List of all 16,774 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Doi, Hiroyoshi et al. (2021) Early-life midazolam exposure persistently changes chromatin accessibility to impair adult hippocampal neurogenesis and cognition.; Proc Natl Acad Sci U S A, 118: [no pages] |
|
GSE166322 |
| Doi, Toru et al. [Unknown date]Chd7 Collaborates with Sox2 to Regulate Activation of Oligodendrocyte Precursor Cells after Spinal Cord Injury.; J Neurosci, 37: 10290-10309 |
|
GSE95347 |
| Doktorova, Tatyana Y et al. (2012) Comparison of hepatocarcinogen-induced gene expression profiles in conventional primary rat hepatocytes with in vivo rat liver.; Arch Toxicol, 86: 1399-411 |
|
GSE36524 |
| Dolan, Melissa et al. (2019) Enhanced efficacy of sitravatinib in metastatic models of antiangiogenic therapy resistance.; PLoS One, 14: e0220101 |
|
GSE122821 GSE122820 |
| Dolatshad, H et al. (2015) Disruption of SF3B1 results in deregulated expression and splicing of key genes and pathways in myelodysplastic syndrome hematopoietic stem and progenitor cells.; Leukemia, 29: 1092-103 |
|
GSE63569 |
| Dolinay, Tamás et al. (2012) Inflammasome-regulated cytokines are critical mediators of acute lung injury.; Am J Respir Crit Care Med, 185: 1225-34 |
|
GSE32707 |
| Dom, G et al. (2012) A gene expression signature distinguishes normal tissues of sporadic and radiation-induced papillary thyroid carcinomas.; Br J Cancer, 107: 994-1000 |
|
GSE29265 |
| Dombroski, Beth A et al. (2010) Gene expression and genetic variation in response to endoplasmic reticulum stress in human cells.; Am J Hum Genet, 86: 719-29 |
|
GSE19519 |
| Domingo-Muelas, Ana et al. (2023) The rates of adult neurogenesis and oligodendrogenesis are linked to cell cycle regulation through p27-dependent gene repression of SOX2.; Cell Mol Life Sci, 80: 36 |
|
GSE196328 |
| Domingo-Rodriguez, Laura et al. [Unknown date]A specific prelimbic-nucleus accumbens pathway controls resilience versus vulnerability to food addiction.; Nat Commun, 11: 782 |
|
GSE139482 |
| Dominguez, Sara L et al. (2023) TMEM106B reduction does not rescue GRN deficiency in iPSC-derived human microglia and mouse models.; iScience, 26: 108362 |
|
GSE237104 GSE237106 GSE237105 |
| Dominguez-Sola, David et al. (2012) The proto-oncogene MYC is required for selection in the germinal center and cyclic reentry.; Nat Immunol, 13: 1083-91 |
|
GSE38304 |
| Dominissini, Dan et al. (2012) Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq.; Nature, 485: 201-6 |
|
GSE37005.3.1 GSE37005.3.2 |
| Domowicz, Miriam S et al. (2019) Global Brain Transcriptome Analysis of a Tpp1 Neuronal Ceroid Lipofuscinoses Mouse Model.; ASN Neuro, 11: 1759091419843393 |
|
GSE123509 |
| Domowicz, Miriam S et al. (2021) Brain transcriptome analysis of a CLN2 mouse model as a function of disease progression.; J Neuroinflammation, 18: 262 |
|
GSE173665 |
| Domínguez, Kristen et al. (2023) Group B Streptococcus Drives Major Transcriptomic Changes in the Colonic Epithelium.; Infect Immun, 91: e0003523 |
|
GSE230856 |
| Donakonda, Sainitin et al. (2017) System analysis identifies distinct and common functional networks governed by transcription factor ASCL1, in glioma and small cell lung cancer.; Mol Biosyst, 13: 1481-1494 |
|
GSE76652 |
| Donarum, Elizabeth A et al. (2006) Cognitive dysfunction in NF1 knock-out mice may result from altered vesicular trafficking of APP/DRD3 complex.; BMC Neurosci, 7: 22 |
|
GSE1482 |
