List of all 16,816 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Falero-Perez, Juliana et al. (2020) Retinal astrocytes transcriptome reveals Cyp1b1 regulates the expression of genes involved in cell adhesion and migration.; PLoS One, 15: e0231752 |
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GSE145103 |
| Falgreen, Steffen et al. (2015) Predicting response to multidrug regimens in cancer patients using cell line experiments and regularised regression models.; BMC Cancer, 15: 235 |
|
GSE53798 |
| Falini, Brunangelo et al. (2010) Multilineage dysplasia has no impact on biologic, clinicopathologic, and prognostic features of AML with mutated nucleophosmin (NPM1).; Blood, 115: 3776-86 |
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GSE18018 |
| Falk, Marni J et al. (2011) Probucol ameliorates renal and metabolic sequelae of primary CoQ deficiency in Pdss2 mutant mice.; EMBO Mol Med, 3: 410-27 |
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GSE27954 |
| Falkenberg, K J et al. [Unknown date]A genome scale RNAi screen identifies GLI1 as a novel gene regulating vorinostat sensitivity.; Cell Death Differ, 23: 1209-18 |
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GSE57871 |
| Fall, Ndate et al. (2007) Gene expression profiling of peripheral blood from patients with untreated new-onset systemic juvenile idiopathic arthritis reveals molecular heterogeneity that may predict macrophage activation syndrome.; Arthritis Rheum, 56: 3793-804 |
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GSE7753 |
| Fallahi, Mohammad et al. (2010) A Global Expression Switch Marks Pachytene Initiation during Mouse Male Meiosis.; Genes (Basel), 1: 469-83 |
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GSE21447 |
| Fallahi, Payam et al. (2013) Aspirin insensitive thrombophilia: transcript profiling of blood identifies platelet abnormalities and HLA restriction.; Gene, 520: 131-8 |
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GSE38511 |
| Fame, Ryann M et al. (2023) Defining diurnal fluctuations in mouse choroid plexus and CSF at high molecular, spatial, and temporal resolution.; Nat Commun, 14: 3720 |
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GSE161877 |
| Famulski, Konrad S et al. (2012) Molecular phenotypes of acute kidney injury in kidney transplants.; J Am Soc Nephrol, 23: 948-58 |
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GSE30718 |
| Fan, Amy C et al. (2023) RUNX1 loss renders hematopoietic and leukemic cells dependent on IL-3 and sensitive to JAK inhibition.; J Clin Invest, 133: [no pages] |
|
GSE231949 |
| Fan, Cuiqing et al. (2023) Kinase-independent role of mTOR and on-/off-target effects of an mTOR kinase inhibitor.; Leukemia, 37: 2073-2081 |
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GSE172248 GSE235097 GSE172247 |
| Fan, Jianguo et al. [Unknown date]Maturation arrest in early postnatal sensory receptors by deletion of the miR-183/96/182 cluster in mouse.; Proc Natl Acad Sci U S A, 114: E4271-E4280 |
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GSE95852 |
| Fan, Jinshui et al. (2010) Time-dependent c-Myc transactomes mapped by Array-based nuclear run-on reveal transcriptional modules in human B cells.; PLoS One, 5: e9691 |
|
GSE17109 |
| Fan, Meiyun et al. (2006) Diverse gene expression and DNA methylation profiles correlate with differential adaptation of breast cancer cells to the antiestrogens tamoxifen and fulvestrant.; Cancer Res, 66: 11954-66 |
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GSE5840 |
| Fan, Minghua et al. (2022) JADE2 Is Essential for Hippocampal Synaptic Plasticity and Cognitive Functions in Mice.; Biol Psychiatry, [no vol.]: [no pages] |
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GSE197460 |
