List of all 16,789 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Eilon, Tali et al. (2008) Different gene-expression profiles for the poorly differentiated carcinoma and the highly differentiated papillary adenocarcinoma in mammary glands support distinct metabolic pathways.; BMC Cancer, 8: 270 |
|
GSE15119 |
| Einecke, Gunilla et al. (2010) A molecular classifier for predicting future graft loss in late kidney transplant biopsies.; J Clin Invest, 120: 1862-72 |
|
GSE21374 |
| Eintracht, Jonathan et al. (2024) Disruption of common ocular developmental pathways in patient-derived optic vesicle models of microphthalmia.; Stem Cell Reports, 19: 839-858 |
|
GSE265940 |
| Eipper-Mains, J E et al. (2013) Effects of cocaine and withdrawal on the mouse nucleus accumbens transcriptome.; Genes Brain Behav, 12: 21-33 |
|
GSE43410 |
| Eisenberg, Iris et al. (2008) Mitochondrial processes are impaired in hereditary inclusion body myopathy.; Hum Mol Genet, 17: 3663-74 |
|
GSE12648 |
| Eisinger, Brian E et al. (2013) Large scale expression changes of genes related to neuronal signaling and developmental processes found in lateral septum of postpartum outbred mice.; PLoS One, 8: e63824 |
|
GSE43627 |
| Eizirik, Décio L et al. (2012) The human pancreatic islet transcriptome: expression of candidate genes for type 1 diabetes and the impact of pro-inflammatory cytokines.; PLoS Genet, 8: e1002552 |
|
GSE35296 |
| Ejarque, Miriam et al. (2013) Characterization of the transcriptional activity of the basic helix-loop-helix (bHLH) transcription factor Atoh8.; Biochim Biophys Acta, 1829: 1175-83 |
|
GSE43536 |
| Ejlerskov, Patrick et al. (2015) Lack of Neuronal IFN-?-IFNAR Causes Lewy Body- and Parkinson's Disease-like Dementia.; Cell, 163: 324-39 |
|
GSE63815 |
| Eken, Ceylan et al. (2010) Ectosomes released by polymorphonuclear neutrophils induce a MerTK-dependent anti-inflammatory pathway in macrophages.; J Biol Chem, 285: 39914-21 |
|
GSE14419 |
| Ekin, Umut et al. (2021) Evaluation of ATAD2 as a Potential Target in Hepatocellular Carcinoma.; J Gastrointest Cancer, 52: 1356-1369 |
|
GSE178243 |
| Ekstrand, Mats I et al. (2014) Molecular profiling of neurons based on connectivity.; Cell, 157: 1230-42 |
|
GSE55800 |
| El Aidy, Sahar et al. (2013) The gut microbiota elicits a profound metabolic reorientation in the mouse jejunal mucosa during conventionalisation.; Gut, [no vol.]: [no pages] |
|
GSE32513 |
| El Ashkar, Sara et al. [Unknown date]LEDGF/p75 is dispensable for hematopoiesis but essential for MLL-rearranged leukemogenesis.; Blood, 131: 95-107 |
|
GSE104138 |
| El Chartouni, Carol et al. (2010) Comprehensive analysis of TLR4-induced transcriptional responses in interleukin 4-primed mouse macrophages.; Immunobiology, 215: 780-7 |
|
GSE21895 |
| El Hayek, Lauretta et al. (2020) KDM5Amutations identified in autism spectrum disorder using forward genetics.; Elife, 9: [no pages] |
|
GSE147435 |
| El Hayek, Lauretta et al. (2023) Disruption of the autism gene and chromatin regulator KDM5A alters hippocampal cell identity.; Sci Adv, 9: eadi0074 |
|
GSE235490 |
| El Kasmi, Karim C et al. (2006) General nature of the STAT3-activated anti-inflammatory response.; J Immunol, 177: 7880-8 |
|
GSE5589 |
| El Kasmi, Karim C et al. (2007) Cutting edge: A transcriptional repressor and corepressor induced by the STAT3-regulated anti-inflammatory signaling pathway.; J Immunol, 179: 7215-9 |
|
GSE9509 |
