List of all 22,542 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| DeAngelo, Joseph D et al. (2024) Productive mRNA Chromatin Escape is Promoted by PRMT5 Methylation of SNRPB.; bioRxiv, [no vol.]: [no pages] |
|
GSE275220 |
| DeAngelo, Joseph D et al. (2025) Productive mRNA chromatin escape is promoted by PRMT5 activity.; Mol Cell, 85: 4016-4031.e9 |
|
GSE275215 GSE275214 |
| Deaton, Aimée M et al. (2011) Cell type-specific DNA methylation at intragenic CpG islands in the immune system.; Genome Res, 21: 1074-86 |
|
GSE25578 |
| Debey-Pascher, Svenja et al. (2011) RNA-stabilized whole blood samples but not peripheral blood mononuclear cells can be stored for prolonged time periods prior to transcriptome analysis.; J Mol Diagn, 13: 452-60 |
|
GSE24757 GSE24753 GSE24755 |
| Deblois, Geneviève et al. (2016) ERR? mediates metabolic adaptations driving lapatinib resistance in breast cancer.; Nat Commun, 7: 12156 |
|
GSE81546 |
| Debnath, Irina et al. (2013) Bone marrow-induced Mef2c deficiency delays B-cell development and alters the expression of key B-cell regulatory proteins.; Int Immunol, 25: 99-115 |
|
GSE34210 |
| DeBoer, E M et al. (2013) Post-transcriptional regulatory elements and spatiotemporal specification of neocortical stem cells and projection neurons.; Neuroscience, 248: 499-528 |
|
GSE61751 |
| Dec, Karolina et al. (2023) A high ratio of linoleic acid (n-6 PUFA) to alpha-linolenic acid (n-3 PUFA) adversely affects early stage of human neuronal differentiation and electrophysiological activity of glutamatergic neuronsin vitro.; Front Cell Dev Biol, 11: 1166808 |
|
GSE228997 |
| Decker, Keith F et al. (2012) Persistent androgen receptor-mediated transcription in castration-resistant prostate cancer under androgen-deprived conditions.; Nucleic Acids Res, 40: 10765-79 |
|
GSE40050 |
| Decker, Tim-Michael et al. (2017) Transcriptome analysis of dominant-negative Brd4 mutants identifies Brd4-specific target genes of small molecule inhibitor JQ1.; Sci Rep, 7: 1684 |
|
GSE92456 |
| Deckers, Claire et al. (2024) Early resource scarcity causes cortical astrocyte enlargement and sex-specific changes in the orbitofrontal cortex transcriptome in adult rats.; Neurobiol Stress, 29: 100607 |
|
GSE176488 |
| Decock, Anneleen et al. (2012) Genome-wide promoter methylation analysis in neuroblastoma identifies prognostic methylation biomarkers.; Genome Biol, 13: R95 |
|
GSE31229 |
| Decombis, Salomé et al. (2022) The IL32/BAFF axis supports prosurvival dialogs in the lymphoma ecosystem and is disrupted by NIK inhibition.; Haematologica, 107: 2905-2917 |
|
GSE179636 GSE179766 |
| Deczkowska, Aleksandra et al. (2017) Mef2C restrains microglial inflammatory response and is lost in brain ageing in an IFN-I-dependent manner.; Nat Commun, 8: 717 |
|
GSE98401 |
| Deehan, Renée et al. (2012) Comparative transcriptional network modeling of three PPAR-?/? co-agonists reveals distinct metabolic gene signatures in primary human hepatocytes.; PLoS One, 7: e35012 |
|
GSE33152 |
| Deelen, Laura et al. (2025) Hominoid-specific transposable elements reshaped neural crest migration in craniofacial development.; Mol Syst Biol, 21: 1731-1747 |
|
GSE292478 |
| Deepa, Sathyaseelan S et al. (2018) Lifelong reduction in complex IV induces tissue-specific metabolic effects but does not reduce lifespan or healthspan in mice.; Aging Cell, 17: e12769 |
|
GSE107191 |
