List of all 16,789 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Duran, Raquel Cuevas-Diaz et al. (2017) The systematic analysis of coding and long non-coding RNAs in the sub-chronic and chronic stages of spinal cord injury.; Sci Rep, 7: 41008 |
|
GSE93249 |
| Durbin, Adam D et al. (2018) Selective gene dependencies in MYCN-amplified neuroblastoma include the core transcriptional regulatory circuitry.; Nat Genet, 50: 1240-1246 |
|
GSE108914 |
| Durgan, Joanne et al. (2015) SOS1 and Ras regulate epithelial tight junction formation in the human airway through EMP1.; EMBO Rep, 16: 87-96 |
|
GSE63229 |
| Durier, Séverine et al. (2003) Physiological genomics of human arteries: quantitative relationship between gene expression and arterial stiffness.; Circulation, 108: 1845-51 |
|
GSE420 |
| Durinck, K et al. (2015) Characterization of the genome-wide TLX1 binding profile in T-cell acute lymphoblastic leukemia.; Leukemia, 29: 2317-27 |
|
GSE62140 GSE62135 GSE62143 GSE62141 |
| Duroux-Richard, Isabelle et al. (2022) miRNA profile at diagnosis predicts treatment outcome in patients with B-chronic lymphocytic leukemia: A FILO study.; Front Immunol, 13: 983771 |
|
GSE214763 |
| Durrenberger, Pascal F et al. (2012) Selection of novel reference genes for use in the human central nervous system: a BrainNet Europe Study.; Acta Neuropathol, 124: 893-903 |
|
GSE26927 |
| Durán Alonso, María Beatriz et al. (2021) Meis2 Is Required for Inner Ear Formation and Proper Morphogenesis of the Cochlea.; Front Cell Dev Biol, 9: 679325 |
|
GSE149916 |
| Duréndez-Sáez, Elena et al. (2022) Analysis of Exosomal Cargo Provides Accurate Clinical, Histologic and Mutational Information in Non-Small Cell Lung Cancer.; Cancers (Basel), 14: [no pages] |
|
GSE198238 |
| Dusan, Matusica et al. (2020) Differentiation of the 50B11 dorsal ganglion cells into NGF and GDNF responsive nociceptor subtypes.; Mol Pain, 16: 1744806920970368 |
|
GSE147186 |
| Dusek, Jeffery A et al. (2008) Genomic counter-stress changes induced by the relaxation response.; PLoS One, 3: e2576 |
|
GSE10041 |
| Dutra, Sabrina G V et al. (2021) Physiological and Transcriptomic Changes in the Hypothalamic-Neurohypophysial System after 24 h of Furosemide-Induced Sodium Depletion.; Neuroendocrinology, 111: 70-86 |
|
GSE145431 |
| Dutta Banik, Debarghya et al. (2023) EGR4 is critical for cell-fate determination and phenotypic maintenance of geniculate ganglion neurons underlying sweet and umami taste.; Proc Natl Acad Sci U S A, 120: e2217595120 |
|
GSE223724 |
| Dutta, Arun B et al. (2023) Kinetic networks identify TWIST2 as a key regulatory node in adipogenesis.; Genome Res, 33: 314-331 |
|
GSE219051 |
| Dutta, S et al. [Unknown date]The target cell of transformation is distinct from the leukemia stem cell in murine CALM/AF10 leukemia models.; Leukemia, 30: 1166-76 |
|
GSE58853 |
| Dutta-Simmons, Jui et al. (2009) Aurora kinase A is a target of Wnt/beta-catenin involved in multiple myeloma disease progression.; Blood, 114: 2699-708 |
|
GSE17385 |
| Dutzmann, Jochen et al. (2021) BET bromodomain-containing epigenetic reader proteins regulate vascular smooth muscle cell proliferation and neointima formation.; Cardiovasc Res, 117: 850-862 |
|
GSE138323 |
| Duy, Phan Q et al. (2022) Impaired neurogenesis alters brain biomechanics in a neuroprogenitor-based genetic subtype of congenital hydrocephalus.; Nat Neurosci, 25: 458-473 |