| Fan, Qingyuan et al. (2019) The intracellular domain of CX3CL1 regulates adult neurogenesis and Alzheimer's amyloid pathology.; J Exp Med, 216: 1891-1903 |
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GSE129722 |
| Fan, Wen et al. (2005) Distinct subsets of primary effusion lymphoma can be identified based on their cellular gene expression profile and viral association.; J Virol, 79: 1244-51 |
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GSE2149 |
| Fan, Yichao et al. (2017) FXR1 regulates transcription and is required for growth of human cancer cells withTP53/FXR2homozygous deletion.; Elife, 6: [no pages] |
|
GSE101754 |
| Fan, Yilin et al. (2021) LRR1-mediated replisome disassembly promotes DNA replication by recycling replisome components.; J Cell Biol, 220: [no pages] |
|
GSE173509 |
| Fan, Yuanlan et al. (2022) Systematic analysis of inflammation and pain pathways in a mouse model of gout.; Mol Pain, 18: 17448069221097760 |
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GSE190138 |
| Fan, Yue et al. (2024) Unveiling inflammatory and prehypertrophic cell populations as key contributors to knee cartilage degeneration in osteoarthritis using multi-omics data integration.; Ann Rheum Dis, 83: 926-944 |
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GSE255460 |
| Fan, Zenghua et al. (2017) A class of circadian long non-coding RNAs mark enhancers modulating long-range circadian gene regulation.; Nucleic Acids Res, 45: 5720-5738 |
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GSE77572 |
| Fan, Zheng et al. (2021) Exercise-induced angiogenesis is dependent on metabolically primed ATF3/4+endothelial cells.; Cell Metab, 33: 1793-1807.e9 |
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GSE174785 |
| Fan, Zheng et al. (2024) Macrophages preserve endothelial cell specialization in the adrenal gland to modulate aldosterone secretion and blood pressure.; Cell Rep, 43: 114395 |
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GSE245127 |
| Fan, Zhu et al. (2023) Mechanisms of action of Fu Fang Gang Liu liquid in treating condyloma acuminatum by network pharmacology and experimental validation.; BMC Complement Med Ther, 23: 128 |
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GSE223380 |
| Fancy, Stephen P J et al. (2009) Dysregulation of the Wnt pathway inhibits timely myelination and remyelination in the mammalian CNS.; Genes Dev, 23: 1571-85 |
|
GSE19403 |
| Fandy, Tamer E et al. (2009) Early epigenetic changes and DNA damage do not predict clinical response in an overlapping schedule of 5-azacytidine and entinostat in patients with myeloid malignancies.; Blood, 114: 2764-73 |
|
GSE16625 |
| Fang, Dong et al. (2018) H3.3K27M mutant proteins reprogram epigenome by sequestering the PRC2 complex to poised enhancers.; Elife, 7: [no pages] |
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GSE130407 |
| Fang, Evandro F et al. [Unknown date]Mitophagy inhibits amyloid-? and tau pathology and reverses cognitive deficits in models of Alzheimer's disease.; Nat Neurosci, 22: 401-412 |
|
GSE111737 |
| Fang, Evandro Fei et al. (2014) Defective mitophagy in XPA via PARP-1 hyperactivation and NAD(+)/SIRT1 reduction.; Cell, 157: 882-896 |
|
GSE55485 |
| Fang, Fang et al. (2014) Decitabine reactivated pathways in platinum resistant ovarian cancer.; Oncotarget, 5: 3579-89 |
|
GSE55410 |
| Fang, Feng et al. (2013) A synthetic TLR3 ligand mitigates profibrotic fibroblast responses by inducing autocrine IFN signaling.; J Immunol, 191: 2956-66 |
|
GSE47616 |
| Fang, Hsin-Yu et al. (2009) Hypoxia-inducible factors 1 and 2 are important transcriptional effectors in primary macrophages experiencing hypoxia.; Blood, 114: 844-59 |
|
GSE16099 |
| Fang, Jiaxi et al. (2024) Integrative analysis of transcriptome and metabolome provide new insights into mechanisms of Capilliposide A against cisplatin-induced nephrotoxicity.; J Pharm Biomed Anal, 238: 115814 |