| Donarum, Elizabeth A et al. (2006) Expression profiling reveals multiple myelin alterations in murine succinate semialdehyde dehydrogenase deficiency.; J Inherit Metab Dis, 29: 143-56 |
|
GSE2866 |
| Donati, Giulio et al. (2022) Targeting mitochondrial respiration and the BCL2 family in high-grade MYC-associated B-cell lymphoma.; Mol Oncol, 16: 1132-1152 |
|
GSE149073 |
| Donega, Vanessa et al. [Unknown date]Transcriptome and proteome profiling of neural stem cells from the human subventricular zone in Parkinson's disease.; Acta Neuropathol Commun, 7: 84 |
|
GSE130752 |
| Donegan, Jennifer J et al. (2020) Developmental alterations in the transcriptome of three distinct rodent models of schizophrenia.; PLoS One, 15: e0232200 |
|
GSE149828 |
| Dong, Chen et al. (2022) Conserved and Distinct Functions of the Autism-Related Chromatin Remodeler CHD8 in Embryonic and Adult Forebrain Neurogenesis.; J Neurosci, 42: 8373-8392 |
|
GSE148608 |
| Dong, Daoyuan et al. (2024) Poly-GR repeats associated with ALS/FTD geneC9ORF72impair translation elongation and induce a ribotoxic stress response in neurons.; Sci Signal, 17: eadl1030 |
|
GSE230127 |
| Dong, Hongquan et al. (2024) Enhanced meningeal lymphatic drainage ameliorates lipopolysaccharide-induced brain injury in aged mice.; J Neuroinflammation, 21: 36 |
|
GSE247222 |
| Dong, Hongyan et al. (2015) Transient Maternal Hypothyroxinemia Potentiates the Transcriptional Response to Exogenous Thyroid Hormone in the Fetal Cerebral Cortex Before the Onset of Fetal Thyroid Function: A Messenger and MicroRNA Profiling Study.; Cereb Cortex, 25: 1735-45 |
|
GSE43927 |
| Dong, Jie et al. (2011) c-Myc regulates self-renewal in bronchoalveolar stem cells.; PLoS One, 6: e23707 |
|
GSE30323 |
| Dong, Jie et al. (2012) MicroRNA-mRNA interactions in a murine model of hyperoxia-induced bronchopulmonary dysplasia.; BMC Genomics, 13: 204 |
|
GSE25286 |
| Dong, Qing et al. (2023) Mutant β1-adrenergic receptor improves REM sleep and ameliorates tau accumulation in a mouse model of tauopathy.; Proc Natl Acad Sci U S A, 120: e2221686120 |
|
GSE205558 |
| Dong, Suzhen et al. (2012) Curcumin enhances neurogenesis and cognition in aged rats: implications for transcriptional interactions related to growth and synaptic plasticity.; PLoS One, 7: e31211 |
|
GSE33137 |
| Dong, Xianjun et al. (2023) Circular RNAs in the human brain are tailored to neuron identity and neuropsychiatric disease.; bioRxiv, [no vol.]: [no pages] |
|
GSE218203.2 |
| Dong, Xiaotao et al. (2022) YY1 safeguard multidimensional epigenetic landscape associated with extended pluripotency.; Nucleic Acids Res, 50: 12019-12038 |
|
GSE157720.1 GSE157720.2 |
| Dong, Xiaoxiang et al. (2022) Metabolic lactate production coordinates vasculature development and progenitor behavior in the developing mouse neocortex.; Nat Neurosci, 25: 865-875 |
|
GSE201991 |
| Dong, Xiaoxue et al. (2023) Ogt-mediated O-GlcNAcylation inhibits astrocytes activation through modulating NF-κB signaling pathway.; J Neuroinflammation, 20: 146 |
|
GSE169347 |
| Dong, Xuhui et al. (2020) LIM-Homeodomain Transcription Factor LHX4 Is Required for the Differentiation of Retinal Rod Bipolar Cells and OFF-Cone Bipolar Subtypes.; Cell Rep, 32: 108144 |
|
GSE127771 GSE126942 |
| Dong, Zhen et al. (2019) Targeting Glioblastoma Stem Cells through Disruption of the Circadian Clock.; Cancer Discov, 9: 1556-1573 |
|
GSE134973 |