|
GSE189420 |
| Dvinge, Heidi et al. (2014) Sample processing obscures cancer-specific alterations in leukemic transcriptomes.; Proc Natl Acad Sci U S A, 111: 16802-7 |
|
GSE58335 |
| Dvoriantchikova, Galina et al. (2015) Molecular Characterization of Notch1 Positive Progenitor Cells in the Developing Retina.; PLoS One, 10: e0131054 |
|
GSE65977 |
| Dwarkasing, J T et al. (2016) Increased hypothalamic serotonin turnover in inflammation-induced anorexia.; BMC Neurosci, 17: 26 |
|
GSE69151 |
| Dwarkasing, Jvalini T et al. (2014) Hypothalamic food intake regulation in a cancer-cachectic mouse model.; J Cachexia Sarcopenia Muscle, 5: 159-69 |
|
GSE44081 GSE44082 |
| Dwivedi, Anuj Kumar et al. (2025) High-resolution multimodal profiling of human epileptic brain activity via explanted depth electrodes.; JCI Insight, 10: [no pages] |
|
GSE268714 |
| Dwivedi, Ila et al. (2023) Methadone alters transcriptional programs associated with synapse formation in human cortical organoids.; Transl Psychiatry, 13: 151 |
|
GSE210682 |
| Dwomoh, Louis et al. (2022) M1muscarinic receptor activation reduces the molecular pathology and slows the progression of prion-mediated neurodegenerative disease.; Sci Signal, 15: eabm3720 |
|
GSE202275 |
| Dwyer, Amy R et al. (2023) Glucocorticoid Receptors Drive Breast Cancer Cell Migration and Metabolic Reprogramming via PDK4.; Endocrinology, 164: [no pages] |
|
GSE221355 |
| Dykes, Iain M et al. (2018) HIC2 regulates isoform switching during maturation of the cardiovascular system.; J Mol Cell Cardiol, 114: 29-37 |
|
GSE56430 |
| Dyrskjøt, Lars et al. (2003) Identifying distinct classes of bladder carcinoma using microarrays.; Nat Genet, 33: 90-6 |
|
GSE89 GSE88 |
| Dyrskjøt, Lars et al. (2004) Gene expression in the urinary bladder: a common carcinoma in situ gene expression signature exists disregarding histopathological classification.; Cancer Res, 64: 4040-8 |
|
GSE3167 |
| Dürig, J et al. (2007) Combined single nucleotide polymorphism-based genomic mapping and global gene expression profiling identifies novel chromosomal imbalances, mechanisms and candidate genes important in the pathogenesis of T-cell prolymphocytic leukemia with inv(14)(q11q32).; Leukemia, 21: 2153-63 |
|
GSE5788 |
| Dürig, J et al. (2011) The novel antisense Bcl-2 inhibitor SPC2996 causes rapid leukemic cell clearance and immune activation in chronic lymphocytic leukemia.; Leukemia, 25: 638-47 |
|
GSE27858 |
| Düvel, Katrin et al. (2010) Activation of a metabolic gene regulatory network downstream of mTOR complex 1.; Mol Cell, 39: 171-83 |
|
GSE21755 |
| Eagle, Andrew L et al. (2020) Circuit-specific hippocampal ?FosB underlies resilience to stress-induced social avoidance.; Nat Commun, 11: 4484 |
|
GSE137283 |
| Easton, Amy et al. (2022) Identification and characterization of a MAPT-targeting locked nucleic acid antisense oligonucleotide therapeutic for tauopathies.; Mol Ther Nucleic Acids, 29: 625-642 |
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GSE204931 GSE204930 |
| Easton, Zachary J W et al. (2023) An Integrated Multi-OMICS Approach Highlights Elevated Non-Esterified Fatty Acids Impact BeWo Trophoblast Metabolism and Lipid Processing.; Metabolites, 13: [no pages] |
|
GSE197385 |
| Ebeid, Michael et al. (2022) PRDM16 expression and function in mammalian cochlear development.; Dev Dyn, 251: 1666-1683 |
|
GSE193046 |