| El Wakil, Abeer et al. (2012) Dkk3 is a component of the genetic circuitry regulating aldosterone biosynthesis in the adrenal cortex.; Hum Mol Genet, 21: 4922-9 |
|
GSE37825 |
| El Waly, Bilal et al. (2022) Neuroblasts contribute to oligodendrocytes generation upon demyelination in the adult mouse brain.; iScience, 25: 105102 |
|
GSE130355 |
| El-Chaar, Nader N et al. (2014) Genomic classification of the RAS network identifies a personalized treatment strategy for lung cancer.; Mol Oncol, 8: 1339-54 |
|
GSE47206 |
| El-Okdi, Nasser et al. (2008) Effects of cardiotonic steroids on dermal collagen synthesis and wound healing.; J Appl Physiol (1985), 105: 30-6 |
|
GSE9806 |
| El-Saafin, Farrah et al. (2022) Loss of TAF8 causes TFIID dysfunction and p53-mediated apoptotic neuronal cell death.; Cell Death Differ, 29: 1013-1027 |
|
GSE198503 GSE198502 |
| El-Sehemy, Ahmed et al. (2020) Norrin mediates tumor-promoting and -suppressive effects in glioblastoma via Notch and Wnt.; J Clin Invest, 130: 3069-3086 |
|
GSE128255 |
| El-Zaatari, Mohamad et al. (2013) Gli1 deletion prevents Helicobacter-induced gastric metaplasia and expansion of myeloid cell subsets.; PLoS One, 8: e58935 |
|
GSE43693 |
| Elahi, Lubayna S et al. (2024) Valproic acid targets IDH1 mutants through alteration of lipid metabolism.; NPJ Metab Health Dis, 2: 20 |
|
GSE273401 GSE273404 |
| Elangovan, Ashuvinee et al. (2023) WCRC-25: A novel luminal Invasive Lobular Carcinoma cell line model.; bioRxiv, [no vol.]: [no pages] |
|
GSE221512 |
| Elashoff, Michael R et al. (2011) Development of a blood-based gene expression algorithm for assessment of obstructive coronary artery disease in non-diabetic patients.; BMC Med Genomics, 4: 26 |
|
GSE20680 GSE20681 |
| Elbaz, Benayahu et al. (2022) Sensory neurons display cell-type-specific vulnerability to loss of neuron-glia interactions.; Cell Rep, 40: 111130 |
|
GSE205461 |
| Elbaz, Benayahu et al. (2024) The bone transcription factor Osterix controls extracellular matrix- and node of Ranvier-related gene expression in oligodendrocytes.; Neuron, 112: 247-263.e6 |
|
GSE221192 |
| Elbein, Steven C et al. (2012) Genetic risk factors for type 2 diabetes: a trans-regulatory genetic architecture?; Am J Hum Genet, 91: 466-77 |
|
GSE40234 |
| Elchaninov, Andrey et al. (2024) Mimicking the cellular environment does not cause monocyte-derived macrophages to become phenotypically similar to Kupffer cells.; Immunol Cell Biol, 102: 381-395 |
|
GSE236447 |
| Elcheva, Irina et al. (2014) Direct induction of haematoendothelial programs in human pluripotent stem cells by transcriptional regulators.; Nat Commun, 5: 4372 |
|
GSE57395 |
| Eldred, Kiara C et al. [Unknown date]Thyroid hormone signaling specifies cone subtypes in human retinal organoids.; Science, 362: [no pages] |
|
GSE119320 |
| Eldredge, Laurie C et al. (2008) Abnormal sympathetic nervous system development and physiological dysautonomia in Egr3-deficient mice.; Development, 135: 2949-57 |
|
GSE2864 |
| Elgosbi, Marwa et al. (2024) Hypothermic oxygenated machine perfusion influences the immunogenicity of donor livers in humans.; Liver Transpl, [no vol.]: [no pages] |
|
GSE276531 |
| Elhassan, Yasir S et al. (2019) Nicotinamide Riboside Augments the Aged Human Skeletal Muscle NAD+Metabolome and Induces Transcriptomic and Anti-inflammatory Signatures.; Cell Rep, 28: 1717-1728.e6 |
|
GSE133261 |
| Elitt, Matthew S et al. [Unknown date]Chemical Screening Identifies Enhancers of Mutant Oligodendrocyte Survival and Unmasks a Distinct Pathological Phase in Pelizaeus-Merzbacher Disease.; Stem Cell Reports, 11: 711-726 |
