List of all 22,542 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Dowdle, James A et al. (2013) Mouse BAZ1A (ACF1) is dispensable for double-strand break repair but is essential for averting improper gene expression during spermatogenesis.; PLoS Genet, 9: e1003945 |
|
GSE41303 |
| Dower, Ken et al. (2008) Innate immune responses to TREM-1 activation: overlap, divergence, and positive and negative cross-talk with bacterial lipopolysaccharide.; J Immunol, 180: 3520-34 |
|
GSE9988 |
| Doyard, M et al. (2012) Iron excess limits HHIPL-2 gene expression and decreases osteoblastic activity in human MG-63 cells.; Osteoporos Int, 23: 2435-45 |
|
GSE30774 |
| Doyle, Colm et al. (2025) DNA G-quadruplex structures act as functional elements in α- and β-globin enhancers.; Genome Biol, 26: 155 |
|
GSE267666.1 GSE267666.2 |
| Doyle, Daniel Z et al. (2021) Chromatin remodelerArid1aregulates subplate neuron identity and wiring of cortical connectivity.; Proc Natl Acad Sci U S A, 118: [no pages] |
|
GSE163273 |
| Doyle, Joseph P et al. (2008) Application of a translational profiling approach for the comparative analysis of CNS cell types.; Cell, 135: 749-62 |
|
GSE13379 |
| Doyle, K R et al. (2012) Validating a gene expression signature proposed to differentiate liposarcomas that use different telomere maintenance mechanisms.; Oncogene, 31: 265-6; author reply 267-8 |
|
GSE20559 |
| Doyle, William J et al. (2023) Farnesol brain transcriptomics in CNS inflammatory demyelination.; Clin Immunol, 255: 109752 |
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GSE233583 |
| Dozmorov, Igor et al. (2013) Evidence of dynamically dysregulated gene expression pathways in hyperresponsive B cells from African American lupus patients.; PLoS One, 8: e71397 |
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GSE37573 |
| Drabek, Ksenija et al. (2011) GPM6B regulates osteoblast function and induction of mineralization by controlling cytoskeleton and matrix vesicle release.; J Bone Miner Res, 26: 2045-51 |
|
GSE26004 |
| Draganova, Kalina et al. (2015) Wnt/?-catenin signaling regulates sequential fate decisions of murine cortical precursor cells.; Stem Cells, 33: 170-82 |
|
GSE70134 |
| Dragoni, Francesca et al. (2025) Whole transcriptome analysis of unmutated sporadic ALS patients' peripheral blood reveals phenotype-specific gene expression signature.; Neurobiol Dis, 206: 106823 |
|
GSE288704 |
| Drake, Jennifer I et al. (2013) Chronic carvedilol treatment partially reverses the right ventricular failure transcriptional profile in experimental pulmonary hypertension.; Physiol Genomics, 45: 449-61 |
|
GSE42579 |
| Drake, Wonder P et al. (2013) Oral antimycobacterial therapy in chronic cutaneous sarcoidosis: a randomized, single-masked, placebo-controlled study.; JAMA Dermatol, 149: 1040-9 |
|
GSE39606 |
| Draper, Julia E et al. (2016) RUNX1B Expression Is Highly Heterogeneous and Distinguishes Megakaryocytic and Erythroid Lineage Fate in Adult Mouse Hematopoiesis.; PLoS Genet, 12: e1005814 |
|
GSE68958 |
| Drayton, Ross M et al. (2014) MicroRNA-99a and 100 mediated upregulation of FOXA1 in bladder cancer.; Oncotarget, 5: 6375-86 |
|
GSE56037 |
| Dreser, Nadine et al. (2020) Development of a neural rosette formation assay (RoFA) to identify neurodevelopmental toxicants and to characterize their transcriptome disturbances.; Arch Toxicol, 94: 151-171 |
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GSE141253 |
| Dressman, Holly K et al. (2006) Gene expression profiles of multiple breast cancer phenotypes and response to neoadjuvant chemotherapy.; Clin Cancer Res, 12: 819-26 |
