List of all 16,776 published papers with data in Gemma:

To search for a paper or experiment and see more details, visit the annotated paper search page.

Driessen, Terri M et al. [Unknown date]Molecular pathway analysis towards understanding tissue vulnerability in spinocerebellar ataxia type 1.; Elife, 7: [no pages] PubMed link GSE122099  
Driessens, Natacha et al. (2009) Hydrogen peroxide induces DNA single- and double-strand breaks in thyroid cells and is therefore a potential mutagen for this organ.; Endocr Relat Cancer, 16: 845-56 PubMed link GSE39156  
Driscoll, James J et al. (2010) The sumoylation pathway is dysregulated in multiple myeloma and is associated with adverse patient outcome.; Blood, 115: 2827-34 PubMed link GSE5900  
Drissen, Roy et al. (2016) Distinct myeloid progenitor-differentiation pathways identified through single-cell RNA sequencing.; Nat Immunol, 17: 666-76 PubMed link GSE49241  
Drobysheva, Daria et al. (2015) Transformation of enriched mammary cell populations with polyomavirus middle T antigen influences tumor subtype and metastatic potential.; Breast Cancer Res, 17: 132 PubMed link GSE64453  
Dror, Erez et al. (2023) Epigenetic dosage identifies two major and functionally distinct β cell subtypes.; Cell Metab, 35: 821-836.e7 PubMed link GSE224059  
Drosatos, Konstantinos et al. (2007) A dominant negative form of the transcription factor c-Jun affects genes that have opposing effects on lipid homeostasis in mice.; J Biol Chem, [no vol.]: [no pages] PubMed link GSE6850  
Drouin-Ouellet, Janelle et al. (2022) Age-related pathological impairments in directly reprogrammed dopaminergic neurons derived from patients with idiopathic Parkinson's disease.; Stem Cell Reports, 17: 2203-2219 PubMed link GSE125239  
Drouin-Ouellet, Janelle et al. [Unknown date]REST suppression mediates neural conversion of adult human fibroblasts via microRNA-dependent and -independent pathways.; EMBO Mol Med, 9: 1117-1131 PubMed link GSE90068  
Drumm, Michael R et al. (2023) Postoperative risk of IDH-mutant glioma-associated seizures and their potential management with IDH-mutant inhibitors.; J Clin Invest, 133: [no pages] PubMed link GSE227995  
Du, Heng et al. (2022) Transcription factors Bcl11a and Bcl11b are required for the production and differentiation of cortical projection neurons.; Cereb Cortex, 32: 3611-3632 PubMed link GSE182990  
Du, Jiahui et al. (2023) BRD9-mediated chromatin remodeling suppresses osteoclastogenesis through negative feedback mechanism.; Nat Commun, 14: 1413 PubMed link GSE222239  
Du, Kunzhao et al. (2021) Distinct roles of Fto and Mettl3 in controlling development of the cerebral cortex through transcriptional and translational regulations.; Cell Death Dis, 12: 700 PubMed link GSE154992  
Du, Ngoc-Hien et al. (2014) MicroRNAs shape circadian hepatic gene expression on a transcriptome-wide scale.; Elife, 3: e02510 PubMed link GSE57313  
Du, Qiumei et al. (2019) MIR205HG Is a Long Noncoding RNA that Regulates Growth Hormone and Prolactin Production in the Anterior Pituitary.; Dev Cell, 49: 618-631.e5 PubMed link GSE126943  
Du, Shibin et al. (2022) A nerve injury-specific long noncoding RNA promotes neuropathic pain by increasing Ccl2 expression.; J Clin Invest, 132: [no pages] PubMed link GSE206043  
Du, Wei et al. (2016) Age-associated vascular inflammation promotes monocytosis during atherogenesis.; Aging Cell, 15: 766-77 PubMed link GSE69187  