|
GSE111595 |
| Elizalde, María et al. (2014) Splicing regulator SLU7 is essential for maintaining liver homeostasis.; J Clin Invest, 124: 2909-20 |
|
GSE54090 |
| Elkabetz, Yechiel et al. (2008) Human ES cell-derived neural rosettes reveal a functionally distinct early neural stem cell stage.; Genes Dev, 22: 152-65 |
|
GSE9921 |
| Elkahloun, Abdel G et al. (2016) An integrative genome-wide transcriptome reveals that candesartan is neuroprotective and a candidate therapeutic for Alzheimer's disease.; Alzheimers Res Ther, 8: 5 |
|
GSE67036 |
| Elkahloun, Abdel G et al. (2019) Telmisartan Protects a Microglia Cell Line from LPS Injury Beyond AT1 Receptor Blockade or PPAR? Activation.; Mol Neurobiol, 56: 3193-3210 |
|
GSE108671 |
| Elkjaer, Maria L et al. [Unknown date]Molecular signature of different lesion types in the brain white matter of patients with progressive multiple sclerosis.; Acta Neuropathol Commun, 7: 205 |
|
GSE138614 |
| Elkon, Ran et al. (2005) Dissection of a DNA-damage-induced transcriptional network using a combination of microarrays, RNA interference and computational promoter analysis.; Genome Biol, 6: R43 |
|
GSE1676 |
| Elkon, Ran et al. (2012) E2F mediates enhanced alternative polyadenylation in proliferation.; Genome Biol, 13: R59 |
|
GSE33592 |
| Elliott, Kelsey H et al. (2023) Identification of a heterogeneous and dynamic ciliome during embryonic development and cell differentiation.; Development, 150: [no pages] |
|
GSE147522 |
| Ellis, Matthew J et al. (2011) Randomized phase II neoadjuvant comparison between letrozole, anastrozole, and exemestane for postmenopausal women with estrogen receptor-rich stage 2 to 3 breast cancer: clinical and biomarker outcomes and predictive value of the baseline PAM50-based intrinsic subtype--ACOSOG Z1031.; J Clin Oncol, 29: 2342-9 |
|
GSE26082 |
| Ellis, Matthew J et al. (2012) Whole-genome analysis informs breast cancer response to aromatase inhibition.; Nature, 486: 353-60 |
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GSE29442 |
| Ellis, Matthew J et al. (2017) Ki67 Proliferation Index as a Tool for Chemotherapy Decisions During and After Neoadjuvant Aromatase Inhibitor Treatment of Breast Cancer: Results From the American College of Surgeons Oncology Group Z1031 Trial (Alliance).; J Clin Oncol, 35: 1061-1069 |
|
GSE87411.2 |
| Ellsworth, Darrell L et al. (2014) Intensive cardiovascular risk reduction induces sustainable changes in expression of genes and pathways important to vascular function.; Circ Cardiovasc Genet, 7: 151-60 |
|
GSE46097 |
| Elmore, Monica R P et al. (2018) Replacement of microglia in the aged brain reverses cognitive, synaptic, and neuronal deficits in mice.; Aging Cell, 17: e12832 |
|
GSE94042 |
| Elmén, Joacim et al. (2008) Antagonism of microRNA-122 in mice by systemically administered LNA-antimiR leads to up-regulation of a large set of predicted target mRNAs in the liver.; Nucleic Acids Res, 36: 1153-62 |
|
GSE13948 |
| Elo, Laura L et al. (2010) Genome-wide profiling of interleukin-4 and STAT6 transcription factor regulation of human Th2 cell programming.; Immunity, 32: 852-62 |
|
GSE17851 |
| Elsamad, Ghadir et al. (2023) Ageing restructures the transcriptome of the hypothalamic supraoptic nucleus and alters the response to dehydration.; NPJ Aging, 9: 12 |
|
GSE214353 |
