List of all 22,542 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Deng, Daiyong et al. (2024) NFAT5 governs cellular plasticity-driven resistance to KRAS-targeted therapy in pancreatic cancer.; J Exp Med, 221: [no pages] |
|
GSE252836 |
| Deng, James et al. (2026) Suppression of astrocyte BMP signaling improves molecular signatures and functional deficits in a fragile X syndrome mouse model.; Nat Commun, [no vol.]: [no pages] |
|
GSE263517 |
| Deng, Jiehui et al. (2021) ULK1 inhibition overcomes compromised antigen presentation and restores antitumor immunity in LKB1 mutant lung cancer.; Nat Cancer, 2: 503-514 |
|
GSE137396 |
| Deng, Jin et al. (2025) Temporal transcriptomic dynamics in rat spinal cord after tibial fracture unveil crosstalk between spinal cord and bone.; Sci Rep, 15: 32147 |
|
GSE230779 |
| Deng, Junhao et al. (2023) Early-phase rotator training impairs tissue repair and functional recovery after spinal cord injury.; Heliyon, 9: e18158 |
|
GSE193806 |
| Deng, Kaicheng et al. (2023) A biodegradable, flexible photonic patch for in vivo phototherapy.; Nat Commun, 14: 3069 |
|
GSE223691 |
| Deng, Lunbin et al. (2023) Nav1.7 is essential for nociceptor action potentials in the mouse in a manner independent of endogenous opioids.; Neuron, 111: 2642-2659.e13 |
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GSE213826 |
| Deng, Mengqiu et al. (2025) SIRT3 is required for the protective function of ketogenic diet on neural inflammation and neuropathic pain.; Int J Biol Sci, 21: 3011-3029 |
|
GSE277072 |
| Deng, Qing et al. (2024) SMARCA4 is a haploinsufficient B cell lymphoma tumor suppressor that fine-tunes centrocyte cell fate decisions.; Cancer Cell, 42: 605-622.e11 |
|
GSE254897 |
| Deng, Ruizhi et al. (2023) AMFR dysfunction causes autosomal recessive spastic paraplegia in human that is amenable to statin treatment in a preclinical model.; Acta Neuropathol, [no vol.]: [no pages] |
|
GSE202141 |
| Deng, Tao et al. (2013) HMGN1 modulates nucleosome occupancy and DNase I hypersensitivity at the CpG island promoters of embryonic stem cells.; Mol Cell Biol, 33: 3377-89 |
|
GSE44175 |
| Deng, Tao et al. (2015) Functional compensation among HMGN variants modulates the DNase I hypersensitive sites at enhancers.; Genome Res, 25: 1295-308 |
|
GSE66442 |
| Deng, Tingting et al. (2024) Toe1 promotes proliferation and differentiation of neural progenitor cells.; Heliyon, 10: e39535 |
|
GSE254608 GSE254609 |
| Deng, Tuo et al. (2013) Class II major histocompatibility complex plays an essential role in obesity-induced adipose inflammation.; Cell Metab, 17: 411-22 |
|
GSE44000 |
| Deng, Vivianne et al. (2007) FXYD1 is an MeCP2 target gene overexpressed in the brains of Rett syndrome patients and Mecp2-null mice.; Hum Mol Genet, 16: 640-50 |
|
GSE6955 |
| Deng, Wenjun et al. (2020) Transcriptomic characterization of microglia activation in a rat model of ischemic stroke.; J Cereb Blood Flow Metab, 40: S34-S48 |
|
GSE119904 GSE148350.1 GSE148350.2 |
| Deng, Wenxiang et al. (2023) Analysis of the mechanism of curcumin against osteoarthritis using metabolomics and transcriptomics.; Naunyn Schmiedebergs Arch Pharmacol, [no vol.]: [no pages] |
|
GSE243421 |
| Deng, Xiangyu et al. (2025) Biochemical profiling and structural basis of ADAR1-mediated RNA editing.; Mol Cell, 85: 1381-1394.e6 |
|
GSE285023 |
| Deng, Xiaoqian et al. (2022) Global Transcriptional and Epigenetic Reconfiguration during Chemical Reprogramming of Human Retinal Pigment Epithelial Cells into Photoreceptor-like Cells.; Cells, 11: [no pages] |
|
GSE192881 |
| Deng, Xinxian et al. (2011) Evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Drosophila melanogaster.; Nat Genet, 43: 1179-85 |
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GSE30567.1 GSE30567.3 |