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GSE246133 |
| Fang, Kai et al. (2011) Temporal genomewide expression profiling of DSS colitis reveals novel inflammatory and angiogenesis genes similar to ulcerative colitis.; Physiol Genomics, 43: 43-56 |
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GSE22307 |
| Fang, Kun et al. (2021) Disruption of Circadian Rhythms by Ambient Light during Neurodevelopment Leads to Autistic-like Molecular and Behavioral Alterations in Adult Mice.; Cells, 10: [no pages] |
|
GSE189289 |
| Fang, Li-Pao et al. (2025) Oligodendrocyte precursor cells facilitate neuronal lysosome release.; Nat Commun, 16: 1175 |
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GSE285995 |
| Fang, Linglan et al. (2023) Reactivity-based RNA profiling for analyzing transcriptome interactions of small molecules in human cells.; STAR Protoc, 4: 102670 |
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GSE229331 |
| Fang, Meimiao et al. (2021) Epilepsy-Associated UBE3A Deficiency Downregulates Retinoic Acid Signalling Pathway.; Front Genet, 12: 681295 |
|
GSE168889 |
| Fang, Minxi et al. (2024) Hyperactivation of Hedgehog signaling impedes myelin development and repair via cholesterol dysregulation in oligodendrocytes.; iScience, 27: 111016 |
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GSE261881 |
| Fang, Shunchang et al. (2023) Differences in the neural basis and transcriptomic patterns in acute and persistent pain-related anxiety-like behaviors.; Front Mol Neurosci, 16: 1185243 |
|
GSE227946 |
| Fang, Shunchang et al. (2024) Sexually dimorphic control of affective state processing and empathic behaviors.; Neuron, [no vol.]: [no pages] |
|
GSE218615 |
| Fang, Wen-Tsen et al. (2014) Downregulation of a putative tumor suppressor BMP4 by SOX2 promotes growth of lung squamous cell carcinoma.; Int J Cancer, 135: 809-19 |
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GSE48871 |
| Fang, Yu et al. (2013) Gastroesophageal reflux activates the NF-?B pathway and impairs esophageal barrier function in mice.; Am J Physiol Gastrointest Liver Physiol, 305: G58-65 |
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GSE39629 |
| Fang, Zhuoqing et al. (2019) SOX21 Ensures Rostral Forebrain Identity by Suppression of WNT8B during Neural Regionalization of Human Embryonic Stem Cells.; Stem Cell Reports, 13: 1038-1052 |
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GSE110504 GSE138094 |
| Fang, Zijian et al. (2023) Tamoxifen for the treatment of myeloproliferative neoplasms: A Phase II clinical trial and exploratory analysis.; Nat Commun, 14: 7725 |
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GSE172022 GSE172023 |
| Fanti, Silvia et al. (2022) Circulating c-Met-Expressing Memory T Cells Define Cardiac Autoimmunity.; Circulation, 146: 1930-1945 |
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GSE186270 |
| Fantini, Valentina et al. (2024) Functional analysis and transcriptome profile of meninges and skin fibroblasts from human-aged donors.; Cell Prolif, [no vol.]: e13627 |
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GSE255684 |
| Farah, Omar et al. (2017) Porcupine-dependent Wnt activity within the uterine epithelium is essential for fertility.; Biol Reprod, 97: 688-697 |
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GSE96801 |
| Faraoni, Erika Y et al. (2023) CD73-Dependent Adenosine Signaling through Adora2b Drives Immunosuppression in Ductal Pancreatic Cancer.; Cancer Res, 83: 1111-1127 |
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GSE189129 GSE189128 |
| Farazi, Thalia A et al. (2011) MicroRNA sequence and expression analysis in breast tumors by deep sequencing.; Cancer Res, 71: 4443-53 |