| Dong, Zhen et al. (2025) A mutant ASXL1-BAP1-EHMT complex contributes to heterochromatin dysfunction in clonal hematopoiesis and chronic monomyelocytic leukemia.; Proc Natl Acad Sci U S A, 122: e2413302121 |
|
GSE274878 |
| Donovan, Johnny et al. (2023) Improving anti-tumor efficacy of low-dose Vincristine in rhabdomyosarcomaviathe combination therapy with FOXM1 inhibitor RCM1.; Front Oncol, 13: 1112859 |
|
GSE223149 |
| Donovan, Lauren J et al. [Unknown date]Lmx1b is required at multiple stages to build expansive serotonergic axon architectures.; Elife, 8: [no pages] |
|
GSE130514 |
| Donovan, Micah G et al. (2024) Multimodal analysis of dysregulated heme metabolism, hypoxic signaling, and stress erythropoiesis in Down syndrome.; Cell Rep, 43: 114599 |
|
GSE272568 |
| Donson, Andrew M et al. (2012) Increased immune gene expression and immune cell infiltration in high-grade astrocytoma distinguish long-term from short-term survivors.; J Immunol, 189: 1920-7 |
|
GSE33331 |
| Donson, Andrew M et al. (2023) Significant increase of high-risk chromosome 1q gain and 6q loss at recurrence in posterior fossa group A ependymoma: a multicenter study.; Neuro Oncol, [no vol.]: [no pages] |
|
GSE226957 |
| Doostparast Torshizi, Abolfazl et al. [Unknown date]Deconvolution of transcriptional networks identifies TCF4 as a master regulator in schizophrenia.; Sci Adv, 5: eaau4139 |
|
GSE128333 |
| Doran, Ciara G et al. (2021) CRISPR/Cas9-mediated SARM1 knockout and epitope-tagged mice reveal that SARM1 does not regulate nuclear transcription, but is expressed in macrophages.; J Biol Chem, 297: 101417 |
|
GSE182091 |
| Dorfman, Mauricio D et al. (2023) Central androgen action reverses hypothalamic astrogliosis and atherogenic risk factors induced by orchiectomy and high-fat diet feeding in male mice.; Am J Physiol Endocrinol Metab, 324: E461-E475 |
|
GSE214683 |
| Dorn, Gerald W (2016) Central Parkin: The evolving role of Parkin in the heart.; Biochim Biophys Acta, 1857: 1307-1312 |
|
GSE74517 |
| Dornan, David et al. (2009) Therapeutic potential of an anti-CD79b antibody-drug conjugate, anti-CD79b-vc-MMAE, for the treatment of non-Hodgkin lymphoma.; Blood, 114: 2721-9 |
|
GSE15329 |
| Doron-Mandel, Ella et al. (2021) The glycine arginine-rich domain of the RNA-binding protein nucleolin regulates its subcellular localization.; EMBO J, 40: e107158 |
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GSE142099 GSE142096 GSE142107 |
| Dorrier, Cayce E et al. (2021) CNS fibroblasts form a fibrotic scar in response to immune cell infiltration.; Nat Neurosci, 24: 234-244 |
|
GSE135044 |
| Dorrity, Tyler J et al. (2023) Long 3'UTRs predispose neurons to inflammation by promoting immunostimulatory double-stranded RNA formation.; Sci Immunol, 8: eadg2979 |
|
GSE214949 |
| Dort, Junio et al. (2023) Gpr18 agonist dampens inflammation, enhances myogenesis, and restores muscle function in models of Duchenne muscular dystrophy.; Front Cell Dev Biol, 11: 1187253 |
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GSE222773 |
| Dorval, Véronique et al. (2014) Gene and MicroRNA transcriptome analysis of Parkinson's related LRRK2 mouse models.; PLoS One, 9: e85510 |
|
GSE52584.2 |
| Dos Santos Guilherme, Malena et al. (2021) N6-Methyladenosine Modification in Chronic Stress Response Due to Social Hierarchy Positioning of Mice.; Front Cell Dev Biol, 9: 705986 |
|
GSE161198 |