Du, Wen et al. (2022) Pharmacological conversion of gut epithelial cells into insulin-producing cells lowers glycemia in diabetic animals.; J Clin Invest, 132: [no pages] PubMed link GSE201832   GSE213445  
Du, Xiangnan et al. (2012) FGFR3 stimulates stearoyl CoA desaturase 1 activity to promote bladder tumor growth.; Cancer Res, 72: 5843-55 PubMed link GSE41035  
Du, Xiaofei et al. [Unknown date]?1ACT Is Essential for Survival and Early Cerebellar Programming in a Critical Neonatal Window.; Neuron, 102: 770-785.e7 PubMed link GSE126089  
Du, Xinli et al. (2006) Genomic profiles for human peripheral blood T cells, B cells, natural killer cells, monocytes, and polymorphonuclear cells: comparisons to ischemic stroke, migraine, and Tourette syndrome.; Genomics, 87: 693-703 PubMed link GSE72642  
Du, Yingshi et al. (2023) NQO1 regulates expression and alternative splicing of apoptotic genes associated with Alzheimer's disease in PC12 cells.; Brain Behav, 13: e2917 PubMed link GSE185633  
Du, Zhanhui et al. (2020) Identification of Differentially Expressed Genes and Key Pathways in the Dorsal Root Ganglion After Chronic Compression.; Front Mol Neurosci, 13: 71 PubMed link GSE145222  
Duan, Chao et al. (2024) Stanniocalcin-1 promotes temozolomide resistance of glioblastoma through regulation of MGMT.; Sci Rep, 14: 20199 PubMed link GSE261684  
Duan, Chunwen et al. (2024) Retinal organoids with X-linked retinoschisis RS1 (E72K) mutation exhibit a photoreceptor developmental delay and are rescued by gene augmentation therapy.; Stem Cell Res Ther, 15: 152 PubMed link GSE267405  
Duan, Hongmei et al. (2015) Transcriptome analyses reveal molecular mechanisms underlying functional recovery after spinal cord injury.; Proc Natl Acad Sci U S A, 112: 13360-5 PubMed link GSE69334  
Duan, Jubao et al. (2013) Genome-wide survey of interindividual differences of RNA stability in human lymphoblastoid cell lines.; Sci Rep, 3: 1318 PubMed link GSE34204  
Duan, Qiming et al. (2017) BET bromodomain inhibition suppresses innate inflammatory and profibrotic transcriptional networks in heart failure.; Sci Transl Med, 9: [no pages] PubMed link GSE96561   GSE96560  
Duan, Shunlei et al. (2015) PTEN deficiency reprogrammes human neural stem cells towards a glioblastoma stem cell-like phenotype.; Nat Commun, 6: 10068 PubMed link GSE61794  
Duan, Wenzhe et al. (2023) Warburg effect enhanced by AKR1B10 promotes acquired resistance to pemetrexed in lung cancer-derived brain metastasis.; J Transl Med, 21: 547 PubMed link GSE211215  
Duarte, Rodrigo R R et al. (2019) The Psychiatric Risk Gene NT5C2 Regulates Adenosine Monophosphate-Activated Protein Kinase Signaling and Protein Translation in Human Neural Progenitor Cells.; Biol Psychiatry, 86: 120-130 PubMed link GSE109240  
Dubey, Richa et al. (2011) Small interfering RNA against transcription factor STAT6 leads to increased cholesterol synthesis in lung cancer cell lines.; PLoS One, 6: e28509 PubMed link GSE25942  
Dubois, M et al. (1974) Proceedings: Comparative study of recovery from short anaesthesia with thiopentone or althesin, apparatus used and results.; Br J Anaesth, 46: 320 PubMed link GSE56396  
Dubois, Patrick C A et al. (2010) Multiple common variants for celiac disease influencing immune gene expression.; Nat Genet, 42: 295-302 PubMed link GSE20332   GSE20142  
Dubois-Pot-Schneider, Hélène et al. (2014) Inflammatory cytokines promote the retrodifferentiation of tumor-derived hepatocyte-like cells to progenitor cells.; Hepatology, 60: 2077-90 PubMed link GSE52989  