| Deng, Yaqi et al. (2017) A reciprocal regulatory loop between TAZ/YAP and G-protein G?s regulates Schwann cell proliferation and myelination.; Nat Commun, 8: 15161 |
|
GSE94990.1 |
| Deng, Ying-Bing et al. (2010) Identification of genes preferentially methylated in hepatitis C virus-related hepatocellular carcinoma.; Cancer Sci, 101: 1501-10 |
|
GSE19665 |
| Deng, Yingfeng et al. (2013) The Xbp1s/GalE axis links ER stress to postprandial hepatic metabolism.; J Clin Invest, 123: 455-68 |
|
GSE39301 |
| Deng, Youping et al. (2010) In vitro gene regulatory networks predict in vivo function of liver.; BMC Syst Biol, 4: 153 |
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GSE19662 GSE19628 |
| Denholtz, L E et al. (2025) PV - Oligodendrocyte Interactions in the Infralimbic Cortex Promote Extracellular Plasticity after Safety Learning.; bioRxiv, [no vol.]: [no pages] |
|
GSE285736 |
| Denis, Jérôme Alexandre et al. (2011) Global transcriptional profiling of neural and mesenchymal progenitors derived from human embryonic stem cells reveals alternative developmental signaling pathways.; Stem Cells Dev, 20: 1395-409 |
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GSE8590 |
| Denk, Franziska et al. (2013) HDAC inhibitors attenuate the development of hypersensitivity in models of neuropathic pain.; Pain, 154: 1668-79 |
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GSE51295 GSE51294 |
| Denk, Franziska et al. (2016) Persistent Alterations in Microglial Enhancers in a Model of Chronic Pain.; Cell Rep, 15: 1771-81 |
|
GSE71133 |
| Denkena, Johanna et al. (2020) Neuronal activity regulates alternative exon usage.; Mol Brain, 13: 148 |
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GSE148028 |
| Denkert, Carsten et al. (2009) A prognostic gene expression index in ovarian cancer - validation across different independent data sets.; J Pathol, 218: 273-80 |
|
GSE14764 |
| Denninger, Jiyeon K et al. (2022) Robust Transcriptional Profiling and Identification of Differentially Expressed Genes With Low Input RNA Sequencing of Adult Hippocampal Neural Stem and Progenitor Populations.; Front Mol Neurosci, 15: 810722 |
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GSE189574 GSE189572 |
| Dennison, Kirsten L et al. (2018) Ept7, a quantitative trait locus that controls estrogen-induced pituitary lactotroph hyperplasia in rat, is orthologous to a locus in humans that has been associated with numerous cancer types and common diseases.; PLoS One, 13: e0204727 |
|
GSE4028 |
| Denny, Sarah K et al. (2016) Nfib Promotes Metastasis through a Widespread Increase in Chromatin Accessibility.; Cell, 166: 328-342 |
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GSE81257 |
| Denzler, Rémy et al. (2014) Assessing the ceRNA hypothesis with quantitative measurements of miRNA and target abundance.; Mol Cell, 54: 766-76 |
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GSE52801 |
| Deonaraine, Kristina K et al. (2020) Sex-specific peripheral and central responses to stress-induced depression and treatment in a mouse model.; J Neurosci Res, 98: 2541-2553 |
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GSE146845 |
| Depke, Maren et al. (2012) The alternative sigma factor B modulates virulence gene expression in a murine Staphylococcus aureus infection model but does not influence kidney gene expression pattern of the host.; Int J Med Microbiol, 302: 33-9 |
|
GSE28540 |
| Depner, Christopher M et al. (2013) Docosahexaenoic acid attenuates hepatic inflammation, oxidative stress, and fibrosis without decreasing hepatosteatosis in a Ldlr(-/-) mouse model of western diet-induced nonalcoholic steatohepatitis.; J Nutr, 143: 315-23 |
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GSE215224 |