| dos Santos, C C et al. (2004) DNA microarray analysis of gene expression in alveolar epithelial cells in response to TNFalpha, LPS, and cyclic stretch.; Physiol Genomics, 19: 331-42 |
|
GSE1541 |
| dos Santos, Claudia C et al. (2010) Sepsis-induced myocardial depression is associated with transcriptional changes in energy metabolism and contractile related genes: a physiological and gene expression-based approach.; Crit Care Med, 38: 894-902 |
|
GSE9667.1 |
| Dou, Xiaoyang et al. [Unknown date]The strand-biased mitochondrial DNA methylome and its regulation by DNMT3A.; Genome Res, 29: 1622-1634 |
|
GSE133965 |
| Dou, Xuefeng et al. (2023) PDK4-dependent hypercatabolism and lactate production of senescent cells promotes cancer malignancy.; Nat Metab, 5: 1887-1910 |
|
GSE198110 |
| Doucet-O'Hare, Tara T et al. (2021) SMARCB1 deletion in atypical teratoid rhabdoid tumors results in human endogenous retrovirus K (HML-2) expression.; Sci Rep, 11: 12893 |
|
GSE124210 |
| Dougherty, Edward J et al. (2023) Inflammation and DKK1-induced AKT activation contribute to endothelial dysfunction following NR2F2 loss.; Am J Physiol Lung Cell Mol Physiol, 324: L783-L798 |
|
GSE188467 GSE188466 |
| Dougherty, Joseph D et al. (2010) Analytical approaches to RNA profiling data for the identification of genes enriched in specific cells.; Nucleic Acids Res, 38: 4218-30 |
|
GSE13379 |
| Dougherty, Joseph D et al. (2013) The disruption of Celf6, a gene identified by translational profiling of serotonergic neurons, results in autism-related behaviors.; J Neurosci, 33: 2732-53 |
|
GSE36068 |
| Doulatov, Sergei et al. (2013) Induction of multipotential hematopoietic progenitors from human pluripotent stem cells via respecification of lineage-restricted precursors.; Cell Stem Cell, 13: 459-70 |
|
GSE49938 |
| Doumandji, Zahra et al. (2020) Protein and lipid homeostasis altered in rat macrophages after exposure to metallic oxide nanoparticles.; Cell Biol Toxicol, 36: 65-82 |
|
GSE97852 |
| Douvaras, Panagiotis et al. (2024) Ready-to-use iPSC-derived microglia progenitors for the treatment of CNS disease in mouse models of neuropathic mucopolysaccharidoses.; Nat Commun, 15: 8132 |
|
GSE222969 |
| Douvaras, Panagiotis et al. [Unknown date]Directed Differentiation of Human Pluripotent Stem Cells to Microglia.; Stem Cell Reports, 8: 1516-1524 |
|
GSE97744 |
| Dow, Geoffrey S (2003) Effect of sample size and P-value filtering techniques on the detection of transcriptional changes induced in rat neuroblastoma (NG108) cells by mefloquine.; Malar J, 2: 4 |
|
GSE39 |
| Dow, Lukas E et al. (2015) Apc Restoration Promotes Cellular Differentiation and Reestablishes Crypt Homeostasis in Colorectal Cancer.; Cell, 161: 1539-52 |
|
GSE67186 |
| Dowdle, James A et al. (2013) Mouse BAZ1A (ACF1) is dispensable for double-strand break repair but is essential for averting improper gene expression during spermatogenesis.; PLoS Genet, 9: e1003945 |
|
GSE41303 |
| Dower, Ken et al. (2008) Innate immune responses to TREM-1 activation: overlap, divergence, and positive and negative cross-talk with bacterial lipopolysaccharide.; J Immunol, 180: 3520-34 |
|
GSE9988 |
| Doyard, M et al. (2012) Iron excess limits HHIPL-2 gene expression and decreases osteoblastic activity in human MG-63 cells.; Osteoporos Int, 23: 2435-45 |
|
GSE30774 |
| Doyle, Daniel Z et al. (2021) Chromatin remodelerArid1aregulates subplate neuron identity and wiring of cortical connectivity.; Proc Natl Acad Sci U S A, 118: [no pages] |