| Eberle, Dominic et al. (2011) Increased integration of transplanted CD73-positive photoreceptor precursors into adult mouse retina.; Invest Ophthalmol Vis Sci, 52: 6462-71 |
|
GSE29318 |
| Ebert, Allison D et al. (2009) Induced pluripotent stem cells from a spinal muscular atrophy patient.; Nature, 457: 277-80 |
|
GSE13828 |
| Ebert, Antje D et al. (2014) Characterization of the molecular mechanisms underlying increased ischemic damage in the aldehyde dehydrogenase 2 genetic polymorphism using a human induced pluripotent stem cell model system.; Sci Transl Med, 6: 255ra130 |
|
GSE59100 |
| Ebert, Benjamin L et al. (2008) Identification of RPS14 as a 5q- syndrome gene by RNA interference screen.; Nature, 451: 335-9 |
|
GSE9487 |
| Ebert, Scott M et al. (2010) The transcription factor ATF4 promotes skeletal myofiber atrophy during fasting.; Mol Endocrinol, 24: 790-9 |
|
GSE20103 GSE20101 |
| Ebert, Scott M et al. (2015) Identification and Small Molecule Inhibition of an Activating Transcription Factor 4 (ATF4)-dependent Pathway to Age-related Skeletal Muscle Weakness and Atrophy.; J Biol Chem, 290: 25497-511 |
|
GSE72658 |
| Ebert, Scott M et al. (2020) Activating transcription factor 4 (ATF4) promotes skeletal muscle atrophy by forming a heterodimer with the transcriptional regulator C/EBPβ.; J Biol Chem, 295: 2787-2803 |
|
GSE39193 GSE39194 |
| Ebina-Shibuya, Risa et al. (2016) The double knockout of Bach1 and Bach2 in mice reveals shared compensatory mechanisms in regulating alveolar macrophage function and lung surfactant homeostasis.; J Biochem, 160: 333-344 |
|
GSE79023 |
| Ebner, L J A et al. (2021) Transcriptomic analysis of the mouse retina after acute and chronic normobaric and hypobaric hypoxia.; Sci Rep, 11: 16666 |
|
GSE173233.1 |
| Ebrahimi, Aref et al. [Unknown date]Evidence of stress in ? cells obtained with laser capture microdissection from pancreases of brain dead donors.; Islets, 9: 19-29 |
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GSE89120 |
| Echave, Pedro et al. (2009) Extracellular growth factors and mitogens cooperate to drive mitochondrial biogenesis.; J Cell Sci, 122: 4516-25 |
|
GSE10775 |
| Echevarría-Vargas, Ileabett M et al. (2018) Co-targeting BET and MEK as salvage therapy for MAPK and checkpoint inhibitor-resistant melanoma.; EMBO Mol Med, 10: [no pages] |
|
GSE95153 |
| Echeverria, Gloria V et al. (2023) Predictors of success in establishing orthotopic patient-derived xenograft models of triple negative breast cancer.; NPJ Breast Cancer, 9: 2 |
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GSE216333 |
| Eck, Samantha R et al. (2020) Stress Regulation of Sustained Attention and the Cholinergic Attention System.; Biol Psychiatry, 88: 566-575 |
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GSE147806 |
| Eck, Samantha R et al. (2022) Effects of early life adversity on male reproductive behavior and the medial preoptic area transcriptome.; Neuropsychopharmacology, 47: 1231-1239 |
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GSE174753 |
| Eckel-Mahan, Kristin L et al. (2013) Reprogramming of the circadian clock by nutritional challenge.; Cell, 155: 1464-78 |
|
GSE52333 |
| Eckel-Passow, Jeanette E et al. (2014) ANKS1B is a smoking-related molecular alteration in clear cell renal cell carcinoma.; BMC Urol, 14: 14 |
|
GSE46699 |