| DePoy, Lauren M et al. (2024) Adolescent circadian rhythm disruption increases reward and risk-taking.; Front Neurosci, 18: 1478508 |
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GSE282275 |
| Depp, Constanze et al. (2023) Myelin dysfunction drives amyloid-β deposition in models of Alzheimer's disease.; Nature, 618: 349-357 |
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GSE208683 |
| Deppmann, Christopher D et al. (2008) A model for neuronal competition during development.; Science, 320: 369-73 |
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GSE10498 |
| Der, Sandy D et al. (2014) Validation of a histology-independent prognostic gene signature for early-stage, non-small-cell lung cancer including stage IA patients.; J Thorac Oncol, 9: 59-64 |
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GSE50081 |
| Derbinski, Jens et al. (2005) Promiscuous gene expression in thymic epithelial cells is regulated at multiple levels.; J Exp Med, 202: 33-45 |
|
GSE2585 |
| DeRosa, Brooke A et al. (2018) Convergent Pathways in Idiopathic Autism Revealed by Time Course Transcriptomic Analysis of Patient-Derived Neurons.; Sci Rep, 8: 8423 |
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GSE124308 |
| Derosa, C A et al. (2012) Elevated osteonectin/SPARC expression in primary prostate cancer predicts metastatic progression.; Prostate Cancer Prostatic Dis, 15: 210 |
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GSE32448 |
| Derrick, Tamsyn et al. (2019) The conjunctival transcriptome in Ethiopians after trichiasis surgery: associations with the development of eyelid contour abnormalities and the effect of oral doxycycline treatment.; Wellcome Open Res, 4: 130 |
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GSE135455 |
| Derti, Adnan et al. (2012) A quantitative atlas of polyadenylation in five mammals.; Genome Res, 22: 1173-83 |
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GSE30198.4 GSE30198.2 |
| Deryckere, Astrid et al. (2020) Multifaceted actions of Zeb2 in postnatal neurogenesis from the ventricular-subventricular zone to the olfactory bulb.; Development, 147: [no pages] |
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GSE103003 |
| Desai, Aditi et al. (2009) Microarray-based characterization of a colony assay used to investigate endothelial progenitor cells and relevance to endothelial function in humans.; Arterioscler Thromb Vasc Biol, 29: 121-7 |
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GSE12155 |
| Desai, Ankit A et al. (2012) A novel molecular signature for elevated tricuspid regurgitation velocity in sickle cell disease.; Am J Respir Crit Care Med, 186: 359-68 |
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GSE38528 |
| Desai, Kinjal et al. (2025) OLIG2 mediates a rare targetable stem cell fate transition in sonic hedgehog medulloblastoma.; Nat Commun, 16: 1092 |
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GSE234105 |
| Desai, Pankaj B et al. (2024) A Phase 0/I Pharmacokinetic and Pharmacodynamics and Safety and Tolerability Study of Letrozole in Combination with Standard Therapy in Recurrent High-Grade Gliomas.; Clin Cancer Res, 30: 2068-2077 |
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GSE255754 |
| Desai, Parth et al. (2024) Microenvironment shapes small-cell lung cancer neuroendocrine states and presents therapeutic opportunities.; Cell Rep Med, 5: 101610 |
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GSE267310 GSE267560 |
| Desai, Radha et al. (2017) ATAD3 gene cluster deletions cause cerebellar dysfunction associated with altered mitochondrial DNA and cholesterol metabolism.; Brain, 140: 1595-1610 |
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GSE86550 |