|
GSE163273 |
| Doyle, K R et al. (2012) Validating a gene expression signature proposed to differentiate liposarcomas that use different telomere maintenance mechanisms.; Oncogene, 31: 265-6; author reply 267-8 |
|
GSE20559 |
| Doyle, William J et al. (2023) Farnesol brain transcriptomics in CNS inflammatory demyelination.; Clin Immunol, 255: 109752 |
|
GSE233583 |
| Dozmorov, Igor et al. (2013) Evidence of dynamically dysregulated gene expression pathways in hyperresponsive B cells from African American lupus patients.; PLoS One, 8: e71397 |
|
GSE37573 |
| Drabek, Ksenija et al. (2011) GPM6B regulates osteoblast function and induction of mineralization by controlling cytoskeleton and matrix vesicle release.; J Bone Miner Res, 26: 2045-51 |
|
GSE26004 |
| Draganova, Kalina et al. (2015) Wnt/?-catenin signaling regulates sequential fate decisions of murine cortical precursor cells.; Stem Cells, 33: 170-82 |
|
GSE70134 |
| Drake, Jennifer I et al. (2013) Chronic carvedilol treatment partially reverses the right ventricular failure transcriptional profile in experimental pulmonary hypertension.; Physiol Genomics, 45: 449-61 |
|
GSE42579 |
| Drake, Wonder P et al. (2013) Oral antimycobacterial therapy in chronic cutaneous sarcoidosis: a randomized, single-masked, placebo-controlled study.; JAMA Dermatol, 149: 1040-9 |
|
GSE39606 |
| Draper, Julia E et al. (2016) RUNX1B Expression Is Highly Heterogeneous and Distinguishes Megakaryocytic and Erythroid Lineage Fate in Adult Mouse Hematopoiesis.; PLoS Genet, 12: e1005814 |
|
GSE68958 |
| Drayton, Ross M et al. (2014) MicroRNA-99a and 100 mediated upregulation of FOXA1 in bladder cancer.; Oncotarget, 5: 6375-86 |
|
GSE56037 |
| Dreser, Nadine et al. (2020) Development of a neural rosette formation assay (RoFA) to identify neurodevelopmental toxicants and to characterize their transcriptome disturbances.; Arch Toxicol, 94: 151-171 |
|
GSE141253 GSE71127 |
| Dressman, Holly K et al. (2006) Gene expression profiles of multiple breast cancer phenotypes and response to neoadjuvant chemotherapy.; Clin Cancer Res, 12: 819-26 |
|
GSE52322 |
| Drewniak, Agata et al. (2009) Changes in gene expression of granulocytes during in vivo granulocyte colony-stimulating factor/dexamethasone mobilization for transfusion purposes.; Blood, 113: 5979-98 |
|
GSE12841 |
| Drews, Katharina et al. (2012) The cytotoxic and immunogenic hurdles associated with non-viral mRNA-mediated reprogramming of human fibroblasts.; Biomaterials, 33: 4059-68 |
|
GSE34943 |
| Driessen, Terri M et al. [Unknown date]Molecular pathway analysis towards understanding tissue vulnerability in spinocerebellar ataxia type 1.; Elife, 7: [no pages] |
|
GSE122099 |
| Drägert, Katja et al. (2015) Deletion of Rictor in brain and fat alters peripheral clock gene expression and increases blood pressure.; Hypertension, 66: 332-9 |
|
GSE67077 |
| Dölken, Lars et al. (2010) Systematic analysis of viral and cellular microRNA targets in cells latently infected with human gamma-herpesviruses by RISC immunoprecipitation assay.; Cell Host Microbe, 7: 324-34 |
|
GSE18882 GSE17180 |
| Döring, Yvonne et al. (2012) Auto-antigenic protein-DNA complexes stimulate plasmacytoid dendritic cells to promote atherosclerosis.; Circulation, 125: 1673-83 |
|
GSE28829 |
| Dörr, Jan R et al. (2013) Synthetic lethal metabolic targeting of cellular senescence in cancer therapy.; Nature, 501: 421-5 |
|
GSE44355 |