| Elsen, Gina E et al. (2013) The protomap is propagated to cortical plate neurons through an Eomes-dependent intermediate map.; Proc Natl Acad Sci U S A, 110: 4081-6 |
|
GSE43387 |
| Elsen, Gina E et al. (2018) The Epigenetic Factor Landscape of Developing Neocortex Is Regulated by Transcription Factors Pax6? Tbr2? Tbr1.; Front Neurosci, 12: 571 |
|
GSE115703 |
| Elser, Benjamin A et al. (2020) Combined maternal exposure to cypermethrin and stress affect embryonic brain and placental outcomes in mice.; Toxicol Sci, [no vol.]: [no pages] |
|
GSE144511 |
| Elsesser, Olga et al. (2019) Chromatin remodeler Ep400 ensures oligodendrocyte survival and is required for myelination in the vertebrate central nervous system.; Nucleic Acids Res, 47: 6208-6224 |
|
GSE119127 |
| Elsässer, Simon J et al. (2016) Genetic code expansion in stable cell lines enables encoded chromatin modification.; Nat Methods, 13: 158-64 |
|
GSE73823 |
| ElTanbouly, Mohamed A et al. (2024) Role of affinity in plasma cell development in the germinal center light zone.; J Exp Med, 221: [no pages] |
|
GSE246382 |
| Elvidge, Gareth P et al. (2006) Concordant regulation of gene expression by hypoxia and 2-oxoglutarate-dependent dioxygenase inhibition: the role of HIF-1alpha, HIF-2alpha, and other pathways.; J Biol Chem, 281: 15215-26 |
|
GSE3188 |
| Elzinga, Sarah E et al. (2023) Transcriptomic analysis of diabetic kidney disease and neuropathy in mouse models of type 1 and type 2 diabetes.; Dis Model Mech, 16: [no pages] |
|
GSE222776 |
| Ema, Akira et al. (2015) Identification of EGFR expression status association with metastatic lymph node density (ND) by expression microarray analysis of advanced gastric cancer.; Cancer Med, 4: 90-100 |
|
GSE51725 |
| Emadali, Anouk et al. (2013) Identification of a novel BET bromodomain inhibitor-sensitive, gene regulatory circuit that controls Rituximab response and tumour growth in aggressive lymphoid cancers.; EMBO Mol Med, 5: 1180-95 |
|
GSE46873 |
| Emery, Ben et al. (2009) Myelin gene regulatory factor is a critical transcriptional regulator required for CNS myelination.; Cell, 138: 172-85 |
|
GSE15303 |
| Emery, Lyndsey A et al. (2009) Early dysregulation of cell adhesion and extracellular matrix pathways in breast cancer progression.; Am J Pathol, 175: 1292-302 |
|
GSE16873 |
| Emery, Martine et al. (2016) Biological Characterization of Gene Response to Insulin-Induced Hypoglycemia in Mouse Retina.; PLoS One, 11: e0150266 |
|
GSE67523 |
| Emisoglu-Kulahli, Handan et al. (2020) Transcriptome analysis of the circadian clock gene BMAL1 deletion with opposite carcinogenic effects.; Funct Integr Genomics, [no vol.]: [no pages] |
|
GSE157069 |
| Emmons, Michael F et al. (2023) HDAC8-mediated inhibition of EP300 drives a transcriptional state that increases melanoma brain metastasis.; Nat Commun, 14: 7759 |
|
GSE218625 |
| Emri, Eszter et al. (2020) A Multi-Omics Approach Identifies Key Regulatory Pathways Induced by Long-Term Zinc Supplementation in Human Primary Retinal Pigment Epithelium.; Nutrients, 12: [no pages] |
|
GSE156452 |
| Enard, Wolfgang et al. (2009) A humanized version of Foxp2 affects cortico-basal ganglia circuits in mice.; Cell, 137: 961-71 |
|
GSE13588 |
| Enders, Lennart et al. (2023) Pharmacological perturbation of the phase-separating protein SMNDC1.; Nat Commun, 14: 4504 |
|
GSE231600 |
| Enders, Michael et al. (2023) Impact of the Voltage-Gated Calcium Channel Antagonist Nimodipine on the Development of Oligodendrocyte Precursor Cells.; Int J Mol Sci, 24: [no pages] |