|
GSE52322 |
| Drewniak, Agata et al. (2009) Changes in gene expression of granulocytes during in vivo granulocyte colony-stimulating factor/dexamethasone mobilization for transfusion purposes.; Blood, 113: 5979-98 |
|
GSE12841 |
| Drews, Katharina et al. (2012) The cytotoxic and immunogenic hurdles associated with non-viral mRNA-mediated reprogramming of human fibroblasts.; Biomaterials, 33: 4059-68 |
|
GSE34943 |
| Driessen, Terri M et al. (2018) Molecular pathway analysis towards understanding tissue vulnerability in spinocerebellar ataxia type 1.; Elife, 7: [no pages] |
|
GSE122099 |
| Driss, Laura Ben et al. (2021) LRRFIP2 modulates the response to hypoxia during embryonic cardiogenesis; bioRxiv, [no vol.]: [no pages] |
|
GSE205239 |
| Drissen, Roy et al. (2016) Distinct myeloid progenitor-differentiation pathways identified through single-cell RNA sequencing.; Nat Immunol, 17: 666-76 |
|
GSE49241 |
| Drobysheva, Daria et al. (2015) Transformation of enriched mammary cell populations with polyomavirus middle T antigen influences tumor subtype and metastatic potential.; Breast Cancer Res, 17: 132 |
|
GSE64453 |
| Dror, Erez et al. (2023) Epigenetic dosage identifies two major and functionally distinct β cell subtypes.; Cell Metab, 35: 821-836.e7 |
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GSE224059 |
| Drosatos, Konstantinos et al. (2007) A dominant negative form of the transcription factor c-Jun affects genes that have opposing effects on lipid homeostasis in mice.; J Biol Chem, [no vol.]: [no pages] |
|
GSE6850 |
| Drouin-Ouellet, Janelle et al. (2017) REST suppression mediates neural conversion of adult human fibroblasts via microRNA-dependent and -independent pathways.; EMBO Mol Med, 9: 1117-1131 |
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GSE90068 |
| Drouin-Ouellet, Janelle et al. (2022) Age-related pathological impairments in directly reprogrammed dopaminergic neurons derived from patients with idiopathic Parkinson's disease.; Stem Cell Reports, 17: 2203-2219 |
|
GSE125239 |
| Drumm, Michael R et al. (2023) Postoperative risk of IDH-mutant glioma-associated seizures and their potential management with IDH-mutant inhibitors.; J Clin Invest, 133: [no pages] |
|
GSE227995 |
| Drägert, Katja et al. (2015) Deletion of Rictor in brain and fat alters peripheral clock gene expression and increases blood pressure.; Hypertension, 66: 332-9 |
|
GSE67077 |
| du Manoir, Stanislas et al. (2022) In high-grade ovarian carcinoma, platinum-sensitive tumor recurrence and acquired-resistance derive from quiescent residual cancer cells that overexpress CRYAB, CEACAM6, and SOX2.; J Pathol, 257: 367-378 |
|
GSE198701 |
| Du, Heng et al. (2022) Transcription factors Bcl11a and Bcl11b are required for the production and differentiation of cortical projection neurons.; Cereb Cortex, 32: 3611-3632 |
|
GSE182990 |
| Du, Jiahui et al. (2023) BRD9-mediated chromatin remodeling suppresses osteoclastogenesis through negative feedback mechanism.; Nat Commun, 14: 1413 |
|
GSE222239 |
| Du, Junwei et al. (2025) Chronic Oxaliplatin Treatment Induces CIPN in Mice via Activation of the TXNIP Pathway.; Mol Neurobiol, 63: 92 |
|
GSE286387 |
| Du, Kunzhao et al. (2021) Distinct roles of Fto and Mettl3 in controlling development of the cerebral cortex through transcriptional and translational regulations.; Cell Death Dis, 12: 700 |
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GSE154992 |
| Du, Mei et al. (2016) Retinal gene expression responses to aging are sexually divergent.; Mol Vis, 23: 707-717 |
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GSE95220 |