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GSE29174 |
| Farber, Charles R et al. (2011) Mouse genome-wide association and systems genetics identify Asxl2 as a regulator of bone mineral density and osteoclastogenesis.; PLoS Genet, 7: e1002038 |
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GSE27483 |
| Farci, Patrizia et al. (2010) B cell gene signature with massive intrahepatic production of antibodies to hepatitis B core antigen in hepatitis B virus-associated acute liver failure.; Proc Natl Acad Sci U S A, 107: 8766-71 |
|
GSE14668 |
| Fardin, Paolo et al. (2009) Induction of epithelial mesenchimal transition and vasculogenesis in the lenses of Dbl oncogene transgenic mice.; PLoS One, 4: e7058 |
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GSE15694 |
| Fardin, Paolo et al. (2010) A biology-driven approach identifies the hypoxia gene signature as a predictor of the outcome of neuroblastoma patients.; Mol Cancer, 9: 185 |
|
GSE17714 |
| Fares, Iman et al. (2014) Cord blood expansion. Pyrimidoindole derivatives are agonists of human hematopoietic stem cell self-renewal.; Science, 345: 1509-12 |
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GSE57299 |
| Farge, Thomas et al. (2017) Chemotherapy-Resistant Human Acute Myeloid Leukemia Cells Are Not Enriched for Leukemic Stem Cells but Require Oxidative Metabolism.; Cancer Discov, 7: 716-735 |
|
GSE97346 |
| Farhy, Chen et al. (2013) Pax6 is required for normal cell-cycle exit and the differentiation kinetics of retinal progenitor cells.; PLoS One, 8: e76489 |
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GSE45143 |
| Farhy-Tselnicker, Isabella et al. (2017) Astrocyte-Secreted Glypican 4 Regulates Release of Neuronal Pentraxin 1 from Axons to Induce Functional Synapse Formation.; Neuron, 96: 428-445.e13 |
|
GSE86595 |
| Farhy-Tselnicker, Isabella et al. (2021) Activity-dependent modulation of synapse-regulating genes in astrocytes.; Elife, 10: [no pages] |
|
GSE161398 |
| Farina, Nicholas H et al. (2012) A role for RNA post-transcriptional regulation in satellite cell activation.; Skelet Muscle, 2: 21 |
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GSE38870 |
| Farjo, Rafal et al. (2008) Expression profiling after retinal detachment and reattachment: a possible role for aquaporin-0.; Invest Ophthalmol Vis Sci, 49: 511-21 |
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GSE5766 |
| Farjood, Farhad et al. (2023) Identifying biomarkers of heterogeneity and transplantation efficacy in retinal pigment epithelial cells.; J Exp Med, 220: [no pages] |
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GSE211187 |
| Farkas, Balint et al. (2009) BALB/c mice genetically susceptible to proteoglycan-induced arthritis and spondylitis show colony-dependent differences in disease penetrance.; Arthritis Res Ther, 11: R21 |
|
GSE13730 |
| Farkas, Lilla M et al. (2008) Insulinoma-associated 1 has a panneurogenic role and promotes the generation and expansion of basal progenitors in the developing mouse neocortex.; Neuron, 60: 40-55 |
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GSE12294 |
| Farkas, Michael H et al. (2022) Morphological, biochemical, and transcriptomic characterization of iPSC-derived human RPE cells from normal and Smith-Lemli-Opitz syndrome patients.; Mol Vis, 28: 394-411 |
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GSE185028 |
| Farmer, D'Juan T et al. [Unknown date]miR-205 is a critical regulator of lacrimal gland development.; Dev Biol, 427: 12-20 |
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GSE95108 |
| Farmer, Pierre et al. (2005) Identification of molecular apocrine breast tumours by microarray analysis.; Oncogene, 24: 4660-71 |
|
GSE1561 |
| Farmer, Pierre et al. (2009) A stroma-related gene signature predicts resistance to neoadjuvant chemotherapy in breast cancer.; Nat Med, 15: 68-74 |