| DeFalco, Tony et al. (2011) Two distinct origins for Leydig cell progenitors in the fetal testis.; Dev Biol, 352: 14-26 |
|
GSE41715 |
| Defaye, Manon et al. (2022) The neuronal tyrosine kinase receptor ligand ALKAL2 mediates persistent pain.; J Clin Invest, 132: [no pages] |
|
GSE201227 |
| Defaye, Manon et al. (2024) Induction of antiviral interferon-stimulated genes by neuronal STING promotes the resolution of pain in mice.; J Clin Invest, 134: [no pages] |
|
GSE221834 GSE236865 |
| Deferme, L et al. (2013) Time series analysis of oxidative stress response patterns in HepG2: a toxicogenomics approach.; Toxicology, 306: 24-34 |
|
GSE39291 |
| Deffenbacher, Karen E et al. (2010) Recurrent chromosomal alterations in molecularly classified AIDS-related lymphomas: an integrated analysis of DNA copy number and gene expression.; J Acquir Immune Defic Syndr, 54: 18-26 |
|
GSE17372 |
| Deforzh, Evgeny et al. (2023) HOXDeRNA activates a cancerous transcription program and super-enhancers genome-wide.; bioRxiv, [no vol.]: [no pages] |
|
GSE227802 |
| DeGeer, Jonathan et al. (2022) Ral GTPases are critical regulators of spinal cord myelination and homeostasis.; Cell Rep, 40: 111413 |
|
GSE180725 |
| Degorre, Charlotte et al. (2022) Glioblastoma cells have increased capacity to repair radiation-induced DNA damage after migration to the olfactory bulb.; Cancer Cell Int, 22: 389 |
|
GSE212161 |
| Degorre, Charlotte et al. (2024) Targeting PRMT5 enhances the radiosensitivity of tumor cells grown in vitro and in vivo.; Sci Rep, 14: 17316 |
|
GSE264609 |
| Degroat, Thomas J et al. (2024) Chronic stress and its effects on behavior, RNA expression of the bed nucleus of the stria terminalis, and the M-current of NPY neurons.; Psychoneuroendocrinology, 161: 106920 |
|
GSE235108 |
| Dehan, E et al. (2007) Chromosomal aberrations and gene expression profiles in non-small cell lung cancer.; Lung Cancer, 56: 175-84 |
|
GSE1987 |
| Dehestani, Mohammad et al. (2024) Transcriptomic changes in oligodendrocytes and precursor cells associate with clinical outcomes of Parkinson's disease.; Mol Brain, 17: 56 |
|
GSE272760.1 GSE272760.2 |
| Dehm, Verena et al. (2024) Molecular Analysis of the Differential Activity of Sox8 and Sox10 in Oligodendroglial Cells.; Int J Mol Sci, 25: [no pages] |
|
GSE280389 |
| Deisenroth, Chad et al. (2014) MYC is an early response regulator of human adipogenesis in adipose stem cells.; PLoS One, 9: e114133 |
|
GSE57538 |
| Dejanovic, Borislav et al. (2022) Complement C1q-dependent excitatory and inhibitory synapse elimination by astrocytes and microglia in Alzheimer's disease mouse models.; Nat Aging, 2: 837-850 |
|
GSE186414 |
| Dekervel, Jeroen et al. (2017) Acriflavine Inhibits Acquired Drug Resistance by Blocking the Epithelial-to-Mesenchymal Transition and the Unfolded Protein Response.; Transl Oncol, 10: 59-69 |
|
GSE82110 GSE82293 |
| Dekker, Pim et al. (2012) Microarray-based identification of age-dependent differences in gene expression of human dermal fibroblasts.; Mech Ageing Dev, 133: 498-507 |
|
GSE28300 |
| Del Blanco, Beatriz et al. (2019) CBP and SRF co-regulate dendritic growth and synaptic maturation.; Cell Death Differ, [no vol.]: [no pages] |
|
GSE118248 |
| Del Blanco, Beatriz et al. (2024) Kdm1a safeguards the topological boundaries of PRC2-repressed genes and prevents aging-related euchromatinization in neurons.; Nat Commun, 15: 1781 |