| Du, Ngoc-Hien et al. (2014) MicroRNAs shape circadian hepatic gene expression on a transcriptome-wide scale.; Elife, 3: e02510 |
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GSE57313 |
| Du, Qiumei et al. (2019) MIR205HG Is a Long Noncoding RNA that Regulates Growth Hormone and Prolactin Production in the Anterior Pituitary.; Dev Cell, 49: 618-631.e5 |
|
GSE126943 |
| Du, Shibin et al. (2022) A nerve injury-specific long noncoding RNA promotes neuropathic pain by increasing Ccl2 expression.; J Clin Invest, 132: [no pages] |
|
GSE206043 |
| Du, Siling et al. (2026) Brain-engrafted monocyte-derived macrophages from blood and skull-bone marrow exhibit distinct properties.; Neuron, [no vol.]: [no pages] |
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GSE313388.1 GSE313388.2 |
| Du, Wan-Jie et al. (2024) Ash1L ameliorates psoriasis via limiting neuronal activity-dependent release of miR-let-7b.; Br J Pharmacol, 181: 1107-1127 |
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GSE215333 |
| Du, Wei et al. (2016) Age-associated vascular inflammation promotes monocytosis during atherogenesis.; Aging Cell, 15: 766-77 |
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GSE69187 |
| Du, Wen et al. (2022) Pharmacological conversion of gut epithelial cells into insulin-producing cells lowers glycemia in diabetic animals.; J Clin Invest, 132: [no pages] |
|
GSE201832 GSE213445 |
| Du, Wenxin et al. (2026) Palmitic acid activates c-Myc via dual palmitoylation-dependent pathways to promote colon cancer.; Cell Discov, 12: 12 |
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GSE299569.2 GSE299569.1 |
| Du, Xiangnan et al. (2012) FGFR3 stimulates stearoyl CoA desaturase 1 activity to promote bladder tumor growth.; Cancer Res, 72: 5843-55 |
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GSE41035 |
| Du, Xiaofei et al. (2019) α1ACT Is Essential for Survival and Early Cerebellar Programming in a Critical Neonatal Window.; Neuron, 102: 770-785.e7 |
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GSE126089 |
| Du, Xinli et al. (2006) Genomic profiles for human peripheral blood T cells, B cells, natural killer cells, monocytes, and polymorphonuclear cells: comparisons to ischemic stroke, migraine, and Tourette syndrome.; Genomics, 87: 693-703 |
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GSE72642 |
| Du, Yingshi et al. (2023) NQO1 regulates expression and alternative splicing of apoptotic genes associated with Alzheimer's disease in PC12 cells.; Brain Behav, 13: e2917 |
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GSE185633 |
| Du, Zhanhui et al. (2020) Identification of Differentially Expressed Genes and Key Pathways in the Dorsal Root Ganglion After Chronic Compression.; Front Mol Neurosci, 13: 71 |
|
GSE145222 |
| Duan, Chao et al. (2024) Stanniocalcin-1 promotes temozolomide resistance of glioblastoma through regulation of MGMT.; Sci Rep, 14: 20199 |
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GSE261684 |
| Duan, Chunwen et al. (2024) Retinal organoids with X-linked retinoschisis RS1 (E72K) mutation exhibit a photoreceptor developmental delay and are rescued by gene augmentation therapy.; Stem Cell Res Ther, 15: 152 |
|
GSE267405 |
| Duan, Hongmei et al. (2015) Transcriptome analyses reveal molecular mechanisms underlying functional recovery after spinal cord injury.; Proc Natl Acad Sci U S A, 112: 13360-5 |
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GSE69334 |
| Duan, Jubao et al. (2013) Genome-wide survey of interindividual differences of RNA stability in human lymphoblastoid cell lines.; Sci Rep, 3: 1318 |