|
GSE4779 |
| Farnoodian, Mitra et al. (2022) Cell-autonomous lipid-handling defects in Stargardt iPSC-derived retinal pigment epithelium cells.; Stem Cell Reports, 17: 2438-2450 |
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GSE198362 |
| Farnsworth, Aaron et al. (2010) Acetaminophen modulates the transcriptional response to recombinant interferon-beta.; PLoS One, 5: e11031 |
|
GSE18949 |
| Farrell, Kayla et al. (2024) Phosphorylation of RPT6 Controls Its Ability to Bind DNA and Regulate Gene Expression in the Hippocampus of Male Rats during Memory Formation.; J Neurosci, 44: [no pages] |
|
GSE237868 |
| Farrelly, Lorna A et al. (2019) Histone serotonylation is a permissive modification that enhances TFIID binding to H3K4me3.; Nature, 567: 535-539 |
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GSE106495.2 GSE106495.1 GSE117910 |
| Farrelly, Lorna A et al. (2022) Chromatin profiling in human neurons reveals aberrant roles for histone acetylation and BET family proteins in schizophrenia.; Nat Commun, 13: 2195 |
|
GSE144639 |
| Farris, Sean P et al. (2013) Fyn-dependent gene networks in acute ethanol sensitivity.; PLoS One, 8: e82435 |
|
GSE49028 |
| Farris, Shannon et al. (2017) Optimized Method for Robust Transcriptome Profiling of Minute Tissues Using Laser Capture Microdissection and Low-Input RNA-Seq.; Front Mol Neurosci, 10: 185 |
|
GSE95257 |
| Farris, Shannon et al. (2019) Hippocampal Subregions Express Distinct Dendritic Transcriptomes that Reveal Differences in Mitochondrial Function in CA2.; Cell Rep, 29: 522-539.e6 |
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GSE116342 GSE116328 |
| Farris, Stephen D et al. (2011) Mechanisms of urokinase plasminogen activator (uPA)-mediated atherosclerosis: role of the uPA receptor and S100A8/A9 proteins.; J Biol Chem, 286: 22665-77 |
|
GSE29028 |
| Farsi, Zohreh et al. (2023) Brain-region-specific changes in neurons and glia and dysregulation of dopamine signaling in Grin2a mutant mice.; Neuron, 111: 3378-3396.e9 |
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GSE218551 GSE218572.5 GSE218572.2 GSE218572.1 |
| Fasan, Annette et al. (2013) Frequency and prognostic impact of CEBPA proximal, distal and core promoter methylation in normal karyotype AML: a study on 623 cases.; PLoS One, 8: e54365 |
|
GSE34733 |
| Fasano, Christopher A et al. (2010) Efficient derivation of functional floor plate tissue from human embryonic stem cells.; Cell Stem Cell, 6: 336-47 |
|
GSE20573 |
| Fasching, Liana et al. (2015) TRIM28 represses transcription of endogenous retroviruses in neural progenitor cells.; Cell Rep, 10: 20-8 |
|
GSE45930 |
| Fasulo, Luisa et al. (2017) ProNGF Drives Localized and Cell Selective Parvalbumin Interneuron and Perineuronal Net Depletion in the Dentate Gyrus of Transgenic Mice.; Front Mol Neurosci, 10: 20 |
|
GSE70757 |
| Fatemi, S Hossein et al. (2006) Chronic olanzapine treatment causes differential expression of genes in frontal cortex of rats as revealed by DNA microarray technique.; Neuropsychopharmacology, 31: 1888-99 |
|
GSE2547 |
| Fathi, Ali et al. (2011) Comprehensive gene expression analysis of human embryonic stem cells during differentiation into neural cells.; PLoS One, 6: e22856 |
|
GSE28633 |
| Fathi, Ali et al. (2022) Chemically induced senescence in human stem cell-derived neurons promotes phenotypic presentation of neurodegeneration.; Aging Cell, 21: e13541 |
|
GSE141028 |
| Fatima, Azra et al. (2020) The ubiquitin-conjugating enzyme UBE2K determines neurogenic potential through histone H3 in human embryonic stem cells.; Commun Biol, 3: 262 |
|
GSE146701 |
| Fält, Susann et al. (2005) Identification of progression markers in B-CLL by gene expression profiling.; Exp Hematol, 33: 883-93 |
|
GSE2403 |