Dubois-Pot-Schneider, Hélène et al. (2022) Transcriptional and Epigenetic Consequences of DMSO Treatment on HepaRG Cells.; Cells, 11: [no pages] PubMed link GSE112123  
Dubos, Aline et al. (2018) A new mouse model of ARX dup24 recapitulates the patients' behavioral and fine motor alterations.; Hum Mol Genet, 27: 2138-2153 PubMed link GSE90036  
Ducassou, Stéphane et al. (2017) MYB-GATA1 fusion promotes basophilic leukaemia: involvement of interleukin-33 and nerve growth factor receptors.; J Pathol, 242: 347-357 PubMed link GSE72913  
Ducheix, Simon et al. (2013) A systems biology approach to the hepatic role of the oxysterol receptor LXR in the regulation of lipogenesis highlights a cross-talk with PPAR?.; Biochimie, [no vol.]: [no pages] PubMed link GSE38083  
Duchnowska, Renata et al. (2015) Predicting early brain metastases based on clinicopathological factors and gene expression analysis in advanced HER2-positive breast cancer patients.; J Neurooncol, 122: 205-16 PubMed link GSE38057  
Duchnowska, Renata et al. (2017) Brain Metastasis Prediction by Transcriptomic Profiling in Triple-Negative Breast Cancer.; Clin Breast Cancer, 17: e65-e75 PubMed link GSE76714  
Duchon, Arnaud et al. (2021) Multi-influential genetic interactions alter behaviour and cognition through six main biological cascades in Down syndrome mouse models.; Hum Mol Genet, 30: 771-788 PubMed link GSE149459   GSE149465   GSE149464   GSE149463   GSE149462   GSE149461   GSE149460  
Duchon, Arnaud et al. (2022) Ts66Yah, a mouse model of Down syndrome with improved construct and face validity.; Dis Model Mech, 15: [no pages] PubMed link GSE213502   GSE213500  
Duclot, Florian et al. (2015) The estrous cycle surpasses sex differences in regulating the transcriptome in the rat medial prefrontal cortex and reveals an underlying role of early growth response 1.; Genome Biol, 16: 256 PubMed link GSE69765  
Ducreux, Julie et al. (2014) Global molecular effects of tocilizumab therapy in rheumatoid arthritis synovium.; Arthritis Rheumatol, 66: 15-23 PubMed link GSE45867  
Ducreux, Julie et al. (2016) Interferon α kinoid induces neutralizing anti-interferon α antibodies that decrease the expression of interferon-induced and B cell activation associated transcripts: analysis of extended follow-up data from the interferon α kinoid phase I/II study.; Rheumatology (Oxford), 55: 1901-5 PubMed link GSE72747  
Duda, Katarzyna J et al. (2021) m6A RNA methylation of major satellite repeat transcripts facilitates chromatin association and RNA:DNA hybrid formation in mouse heterochromatin.; Nucleic Acids Res, 49: 5568-5587 PubMed link GSE156481  
Dudley, Kevin J et al. (2008) Genome-wide analysis in a murine Dnmt1 knockdown model identifies epigenetically silenced genes in primary human pituitary tumors.; Mol Cancer Res, 6: 1567-74 PubMed link GSE10552  
Dudziak, Diana et al. (2007) Differential antigen processing by dendritic cell subsets in vivo.; Science, 315: 107-11 PubMed link GSE6259  
Duffy, Erin E et al. (2022) Developmental dynamics of RNA translation in the human brain.; Nat Neurosci, 25: 1353-1365 PubMed link GSE180240  
Dufour, Annika et al. (2010) Acute myeloid leukemia with biallelic CEBPA gene mutations and normal karyotype represents a distinct genetic entity associated with a favorable clinical outcome.; J Clin Oncol, 28: 570-7 PubMed link GSE15210  
Dufour, Damien et al. (2022) Loss of SUMO-specific protease 2 causes isolated glucocorticoid deficiency by blocking adrenal cortex zonal transdifferentiation in mice.; Nat Commun, 13: 7858 PubMed link GSE193480  