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GSE34204 |
| Duan, Qiming et al. (2017) BET bromodomain inhibition suppresses innate inflammatory and profibrotic transcriptional networks in heart failure.; Sci Transl Med, 9: [no pages] |
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GSE96560 GSE96561 |
| Duan, Shunlei et al. (2015) PTEN deficiency reprogrammes human neural stem cells towards a glioblastoma stem cell-like phenotype.; Nat Commun, 6: 10068 |
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GSE61794 |
| Duan, Wenzhe et al. (2023) Warburg effect enhanced by AKR1B10 promotes acquired resistance to pemetrexed in lung cancer-derived brain metastasis.; J Transl Med, 21: 547 |
|
GSE211215 |
| Duan, Zhi et al. (2025) PROX1 is an early driver of lineage plasticity in prostate cancer.; J Clin Invest, 135: [no pages] |
|
GSE277727 |
| Duarte, Rodrigo R R et al. (2019) The Psychiatric Risk Gene NT5C2 Regulates Adenosine Monophosphate-Activated Protein Kinase Signaling and Protein Translation in Human Neural Progenitor Cells.; Biol Psychiatry, 86: 120-130 |
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GSE109240 |
| Dubey, Richa et al. (2011) Small interfering RNA against transcription factor STAT6 leads to increased cholesterol synthesis in lung cancer cell lines.; PLoS One, 6: e28509 |
|
GSE25942 |
| Dubey, Sushil K et al. (2025) Deciphering age-related transcriptomic changes in the mouse retinal pigment epithelium.; Aging (Albany NY), 17: 657-684 |
|
GSE263427 |
| Dubois, Patrick C A et al. (2010) Multiple common variants for celiac disease influencing immune gene expression.; Nat Genet, 42: 295-302 |
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GSE20142 GSE20332 |
| Dubois-Pot-Schneider, Hélène et al. (2014) Inflammatory cytokines promote the retrodifferentiation of tumor-derived hepatocyte-like cells to progenitor cells.; Hepatology, 60: 2077-90 |
|
GSE52989 |
| Dubois-Pot-Schneider, Hélène et al. (2022) Transcriptional and Epigenetic Consequences of DMSO Treatment on HepaRG Cells.; Cells, 11: [no pages] |
|
GSE112123 |
| Dubos, Aline et al. (2018) A new mouse model of ARX dup24 recapitulates the patients' behavioral and fine motor alterations.; Hum Mol Genet, 27: 2138-2153 |
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GSE90036 |
| Ducassou, Stéphane et al. (2017) MYB-GATA1 fusion promotes basophilic leukaemia: involvement of interleukin-33 and nerve growth factor receptors.; J Pathol, 242: 347-357 |
|
GSE72913 |
| Ducheix, Simon et al. (2013) A systems biology approach to the hepatic role of the oxysterol receptor LXR in the regulation of lipogenesis highlights a cross-talk with PPAR?.; Biochimie, [no vol.]: [no pages] |
|
GSE38083 |
| Duchnowska, Renata et al. (2015) Predicting early brain metastases based on clinicopathological factors and gene expression analysis in advanced HER2-positive breast cancer patients.; J Neurooncol, 122: 205-16 |
|
GSE38057 |
| Duchnowska, Renata et al. (2017) Brain Metastasis Prediction by Transcriptomic Profiling in Triple-Negative Breast Cancer.; Clin Breast Cancer, 17: e65-e75 |
|
GSE76714 |
| Duchon, Arnaud et al. (2021) Multi-influential genetic interactions alter behaviour and cognition through six main biological cascades in Down syndrome mouse models.; Hum Mol Genet, 30: 771-788 |
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GSE149461 GSE149459 GSE149464 GSE149462 GSE149460 GSE149465 GSE149463 |
| Duchon, Arnaud et al. (2022) Ts66Yah, a mouse model of Down syndrome with improved construct and face validity.; Dis Model Mech, 15: [no pages] |