|
GSE236182 |
| Del Bondio, Andrea et al. (2023) Restoring calcium homeostasis in Purkinje cells arrests neurodegeneration and neuroinflammation in the ARSACS mouse model.; JCI Insight, 8: [no pages] |
|
GSE200876 |
| del Fresno, Carlos et al. (2009) Potent phagocytic activity with impaired antigen presentation identifying lipopolysaccharide-tolerant human monocytes: demonstration in isolated monocytes from cystic fibrosis patients.; J Immunol, 182: 6494-507 |
|
GSE15219 |
| Del Giudice, Ilaria et al. (2009) Spontaneous regression of chronic lymphocytic leukemia: clinical and biologic features of 9 cases.; Blood, 114: 638-46 |
|
GSE15777 |
| Del Mármol, Josefina Inés et al. (2018) Piezo1 forms a slowly-inactivating mechanosensory channel in mouse embryonic stem cells.; Elife, 7: [no pages] |
|
GSE106526 |
| Del Olmo, Marta et al. (2022) Inter-layer and inter-subject variability of diurnal gene expression in human skin.; NAR Genom Bioinform, 4: lqac097 |
|
GSE205155 |
| Del Rey, Manuel J et al. (2010) The transcriptional response of normal and rheumatoid arthritis synovial fibroblasts to hypoxia.; Arthritis Rheum, 62: 3584-94 |
|
GSE21959 |
| Del Rey, Manuel J et al. (2012) Transcriptome analysis reveals specific changes in osteoarthritis synovial fibroblasts.; Ann Rheum Dis, 71: 275-80 |
|
GSE29746 |
| Del Rio, Maguy et al. (2013) Specific extracellular matrix remodeling signature of colon hepatic metastases.; PLoS One, 8: e74599 |
|
GSE49355 |
| Del Rosario, Brian C et al. (2019) Exploration of CTCF post-translation modifications uncovers Serine-224 phosphorylation by PLK1 at pericentric regions during the G2/M transition.; Elife, 8: [no pages] |
|
GSE119697 |
| Dela Peña, Ike et al. (2013) Neuronal development genes are key elements mediating the reinforcing effects of methamphetamine, amphetamine, and methylphenidate.; Psychopharmacology (Berl), 230: 399-413 |
|
GSE43748 |
| Delaleu, Nicolas et al. (2013) Transcriptional landscapes of emerging autoimmunity: transient aberrations in the targeted tissue's extracellular milieu precede immune responses in Sjögren's syndrome.; Arthritis Res Ther, 15: R174 |
|
GSE36378 |
| Delaney, Sean P. et al. (2019) Human pluripotent stem cell modeling of tuberous sclerosis complex reveals lineage-specific therapeutic vulnerabilities; bioRxiv, [no vol.]: [no pages] |
|
GSE137614 |
| Delaney, Tracy A et al. (2016) Type I IFNs Regulate Inflammation, Vasculopathy, and Fibrosis in Chronic Cutaneous Graft-versus-Host Disease.; J Immunol, 197: 42-50 |
|
GSE79194 |
| Delaunay-Piednoir, Barbara et al. (2025) Tissue-type plasminogen activator expression by endothelial cells and oligodendrocytes is required for proper CNS myelination.; Acta Neuropathol Commun, 13: 192 |
|
GSE305259.1 GSE305259.2 |
| Delbridge, Alex R D et al. (2019) Loss of p53 Causes Stochastic Aberrant X-Chromosome Inactivation and Female-Specific Neural Tube Defects.; Cell Rep, 27: 442-454.e5 |
|
GSE127446 |
| Delbridge, Alex R D et al. (2020) Organotypic Brain Slice Culture Microglia Exhibit Molecular Similarity to Acutely-Isolated Adult Microglia and Provide a Platform to Study Neuroinflammation.; Front Cell Neurosci, 14: 592005 |
|
GSE154853 |
| Delbès, Anne-Sophie et al. (2023) Mice with humanized livers reveal the role of hepatocyte clocks in rhythmic behavior.; Sci Adv, 9: eadf2982 |
|
GSE212079 |