Dugaucquier, Lindsey et al. (2020) The role of endothelial autocrine NRG1/ERBB4 signaling in cardiac remodeling.; Am J Physiol Heart Circ Physiol, 319: H443-H455 PubMed link GSE150619  
Duggan, Jeffrey M et al. (2011) Synergistic interactions of TLR2/6 and TLR9 induce a high level of resistance to lung infection in mice.; J Immunol, 186: 5916-26 PubMed link GSE26864  
Duggan, Michael R et al. [Unknown date]Transcriptomic changes in the prefrontal cortex of rats as a function of age and cognitive engagement.; Neurobiol Learn Mem, 163: 107035 PubMed link GSE105453  
Duggan, Shane P et al. (2010) An integrative genomic approach in oesophageal cells identifies TRB3 as a bile acid responsive gene, downregulated in Barrett's oesophagus, which regulates NF-kappaB activation and cytokine levels.; Carcinogenesis, 31: 936-45 PubMed link GSE13400  
Duijkers, Floor A M et al. (2013) Epigenetic drug combination induces genome-wide demethylation and altered gene expression in neuro-ectodermal tumor-derived cell lines.; Cell Oncol (Dordr), 36: 351-62 PubMed link GSE35218  
Duivenvoorde, Loes P M et al. (2011) Dietary restriction of mice on a high-fat diet induces substrate efficiency and improves metabolic health.; J Mol Endocrinol, 47: 81-97 PubMed link GSE27213  
Duke, Corey G et al. (2017) Experience-dependent epigenomic reorganization in the hippocampus.; Learn Mem, 24: 278-288 PubMed link GSE95449  
Dulek, Daniel E et al. (2014) Allergic airway inflammation decreases lung bacterial burden following acute Klebsiella pneumoniae infection in a neutrophil- and CCL8-dependent manner.; Infect Immun, 82: 3723-39 PubMed link GSE57602  
Dulloo, Iqbal et al. (2024) Cleavage of the pseudoprotease iRhom2 by the signal peptidase complex reveals an ER-to-nucleus signaling pathway.; Mol Cell, 84: 277-292.e9 PubMed link GSE219008  
Dumas, Eric K et al. (2011) Anthrax lethal toxin-induced gene expression changes in mouse lung.; Toxins (Basel), 3: 1111-30 PubMed link GSE28554  
Dumeaux, Vanessa et al. (2006) Gene expression profiling of whole-blood samples from women exposed to hormone replacement therapy.; Mol Cancer Ther, 5: 868-76 PubMed link GSE3492  
Dumitriu, Alexandra et al. (2016) Integrative analyses of proteomics and RNA transcriptomics implicate mitochondrial processes, protein folding pathways and GWAS loci in Parkinson disease.; BMC Med Genomics, 9: 5 PubMed link GSE68719  
Dumur, Catherine I et al. (2010) Differential gene expression profiling of cultured neu-transformed versus spontaneously-transformed rat cholangiocytes and of corresponding cholangiocarcinomas.; Exp Mol Pathol, 89: 227-35 PubMed link GSE38834  
Duncan, Alexander et al. (2019) Habenular TCF7L2 links nicotine addiction to diabetes.; Nature, 574: 372-377 PubMed link GSE137118  
Duncan, F Jason et al. (2015) Broad functional correction of molecular impairments by systemic delivery of scAAVrh74-hSGSH gene delivery in MPS IIIA mice.; Mol Ther, 23: 638-47 PubMed link GSE97759  
Duncan, Francesca E et al. (2009) The effect of blastomere biopsy on preimplantation mouse embryo development and global gene expression.; Fertil Steril, 91: 1462-5 PubMed link GSE11206  
Duncan, Peter I et al. (2009) Sialic acid utilisation and synthesis in the neonatal rat revisited.; PLoS One, 4: e8241 PubMed link GSE18133  
Dunckley, Travis et al. (2006) Gene expression correlates of neurofibrillary tangles in Alzheimer's disease.; Neurobiol Aging, 27: 1359-71 PubMed link GSE4757  
