after Spinal Cord Injury.; Cell, 173: 153-165.e22 |
|
GSE93976 |
| Dias, Rodrigo Gonçalves et al. (2015) PBMCs express a transcriptome signature predictor of oxygen uptake responsiveness to endurance exercise training in men.; Physiol Genomics, 47: 13-23 |
|
GSE57999 |
| Diaz, Jennifer El et al. (2020) The transcriptomic response of cells to a drug combination is more than the sum of the responses to the monotherapies.; Elife, 9: [no pages] |
|
GSE149428 |
| Diaz, Jenny R et al. (2022) Apolipoprotein E4 Effects a Distinct Transcriptomic Profile and Dendritic Arbor Characteristics in Hippocampal Neurons Culturedin vitro.; Front Aging Neurosci, 14: 845291 |
|
GSE193162 |
| Diaz, Roberto Jose et al. (2015) Mechanism of action and therapeutic efficacy of Aurora kinase B inhibition in MYC overexpressing medulloblastoma.; Oncotarget, 6: 3359-74 |
|
GSE159385 |
| Diaz-Aparicio, Irune et al. (2020) Microglia Actively Remodel Adult Hippocampal Neurogenesis through the Phagocytosis Secretome.; J Neurosci, 40: 1453-1482 |
|
GSE129569 |
| Diaz-Blanco, E et al. (2007) Molecular signature of CD34(+) hematopoietic stem and progenitor cells of patients with CML in chronic phase.; Leukemia, 21: 494-504 |
|
GSE5550 |
| Diaz-Bulnes, Paula et al. (2024) Inhibition of BRD4 Attenuates ER Stress-induced Renal Ischemic-Reperfusion Injury.; Int J Biol Sci, 20: 1547-1562 |
|
GSE217103 |
| Diaz-Castro, Blanca et al. (2021) Molecular and functional properties of cortical astrocytes during peripherally induced neuroinflammation.; Cell Rep, 36: 109508 |
|
GSE135110 |
| Diaz-Castro, Blanca et al. [Unknown date]Astrocyte molecular signatures in Huntington's disease.; Sci Transl Med, 11: [no pages] |
|
GSE124846 |
| Diaz-Jimenez, David et al. (2020) Glucocorticoids mobilize macrophages by transcriptionally up-regulating the exopeptidase DPP4.; J Biol Chem, 295: 3213-3227 |
|
GSE135130 |
| Diaz-Ortiz, Maria E et al. (2022) GPNMB confers risk for Parkinson's disease through interaction with α-synuclein.; Science, 377: eabk0637 |
|
GSE206327 |
| DiCarlo, Lisa M et al. (2017) The stability of the transcriptome during the estrous cycle in four regions of the mouse brain.; J Comp Neurol, 525: 3360-3387 |
|
GSE96700 |
| Dickel, Diane E et al. (2018) Ultraconserved Enhancers Are Required for Normal Development.; Cell, 172: 491-499.e15 |
|
GSE97321 |
| Dickey, Audrey S et al. (2016) PPAR-δ is repressed in Huntington's disease, is required for normal neuronal function and can be targeted therapeutically.; Nat Med, 22: 37-45 |
|
GSE74583 |
| Dickison, Virginia M et al. (2012) A role for prenylated rab acceptor 1 in vertebrate photoreceptor development.; BMC Neurosci, 13: 152 |
|
GSE41821 |
| Dickson, Elna et al. (2022) Microarray profiling of hypothalamic gene expression changes in Huntington's disease mouse models.; Front Neurosci, 16: 1027269 |
|
GSE215217 |
| Dieckmann, Linda et al. (2020) Stress genomics revisited: gene co-expression analysis identifies molecular signatures associated with childhood adversity.; Transl Psychiatry, 10: 34 |
|
GSE70603 |
| Diehn, Jennifer J et al. (2005) Differential gene expression in anatomical compartments of the human eye.; Genome Biol, 6: R74 |
|
GSE3023 |
| Diehn, Maximilian et al. (2002) Genomic expression programs and the integration of the CD28 costimulatory signal in T cell activation.; Proc Natl Acad Sci U S A, 99: 11796-801 |
|
GSE3630 |
| Diener, Caroline et al. (2023) Time-resolved RNA signatures of CD4+ T cells in Parkinson's disease.; Cell Death Discov, 9: 18 |
|
GSE202665 |
| Diener, Caroline et al. (2024) Paving the way to a neural fate - RNA signatures in naive and trans-differentiating mesenchymal stem cells.; Eur J Cell Biol, 103: 151458 |
|
GSE253566 |
| Diep, Caroline H et al. (2016) Active FOXO1 Is a Key Determinant of Isoform-Specific Progesterone Receptor Transactivation and Senescence Programming.; Mol Cancer Res, 14: 141-62 |
|
GSE69294 GSE69295 |
| Diersch, Sandra et al. (2013) Efemp1 and p27(Kip1) modulate responsiveness of pancreatic cancer cells towards a dual PI3K/mTOR inhibitor in preclinical models.; Oncotarget, 4: 277-88 |
|
GSE40609 |
| Dierssen, Mara et al. (2012) Reduced Mid1 Expression and Delayed Neuromotor Development in daDREAM Transgenic Mice.; Front Mol Neurosci, 5: 58 |
|
GSE34765 |
| Dieterich, Christine et al. (2009) Gene expression analysis reveals new possible mechanisms of vancomycin-induced nephrotoxicity and identifies gene markers candidates.; Toxicol Sci, 107: 258-69 |
|
GSE7793 |
| Dietmair, Stefanie et al. (2012) A multi-omics analysis of recombinant protein production in Hek293 cells.; PLoS One, 7: e43394 |
|
GSE36094 |
| Diéguez-Hurtado, Rodrigo et al. [Unknown date]Loss of the transcription factor RBPJ induces disease-promoting properties in brain pericytes.; Nat Commun, 10: 2817 |
|
GSE117083 |
| Díaz, Tania et al. (2017) The BET bromodomain inhibitor CPI203 improves lenalidomide and dexamethasone activity inin vitroandin vivomodels of multiple myeloma by blockade of Ikaros and MYC signaling.; Haematologica, 102: 1776-1784 |
|
GSE87403 |
| Díaz-Carballo, David et al. (2024) The neuroepithelial origin of ovarian carcinomas explained through an epithelial-mesenchymal-ectodermal transition enhanced by cisplatin.; Sci Rep, 14: 29286 |
|
GSE264296 |