|
GSE221939 |
| Endo, Shinya et al. (2024) Decreased PU.1 expression in mature B cells induces lymphomagenesis.; Cancer Sci, 115: 3890-3901 |
|
GSE117631 |
| Endo, Takeshi et al. (2022) Mature but not developing Schwann cells promote axon regeneration after peripheral nerve injury.; NPJ Regen Med, 7: 12 |
|
GSE188399 |
| Endo-Munoz, L et al. (2010) Osteosarcoma is characterised by reduced expression of markers of osteoclastogenesis and antigen presentation compared with normal bone.; Br J Cancer, 103: 73-81 |
|
GSE19276 |
| Endo-Munoz, Liliana et al. (2015) Progression of Osteosarcoma from a Non-Metastatic to a Metastatic Phenotype Is Causally Associated with Activation of an Autocrine and Paracrine uPA Axis.; PLoS One, 10: e0133592 |
|
GSE49003 |
| Endoh, Mitsuhiro et al. (2008) Polycomb group proteins Ring1A/B are functionally linked to the core transcriptional regulatory circuitry to maintain ES cell identity.; Development, 135: 1513-24 |
|
GSE10476 |
| Endres, Theresa et al. (2021) Ubiquitylation of MYC couples transcription elongation with double-strand break repair at active promoters.; Mol Cell, 81: 830-844.e13 |
|
GSE150203 |
| Eng, S Raisa et al. (2004) Coordinated regulation of gene expression by Brn3a in developing sensory ganglia.; Development, 131: 3859-70 |
|
GSE3895 |
| Eng, S Raisa et al. (2007) POU-domain factor Brn3a regulates both distinct and common programs of gene expression in the spinal and trigeminal sensory ganglia.; Neural Dev, 2: 3 |
|
GSE5658 |
| Engel, Daiane F et al. (2019) Impaired adult hippocampal neurogenesis in a mouse model of familial hypercholesterolemia: A role for the LDL receptor and cholesterol metabolism in adult neural precursor cells.; Mol Metab, 30: 1-15 |
|
GSE136797 GSE136792 |
| Engel, Mareen et al. (2018) The Role of m6A/m-RNA Methylation in Stress Response Regulation.; Neuron, 99: 389-403.e9 |
|
GSE113793 GSE113781 GSE113796 GSE113801.2 |
| Engeln, Michel et al. (2021) Individual differences in stereotypy and neuron subtype translatome with TrkB deletion.; Mol Psychiatry, 26: 1846-1859 |
|
GSE146274 |
| Engeln, Michel et al. (2022) Transcriptome profiling of the ventral pallidum reveals a role for pallido-thalamic neurons in cocaine reward.; Mol Psychiatry, [no vol.]: [no pages] |
|
GSE199725 |
| Engler, Jane R et al. (2012) Increased microglia/macrophage gene expression in a subset of adult and pediatric astrocytomas.; PLoS One, 7: e43339 |
|
GSE38330.2 GSE38330.1 |
| English, Sangeeta B et al. (2009) Use of Bayesian networks to probabilistically model and improve the likelihood of validation of microarray findings by RT-PCR.; J Biomed Inform, 42: 287-95 |
|
GSE1816 |
| Engstrom, Amanda K et al. [Unknown date]The inhibition of LSD1 via sequestration contributes to tau-mediated neurodegeneration.; Proc Natl Acad Sci U S A, 117: 29133-29143 |
|
GSE160151 |
| Engstrom, Lars D et al. (2023) MRTX1719 Is an MTA-Cooperative PRMT5 Inhibitor That Exhibits Synthetic Lethality in Preclinical Models and Patients with MTAP-Deleted Cancer.; Cancer Discov, 13: 2412-2431 |
|
GSE240145 |
| Enis, David R et al. (2008) Antiapoptotic activities of bcl-2 correlate with vascular maturation and transcriptional modulation of human endothelial cells.; Endothelium, 15: 59-71 |
|
GSE10710 |
| Enjuanes, Anna et al. (2011) Identification of methylated genes associated with aggressive clinicopathological features in mantle cell lymphoma.; PLoS One, 6: e19736 |
|
GSE22038 |