| Delconte, Rebecca B et al. (2016) The Helix-Loop-Helix Protein ID2 Governs NK Cell Fate by Tuning Their Sensitivity to Interleukin-15.; Immunity, 44: 103-115 |
|
GSE76466 |
| Delday, Margaret et al. (2019) Bacteroides thetaiotaomicron Ameliorates Colon Inflammation in Preclinical Models of Crohn's Disease.; Inflamm Bowel Dis, 25: 85-96 |
|
GSE118524 |
| Delekta, Phillip C et al. (2014) Novel indole-2-carboxamide compounds are potent broad-spectrum antivirals active against western equine encephalitis virus in vivo.; J Virol, 88: 11199-214 |
|
GSE51909 |
| Delepine, Chloe et al. (2023) Differential Effects of Astrocyte Manipulations on Learned Motor Behavior and Neuronal Ensembles in the Motor Cortex.; J Neurosci, 43: 2696-2713 |
|
GSE156661 |
| Delgado, Camila et al. (2021) Neural cell adhesion molecule is required for ventricular conduction system development.; Development, 148: [no pages] |
|
GSE172267 |
| Delgado, Oliver et al. (2014) Radiation-enhanced lung cancer progression in a transgenic mouse model of lung cancer is predictive of outcomes in human lung and breast cancer.; Clin Cancer Res, 20: 1610-22 |
|
GSE42233 |
| Delgado-Olguín, Paul et al. (2012) Epigenetic repression of cardiac progenitor gene expression by Ezh2 is required for postnatal cardiac homeostasis.; Nat Genet, 44: 343-7 |
|
GSE30076 |
| Deliu, Elena et al. (2018) Haploinsufficiency of the intellectual disability gene SETD5 disturbs developmental gene expression and cognition.; Nat Neurosci, 21: 1717-1727 |
|
GSE119498 |
| Delker, Don A et al. (2014) RNA sequencing of sessile serrated colon polyps identifies differentially expressed genes and immunohistochemical markers.; PLoS One, 9: e88367 |
|
GSE46513 |
| Dell'Anno, Maria Teresa et al. (2018) Human neuroepithelial stem cell regional specificity enables spinal cord repair through a relay circuit.; Nat Commun, 9: 3419 |
|
GSE107514 |
| Dell'Orco, Michela et al. (2023) Repetitive Spreading Depolarization induces gene expression changes related to synaptic plasticity and neuroprotective pathways.; bioRxiv, [no vol.]: [no pages] |
|
GSE214623 |
| Della Valle, Ilaria et al. (2024) Loss of homeostatic functions in microglia from a murine model of Friedreich's ataxia.; Genes Dis, 11: 101178 |
|
GSE232826 |
| Delmore, Jake E et al. (2011) BET bromodomain inhibition as a therapeutic strategy to target c-Myc.; Cell, 146: 904-17 |
|
GSE31365 |
| Delobel, Valentin et al. (2026) Endothelial TRIM47 regulates blood-brain barrier integrity and cognition via the KEAP1/NRF2 signalling pathway in mice.; Commun Biol, 9: [no pages] |
|
GSE279052 |
| Delorme, Bruno et al. (2010) The human nose harbors a niche of olfactory ectomesenchymal stem cells displaying neurogenic and osteogenic properties.; Stem Cells Dev, 19: 853-66 |
|
GSE24598 |
| Delorme, Tara C et al. (2025) Large-scale effects of prenatal inflammation and early life circadian disruption in mice: Implications for neurodevelopmental disorders.; Brain Behav Immun, 127: 409-422 |
|
GSE255938 |
| Delp, Johannes et al. (2017) Stage-specific metabolic features of differentiating neurons: Implications for toxicant sensitivity.; Toxicol Appl Pharmacol, [no vol.]: [no pages] |
|
GSE107999 |
| Delvalle, Ninotchska M et al. (2018) Communication Between Enteric Neurons, Glia, and Nociceptors Underlies the Effects of Tachykinins on Neuroinflammation.; Cell Mol Gastroenterol Hepatol, 6: 321-344 |
|
GSE114780 |