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GSE213500 GSE213502 |
| Duclot, Florian et al. (2015) The estrous cycle surpasses sex differences in regulating the transcriptome in the rat medial prefrontal cortex and reveals an underlying role of early growth response 1.; Genome Biol, 16: 256 |
|
GSE69765 |
| Ducreux, Julie et al. (2014) Global molecular effects of tocilizumab therapy in rheumatoid arthritis synovium.; Arthritis Rheumatol, 66: 15-23 |
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GSE45867 |
| Ducreux, Julie et al. (2016) Interferon α kinoid induces neutralizing anti-interferon α antibodies that decrease the expression of interferon-induced and B cell activation associated transcripts: analysis of extended follow-up data from the interferon α kinoid phase I/II study.; Rheumatology (Oxford), 55: 1901-5 |
|
GSE72747 |
| Duda, Katarzyna J et al. (2021) m6A RNA methylation of major satellite repeat transcripts facilitates chromatin association and RNA:DNA hybrid formation in mouse heterochromatin.; Nucleic Acids Res, 49: 5568-5587 |
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GSE156481 |
| Dudgeon, Crissy et al. (2023) Netrin-1 feedforward mechanism promotes pancreatic cancer liver metastasis via hepatic stellate cell activation, retinoid, and ELF3 signaling.; Cell Rep, 42: 113369 |
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GSE245306 |
| Dudley, Kevin J et al. (2008) Genome-wide analysis in a murine Dnmt1 knockdown model identifies epigenetically silenced genes in primary human pituitary tumors.; Mol Cancer Res, 6: 1567-74 |
|
GSE10552 |
| Dudziak, Diana et al. (2007) Differential antigen processing by dendritic cell subsets in vivo.; Science, 315: 107-11 |
|
GSE6259 |
| Duffy, Erin E et al. (2022) Developmental dynamics of RNA translation in the human brain.; Nat Neurosci, 25: 1353-1365 |
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GSE180240 |
| Duffy, Hannah B D et al. (2024) Deletion of Gba in neurons, but not microglia, causes neurodegeneration in a Gaucher mouse model.; JCI Insight, 9: [no pages] |
|
GSE247436 |
| Dufour, Annika et al. (2010) Acute myeloid leukemia with biallelic CEBPA gene mutations and normal karyotype represents a distinct genetic entity associated with a favorable clinical outcome.; J Clin Oncol, 28: 570-7 |
|
GSE15210 |
| Dufour, Damien et al. (2022) Loss of SUMO-specific protease 2 causes isolated glucocorticoid deficiency by blocking adrenal cortex zonal transdifferentiation in mice.; Nat Commun, 13: 7858 |
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GSE193480 |
| Dugaucquier, Lindsey et al. (2020) The role of endothelial autocrine NRG1/ERBB4 signaling in cardiac remodeling.; Am J Physiol Heart Circ Physiol, 319: H443-H455 |
|
GSE150619 |
| Duggan, Jeffrey M et al. (2011) Synergistic interactions of TLR2/6 and TLR9 induce a high level of resistance to lung infection in mice.; J Immunol, 186: 5916-26 |
|
GSE26864 |
| Duggan, Michael R et al. (2019) Transcriptomic changes in the prefrontal cortex of rats as a function of age and cognitive engagement.; Neurobiol Learn Mem, 163: 107035 |
|
GSE105453 |
| Duggan, Shane P et al. (2010) An integrative genomic approach in oesophageal cells identifies TRB3 as a bile acid responsive gene, downregulated in Barrett's oesophagus, which regulates NF-kappaB activation and cytokine levels.; Carcinogenesis, 31: 936-45 |
|
GSE13400 |
| Duguid, Alasdair et al. (2026) Mixed-lineage leukemia cells undergo unique adaptations in the CNS niche.; Exp Hematol, 154: 105347 |
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GSE303671.2 GSE303671.1 |