| Desbordes, Sabrina C et al. (2008) High-throughput screening assay for the identification of compounds regulating self-renewal and differentiation in human embryonic stem cells.; Cell Stem Cell, 2: 602-12 |
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GSE11302 |
| Descalzi, Giannina et al. (2017) Neuropathic pain promotes adaptive changes in gene expression in brain networks involved in stress and depression.; Sci Signal, 10: [no pages] |
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GSE91396 |
| Desgeorges, Thibaut et al. (2024) Histone lactylation in macrophages is predictive for gene expression changes during ischemia induced-muscle regeneration.; Mol Metab, 83: 101923 |
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GSE254128 |
| Deshpande, Sachin S et al. (2022) P75 neurotrophin receptor controls subventricular zone neural stem cell migration after stroke.; Cell Tissue Res, 387: 415-431 |
|
GSE152396 |
| Deshpande, Tushar et al. (2026) Vascular basement membrane laminins modulate functional zonation of cerebral microvessels.; J Cereb Blood Flow Metab, [no vol.]: 271678X251410040 |
|
GSE308748 |
| Desideri, Fabio et al. (2024) CyCoNP lncRNA establishes cis and trans RNA-RNA interactions to supervise neuron physiology.; Nucleic Acids Res, 52: 9936-9952 |
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GSE245461 |
| Desiderio, Simon et al. (2019) Prdm12 Directs Nociceptive Sensory Neuron Development by Regulating the Expression of the NGF Receptor TrkA.; Cell Rep, 26: 3522-3536.e5 |
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GSE118187 |
| Desiderio, Simon et al. (2024) Touch receptor end-organ innervation and function require sensory neuron expression of the transcription factor Meis2.; Elife, 12: [no pages] |
|
GSE223788 |
| Desimone, Michelle C et al. (2013) Pleiotropic effects of the trichloroethylene-associated P81S VHL mutation on metabolism, apoptosis, and ATM-mediated DNA damage response.; J Natl Cancer Inst, [no vol.]: [no pages] |
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GSE37464 |
| DeSisto, John et al. (2025) PRMT5 Maintains Tumor Stem Cells to Promote Pediatric High-Grade Glioma Tumorigenesis.; Mol Cancer Res, 23: 107-118 |
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GSE261512 |
| Desjardins, Cody A et al. (2017) Antagonistic regulation of cell-cycle and differentiation gene programs in neonatal cardiomyocytes by homologous MEF2 transcription factors.; J Biol Chem, 292: 10613-10629 |
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GSE92861 |
| Desmaris, Elodie et al. (2018) DMRT5, DMRT3, and EMX2 Cooperatively RepressGsx2at the Pallium-Subpallium Boundary to Maintain Cortical Identity in Dorsal Telencephalic Progenitors.; J Neurosci, 38: 9105-9121 |
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GSE108611 |
| Desmedt, Christine et al. (2007) Strong time dependence of the 76-gene prognostic signature for node-negative breast cancer patients in the TRANSBIG multicenter independent validation series.; Clin Cancer Res, 13: 3207-14 |
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GSE7390 |
| Desmedt, Christine et al. (2009) The Gene expression Grade Index: a potential predictor of relapse for endocrine-treated breast cancer patients in the BIG 1-98 trial.; BMC Med Genomics, 2: 40 |
|
GSE16391 |
| Desmedt, Christine et al. (2011) Multifactorial approach to predicting resistance to anthracyclines.; J Clin Oncol, 29: 1578-86 |
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GSE16446 |
| Desmedt, Christine et al. (2012) Characterization and clinical evaluation of CD10+ stroma cells in the breast cancer microenvironment.; Clin Cancer Res, 18: 1004-14 |
|
GSE27120 |
| Desoteux, Matthis et al. (2023) Transcriptomic evidence for tumor-specific beneficial or adverse effects of TGFβ pathway inhibition on the prognosis of patients with liver cancer.; FEBS Open Bio, 13: 1278-1290 |