| Eckerle, S et al. (2009) Gene expression profiling of isolated tumour cells from anaplastic large cell lymphomas: insights into its cellular origin, pathogenesis and relation to Hodgkin lymphoma.; Leukemia, 23: 2129-38 |
|
GSE14879 |
| Eckler, Matthew J et al. (2011) Fezf1 and Fezf2 are required for olfactory development and sensory neuron identity.; J Comp Neurol, 519: 1829-46 |
|
GSE26064 |
| Economo, Michael N et al. [Unknown date]Distinct descending motor cortex pathways and their roles in movement.; Nature, 563: 79-84 |
|
GSE119182 |
| Edara, Venkata Viswanadh et al. (2020) Insights into the Gene Expression Profiles of Active and Restricted Red/Green-HIV+Human Astrocytes: Implications for Shock or Lock Therapies in the Brain.; J Virol, 94: [no pages] |
|
GSE141756 |
| Edeline, Julien et al. (2012) Description of 2 angiogenic phenotypes in clear cell renal cell carcinoma.; Hum Pathol, 43: 1982-90 |
|
GSE29609 |
| Edelstein, Leonard C et al. (2013) Racial differences in human platelet PAR4 reactivity reflect expression of PCTP and miR-376c.; Nat Med, 19: 1609-16 |
|
GSE49921 |
| Edgar, Contessa E et al. (2015) Ribosomal and immune transcripts associate with relapse in acquired ADAMTS13-deficient thrombotic thrombocytopenic purpura.; PLoS One, 10: e0117614 |
|
GSE36418 |
| Edlow, Andrea G et al. (2014) Maternal obesity affects fetal neurodevelopmental and metabolic gene expression: a pilot study.; PLoS One, 9: e88661 |
|
GSE48521 |
| Edlow, Andrea G et al. (2019) Significant Effects of Maternal Diet During Pregnancy on the Murine Fetal Brain Transcriptome and Offspring Behavior.; Front Neurosci, 13: 1335 |
|
GSE133525 |
| Edlund, Karolina et al. (2021) Gene Expression-Based Prediction of Neoadjuvant Chemotherapy Response in Early Breast Cancer: Results of the Prospective Multicenter EXPRESSION Trial.; Clin Cancer Res, 27: 2148-2158 |
|
GSE140494 |
| Edmonds, Rebecca D et al. (2011) Transcriptomic response of murine liver to severe injury and hemorrhagic shock: a dual-platform microarray analysis.; Physiol Genomics, 43: 1170-83 |
|
GSE26695 |
| Edmunds, Shelley J et al. (2012) Effects of kiwifruit extracts on colonic gene and protein expression levels in IL-10 gene-deficient mice.; Br J Nutr, 108: 113-29 |
|
GSE27684 |
| Edri, Reuven et al. (2015) Analysing human neural stem cell ontogeny by consecutive isolation of Notch active neural progenitors.; Nat Commun, 6: 6500 |
|
GSE65369 |
| Edwards, Alexander D et al. (2003) Relationships among murine CD11c(high) dendritic cell subsets as revealed by baseline gene expression patterns.; J Immunol, 171: 47-60 |
|
GSE339 |
| Efthymiou, Anastasia G et al. (2015) Rescue of an in vitro neuron phenotype identified in Niemann-Pick disease, type C1 induced pluripotent stem cell-derived neurons by modulating the WNT pathway and calcium signaling.; Stem Cells Transl Med, 4: 230-8 |
|
GSE55379 |
| Egervari, Gabor et al. (2025) Decreased voluntary alcohol intake and ventral striatal epigenetic and transcriptional remodeling in male Acss2 KO mice.; Neuropharmacology, 265: 110258 |
|
GSE249119 |
| Egger, Anna et al. (2012) PGC-1? determines light damage susceptibility of the murine retina.; PLoS One, 7: e31272 |
|
GSE80265 |
| Egiazarian, Milena A et al. (2022) Age- and sex-dependent effects of DNA glycosylase Neil3 on amyloid pathology, adult neurogenesis, and memory in a mouse model of Alzheimer's disease.; Free Radic Biol Med, 193: 685-693 |
|
GSE197199 |