Dunn, Amelia D et al. (2023) Molecular and long-term behavioral consequences of neonatal opioid exposure and withdrawal in mice.; Front Behav Neurosci, 17: 1202099 PubMed link GSE225468  
Dunn, Amy R et al. (2020) Identifying Mechanisms of Normal Cognitive Aging Using a Novel Mouse Genetic Reference Panel.; Front Cell Dev Biol, 8: 562662 PubMed link GSE119408  
Dunn, Carissa J et al. (2017) Histone Hypervariants H2A.Z.1 and H2A.Z.2 Play Independent and Context-Specific Roles in Neuronal Activity-Induced Transcription ofArc/Arg3.1and Other Immediate Early Genes.; eNeuro, 4: [no pages] PubMed link GSE96886  
Dunn, Emily N et al. (2018) Evaluating mice lacking serum carboxylesterase as a behavioral model for nerve agent intoxication.; Toxicol Mech Methods, 28: 563-572 PubMed link GSE114024  
Dunn, L L et al. (2006) The function of melanotransferrin: a role in melanoma cell proliferation and tumorigenesis.; Carcinogenesis, 27: 2157-69 PubMed link GSE4523  
Dunnick, June K et al. (2012) Characterization of polybrominated diphenyl ether toxicity in Wistar Han rats and use of liver microarray data for predicting disease susceptibilities.; Toxicol Pathol, 40: 93-106 PubMed link GSE32156  
Duns, Gerben et al. (2010) Histone methyltransferase gene SETD2 is a novel tumor suppressor gene in clear cell renal cell carcinoma.; Cancer Res, 70: 4287-91 PubMed link GSE20491  
Dunville, Keagan et al. (2022) Laminin 511 and WNT signalling sustain prolonged expansion of hiPSC-derived hippocampal progenitors.; Development, 149: [no pages] PubMed link GSE199355  
Duong, Austin T H et al. (2019) The Clock Mechanism Influences Neurobiology and Adaptations to Heart Failure in Clock?19/?19Mice With Implications for Circadian Medicine.; Sci Rep, 9: 4994 PubMed link GSE124670  
Duong, Phu et al. (2021) H3K27 demethylases are dispensable for activation of Polycomb-regulated injury response genes in peripheral nerve.; J Biol Chem, 297: 100852 PubMed link GSE178872.2   GSE178872.1  
Duplaquet, Leslie et al. (2024) Mammalian SWI/SNF complex activity regulates POU2F3 and constitutes a targetable dependency in small cell lung cancer.; Cancer Cell, 42: 1352-1369.e13 PubMed link GSE249258   GSE249362  
Dupré, Nicolas et al. (2024) Protein aggregates containing wild-type and mutant NOTCH3 are major drivers of arterial pathology in CADASIL.; J Clin Invest, 134: [no pages] PubMed link GSE242794  
Dupuy, Maryne et al. (2024) Transcriptional regulation of KCNA2 coding Kv1.2 by EWS::FLI1: involvement in controlling the YAP/Hippo signalling pathway and cell proliferation.; Cell Commun Signal, 22: 602 PubMed link GSE246854  
Duque-Afonso, Jesús et al. (2016) E2A-PBX1 Remodels Oncogenic Signaling Networks in B-cell Precursor Acute Lymphoid Leukemia.; Cancer Res, 76: 6937-6949 PubMed link GSE81010  
Durak, Omer et al. [Unknown date]Chd8 mediates cortical neurogenesis via transcriptional regulation of cell cycle and Wnt signaling.; Nat Neurosci, 19: 1477-1488 PubMed link GSE72442  
Duran, Raquel Cuevas-Diaz et al. (2017) The systematic analysis of coding and long non-coding RNAs in the sub-chronic and chronic stages of spinal cord injury.; Sci Rep, 7: 41008 PubMed link GSE93249  
Durbin, Adam D et al. (2018) Selective gene dependencies in MYCN-amplified neuroblastoma include the core transcriptional regulatory circuitry.; Nat Genet, 50: 1240-1246 PubMed link GSE108914  
Durán Alonso, María Beatriz et al. (2021) Meis2 Is Required for Inner Ear Formation and Proper Morphogenesis of the Cochlea.; Front Cell Dev Biol, 9: 679325 PubMed link GSE149916