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GSE211806 |
| DeSpenza, Tyrone et al. (2025) PTEN mutations impair CSF dynamics and cortical networks by dysregulating periventricular neural progenitors.; Nat Neurosci, 28: 536-557 |
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GSE280368.2 |
| Desruisseaux, Mahalia S et al. (2010) Alterations in the Brain Transcriptome inPlasmodium BergheiANKA Infected Mice.; J Neuroparasitology, 1: [no pages] |
|
GSE24086 |
| Desu, Haritha L et al. (2021) TNFR2 Signaling Regulates the Immunomodulatory Function of Oligodendrocyte Precursor Cells.; Cells, 10: [no pages] |
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GSE180604 GSE78082 |
| Detwiller, Kara Y et al. (2005) Analysis of hypoxia-related gene expression in sarcomas and effect of hypoxia on RNA interference of vascular endothelial cell growth factor A.; Cancer Res, 65: 5881-9 |
|
GSE2719 |
| Deutschman, Emily et al. (2019) Condensin II protein dysfunction impacts mitochondrial respiration and mitochondrial oxidative stress responses.; J Cell Sci, 132: [no pages] |
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GSE139540 |
| Devailly, Guillaume et al. (2015) Dynamics of MBD2 deposition across methylated DNA regions during malignant transformation of human mammary epithelial cells.; Nucleic Acids Res, 43: 5838-54 |
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GSE63234.2 GSE63234.1 |
| Devarajan, Priyadharshini et al. (2023) Cytotoxic CD4 development requires CD4 effectors to concurrently recognize local antigen and encounter type I IFN-induced IL-15.; Cell Rep, 42: 113182 |
|
GSE225552 |
| Devaud, Christel et al. (2015) Cross-talk between tumors can affect responses to therapy.; Oncoimmunology, 4: e975572 |
|
GSE56905 |
| DeVault, Laura et al. (2023) The response of Dual-Leucine Zipper Kinase (DLK) to nocodazole: evidence for a homeostatic cytoskeletal repair mechanism.; bioRxiv, [no vol.]: [no pages] |
|
GSE244883 |
| DeVeaux, S'Dravious A et al. (2024) Neuroinflammation underlies the development of social stress induced cognitive deficit in male sickle cell mice.; Exp Biol Med (Maywood), 249: 10361 |
|
GSE252778 |
| Devereaux, Jeannie et al. (2024) Alterations in tryptophan metabolism andde novoNAD+biosynthesis within the microbiota-gut-brain axis in chronic intestinal inflammation.; Front Med (Lausanne), 11: 1379335 |
|
GSE264317 |
| Deveson, Ira W et al. (2018) Universal Alternative Splicing of Noncoding Exons.; Cell Syst, 6: 245-255.e5 |
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GSE99637.1 GSE99637.2 |
| Devignot, Stéphanie et al. (2010) Genome-wide expression profiling deciphers host responses altered during dengue shock syndrome and reveals the role of innate immunity in severe dengue.; PLoS One, 5: e11671 |
|
GSE17924 |
| Devine, Michael J et al. (2011) Parkinson's disease induced pluripotent stem cells with triplication of the ?-synuclein locus.; Nat Commun, 2: 440 |
|
GSE28365 |
| Devine, W Patrick et al. (2014) Early patterning and specification of cardiac progenitors in gastrulating mesoderm.; Elife, 3: [no pages] |
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GSE58363 |
| Devjak, Rok et al. (2012) Cumulus cells gene expression profiling in terms of oocyte maturity in controlled ovarian hyperstimulation using GnRH agonist or GnRH antagonist.; PLoS One, 7: e47106 |
|
GSE34230 |
| Devlin, Benjamin A et al. (2025) Excitatory Neuron-Derived Interleukin-34 Controls Cortical Developmental Microglia Function.; bioRxiv, [no vol.]: [no pages] |
|
GSE290856.2 |
| Devlin, Benjamin A et al. (2025) Excitatory-neuron-derived interleukin-34 supports cortical developmental microglia function.; Immunity, 58: 1948-1965.e6 |
|
GSE290856.1 |