| Egilmezer, Ece et al. (2024) Human cytomegalovirus (CMV) dysregulates neurodevelopmental pathways in cerebral organoids.; Commun Biol, 7: 340 |
|
GSE217832 |
| Egli, Dieter et al. (2010) Recipient cell nuclear factors are required for reprogramming by nuclear transfer.; Development, 137: 1953-63 |
|
GSE21609 |
| Egli, Dieter et al. (2011) Reprogramming within hours following nuclear transfer into mouse but not human zygotes.; Nat Commun, 2: 488 |
|
GSE24631 |
| Egolf, Shaun et al. [Unknown date]LSD1 Inhibition Promotes Epithelial Differentiation through Derepression of Fate-Determining Transcription Factors.; Cell Rep, 28: 1981-1992.e7 |
|
GSE133766 |
| Eguchi, Akiko et al. (2009) Efficient siRNA delivery into primary cells by a peptide transduction domain-dsRNA binding domain fusion protein.; Nat Biotechnol, 27: 567-71 |
|
GSE15723 |
| Ehlers, A et al. (2008) Histone acetylation and DNA demethylation of B cells result in a Hodgkin-like phenotype.; Leukemia, 22: 835-41 |
|
GSE8388 |
| Ehlers, Anke et al. (2015) The glucosinolate metabolite 1-methoxy-3-indolylmethyl alcohol induces a gene expression profile in mouse liver similar to the expression signature caused by known genotoxic hepatocarcinogens.; Mol Nutr Food Res, 59: 685-97 |
|
GSE61494 |
| Ehling, Manuel et al. (2020) B55α/PP2A Limits Endothelial Cell Apoptosis During Vascular Remodeling: A Complementary Approach To Disrupt Pathological Vessels?; Circ Res, 127: 707-723 |
|
GSE202220 |
| Ehlken, Christoph et al. (2019) Expression of Angiogenic and Inflammatory Factors in Choroidal Neovascularisation-Derived Retinal Pigment Epithelium.; Ophthalmic Res, 61: 174-182 |
|
GSE103060 |
| Ehmer, Ursula et al. (2014) Organ size control is dominant over Rb family inactivation to restrict proliferation in vivo.; Cell Rep, 8: 371-81 |
|
GSE43631 |
| Ehrlich, Marc et al. (2015) Distinct Neurodegenerative Changes in an Induced Pluripotent Stem Cell Model of Frontotemporal Dementia Linked to Mutant TAU Protein.; Stem Cell Reports, 5: 83-96 |
|
GSE62935 |
| Ehrlich, Marc et al. [Unknown date]Rapid and efficient generation of oligodendrocytes from human induced pluripotent stem cells using transcription factors.; Proc Natl Acad Sci U S A, 114: E2243-E2252 |
|
GSE79912 |
| Ehrman, Jacqueline M et al. (2022) Formation of the Mouse Internal Capsule and Cerebral Peduncle: A Pioneering Role for Striatonigral Axons as Revealed inIsl1Conditional Mutants.; J Neurosci, 42: 3344-3364 |
|
GSE198385 |
| Eichelberger, Eric J et al. (2021) Increased systemic HSP70B levels in spinal muscular atrophy infants.; Ann Clin Transl Neurol, 8: 1495-1501 |
|
GSE174056 |
| Eichner, Johannes et al. (2013) A toxicogenomic approach for the prediction of murine hepatocarcinogenesis using ensemble feature selection.; PLoS One, 8: e73938 |
|
GSE44783 |
| Eichner, Lillian J et al. (2023) HDAC3 is critical in tumor development and therapeutic resistance inKras-mutant non-small cell lung cancer.; Sci Adv, 9: eadd3243 |
|
GSE164756 GSE164755 GSE164758 GSE164757 |
| Eid, Stéphanie A et al. (2024) Transcriptomic profiling of sciatic nerves and dorsal root ganglia reveals site-specific effects of prediabetic neuropathy.; Transl Res, 270: 24-41 |
|
GSE225224 |
| Eikmans, Michael et al. (2012) The functional polymorphism Ala258Ser in the innate receptor gene ficolin-2 in the donor predicts improved renal transplant outcome.; Transplantation, 94: 478-85 |
|
GSE47097 |