| Delyfer, Marie-Noëlle et al. (2011) Transcriptomic analysis of human retinal detachment reveals both inflammatory response and photoreceptor death.; PLoS One, 6: e28791 |
|
GSE28133 |
| Delys, L et al. (2007) Gene expression and the biological phenotype of papillary thyroid carcinomas.; Oncogene, 26: 7894-903 |
|
GSE3950 |
| Delás, M Joaquina et al. (2017) lncRNA requirements for mouse acute myeloid leukemia and normal differentiation.; Elife, 6: [no pages] |
|
GSE90059 |
| Delás, M Joaquina et al. (2023) Developmental cell fate choice in neural tube progenitors employs two distinct cis-regulatory strategies.; Dev Cell, 58: 3-17.e8 |
|
GSE204920 |
| Delépine, Chloé et al. (2015) Astrocyte Transcriptome from the Mecp2(308)-Truncated Mouse Model of Rett Syndrome.; Neuromolecular Med, 17: 353-63 |
|
GSE56709 |
| Demais, Valérie et al. (2016) Reversal of Pathologic Lipid Accumulation in NPC1-Deficient Neurons by Drug-Promoted Release of LAMP1-Coated Lamellar Inclusions.; J Neurosci, 36: 8012-25 |
|
GSE75775 |
| Demaria, Marco et al. (2010) A STAT3-mediated metabolic switch is involved in tumour transformation and STAT3 addiction.; Aging (Albany NY), 2: 823-42 |
|
GSE21507 |
| Demetriou, Philippos et al. (2025) CD2 costimulation strength: A key regulator of T cell function and anti-tumor immunity that is epigenetically regulated.; iScience, 28: 113977 |
|
GSE308492 |
| Demeure, Michael J et al. (2013) PTTG1 overexpression in adrenocortical cancer is associated with poor survival and represents a potential therapeutic target.; Surgery, 154: 1405-16 |
|
GSE19750 |
| Demin, Konstantin A et al. (2022) Evolutionarily conserved gene expression patterns for affective disorders revealed using cross-species brain transcriptomic analyses in humans, rats and zebrafish.; Sci Rep, 12: 20836 |
|
GSE205325 |
| Demirel, Eda et al. (2021) RGS5 Attenuates Baseline Activity of ERK1/2 and Promotes Growth Arrest of Vascular Smooth Muscle Cells.; Cells, 10: [no pages] |
|
GSE174130 |
| Demmer, Ryan T et al. (2008) Transcriptomes in healthy and diseased gingival tissues.; J Periodontol, 79: 2112-24 |
|
GSE10334 |
| Demurtas, Martina et al. (2025) Neural crest induction requires SALL4-mediated BAF recruitment to lineage specific enhancers.; Development, 152: [no pages] |
|
GSE293821 |
| Den Boer, Monique L et al. (2009) A subtype of childhood acute lymphoblastic leukaemia with poor treatment outcome: a genome-wide classification study.; Lancet Oncol, 10: 125-34 |
|
GSE13351 GSE13425 |
| Denaxa, Myrto et al. (2018) Modulation of Apoptosis Controls Inhibitory Interneuron Number in the Cortex.; Cell Rep, 22: 1710-1721 |
|
GSE108161 |
| Dendoncker, Karen et al. (2019) TNF-α inhibits glucocorticoid receptor-induced gene expression by reshaping the GR nuclear cofactor profile.; Proc Natl Acad Sci U S A, 116: 12942-12951 |
|
GSE124088 |
| Deneault, Eric et al. (2018) Complete Disruption of Autism-Susceptibility Genes by Gene Editing Predominantly Reduces Functional Connectivity of Isogenic Human Neurons.; Stem Cell Reports, 11: 1211-1225 |
|
GSE107878 |
| Deng, Cesi et al. (2025) GABA produced by multiple bone marrow cell types regulates hematopoietic stem and progenitor cells.; Stem Cell Reports, 20: 102677 |
|
GSE294951 |
| Dębski, Konrad J et al. (2016) Etiology matters - Genomic DNA Methylation Patterns in Three Rat Models of Acquired Epilepsy.; Sci Rep, 6: 25668 |
|
GSE75120 GSE75402 |