List of all 22,542 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Duijkers, Floor A M et al. (2013) Epigenetic drug combination induces genome-wide demethylation and altered gene expression in neuro-ectodermal tumor-derived cell lines.; Cell Oncol (Dordr), 36: 351-62 |
|
GSE35218 |
| Duivenvoorde, Loes P M et al. (2011) Dietary restriction of mice on a high-fat diet induces substrate efficiency and improves metabolic health.; J Mol Endocrinol, 47: 81-97 |
|
GSE27213 |
| Duke, Corey G et al. (2017) Experience-dependent epigenomic reorganization in the hippocampus.; Learn Mem, 24: 278-288 |
|
GSE95449 |
| Dulek, Daniel E et al. (2014) Allergic airway inflammation decreases lung bacterial burden following acute Klebsiella pneumoniae infection in a neutrophil- and CCL8-dependent manner.; Infect Immun, 82: 3723-39 |
|
GSE57602 |
| Dulloo, Iqbal et al. (2024) Cleavage of the pseudoprotease iRhom2 by the signal peptidase complex reveals an ER-to-nucleus signaling pathway.; Mol Cell, 84: 277-292.e9 |
|
GSE219008 |
| Dumas, Eric K et al. (2011) Anthrax lethal toxin-induced gene expression changes in mouse lung.; Toxins (Basel), 3: 1111-30 |
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GSE28554 |
| Dumeaux, Vanessa et al. (2006) Gene expression profiling of whole-blood samples from women exposed to hormone replacement therapy.; Mol Cancer Ther, 5: 868-76 |
|
GSE3492 |
| Dumitriu, Alexandra et al. (2016) Integrative analyses of proteomics and RNA transcriptomics implicate mitochondrial processes, protein folding pathways and GWAS loci in Parkinson disease.; BMC Med Genomics, 9: 5 |
|
GSE68719 |
| Dumont, Kyle D et al. (2025) Sensory-neuron-derived CGRPα controls white adipocyte differentiation and tissue plasticity.; Cell Rep, 44: 116613 |
|
GSE293584 |
| Dumur, Catherine I et al. (2010) Differential gene expression profiling of cultured neu-transformed versus spontaneously-transformed rat cholangiocytes and of corresponding cholangiocarcinomas.; Exp Mol Pathol, 89: 227-35 |
|
GSE38834 |
| Duncan, Alexander et al. (2019) Habenular TCF7L2 links nicotine addiction to diabetes.; Nature, 574: 372-377 |
|
GSE137118 |
| Duncan, F Jason et al. (2015) Broad functional correction of molecular impairments by systemic delivery of scAAVrh74-hSGSH gene delivery in MPS IIIA mice.; Mol Ther, 23: 638-47 |
|
GSE97759 |
| Duncan, Francesca E et al. (2009) The effect of blastomere biopsy on preimplantation mouse embryo development and global gene expression.; Fertil Steril, 91: 1462-5 |
|
GSE11206 |
| Duncan, Greg J et al. (2024) Remyelination protects neurons from DLK-mediated neurodegeneration.; Nat Commun, 15: 9148 |
|
GSE245362 |
| Duncan, Peter I et al. (2009) Sialic acid utilisation and synthesis in the neonatal rat revisited.; PLoS One, 4: e8241 |
|
GSE18133 |
| Duncan, Ravyn M et al. (2020) ATF3 Coordinates Antitumor Synergy between Epigenetic Drugs and Protein Disulfide Isomerase Inhibitors.; Cancer Res, 80: 3279-3291 |
|
GSE142210 |
| Dunckley, Travis et al. (2006) Gene expression correlates of neurofibrillary tangles in Alzheimer's disease.; Neurobiol Aging, 27: 1359-71 |
|
GSE4757 |
| Dundes, Carolyn E et al. (2025) Two parallel lineage-committed progenitors contribute to the developing brain.; bioRxiv, [no vol.]: [no pages] |
|
GSE286147 |
| Dunn, Amelia D et al. (2023) Molecular and long-term behavioral consequences of neonatal opioid exposure and withdrawal in mice.; Front Behav Neurosci, 17: 1202099 |
|
GSE225468 |
| Dunn, Amy R et al. (2020) Identifying Mechanisms of Normal Cognitive Aging Using a Novel Mouse Genetic Reference Panel.; Front Cell Dev Biol, 8: 562662 |
|
GSE119408 |
| Dunn, Carissa J et al. (2017) Histone Hypervariants H2A.Z.1 and H2A.Z.2 Play Independent and Context-Specific Roles in Neuronal Activity-Induced Transcription ofArc/Arg3.1and Other Immediate Early Genes.; eNeuro, 4: [no pages] |
|
GSE96886 |
| Dunn, Emily N et al. (2018) Evaluating mice lacking serum carboxylesterase as a behavioral model for nerve agent intoxication.; Toxicol Mech Methods, 28: 563-572 |
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GSE114024 |
| Dunn, L L et al. (2006) The function of melanotransferrin: a role in melanoma cell proliferation and tumorigenesis.; Carcinogenesis, 27: 2157-69 |
|
GSE4523 |
| Dunnick, June K et al. (2012) Characterization of polybrominated diphenyl ether toxicity in Wistar Han rats and use of liver microarray data for predicting disease susceptibilities.; Toxicol Pathol, 40: 93-106 |
|
GSE32156 |
| Duns, Gerben et al. (2010) Histone methyltransferase gene SETD2 is a novel tumor suppressor gene in clear cell renal cell carcinoma.; Cancer Res, 70: 4287-91 |
|
GSE20491 |
| Dunville, Keagan et al. (2022) Laminin 511 and WNT signalling sustain prolonged expansion of hiPSC-derived hippocampal progenitors.; Development, 149: [no pages] |
|
GSE199355 |
| Duong, Austin T H et al. (2019) The Clock Mechanism Influences Neurobiology and Adaptations to Heart Failure in Clock?19/?19Mice With Implications for Circadian Medicine.; Sci Rep, 9: 4994 |
|
GSE124670 |
| Duong, Phu et al. (2021) H3K27 demethylases are dispensable for activation of Polycomb-regulated injury response genes in peripheral nerve.; J Biol Chem, 297: 100852 |
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GSE178872.1 GSE178872.2 |
| Duong, Phu et al. (2023) Modulation of Schwann cell homeostasis by the BAP1 deubiquitinase.; Glia, 71: 1466-1480 |
|
GSE197149 |
| Dupas, Steven J et al. (2026) Splice isoform-perturbation coupled to single cell transcriptome profiling reveals functions of microexons in neurogenesis and autism-linked pathways.; Nat Commun, 17: 1217 |
|
GSE291608 |
| Duplaquet, Leslie et al. (2024) Mammalian SWI/SNF complex activity regulates POU2F3 and constitutes a targetable dependency in small cell lung cancer.; Cancer Cell, 42: 1352-1369.e13 |
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GSE249362 GSE249258 |
| Dupré, Nicolas et al. (2019) Hypoxia-Ischemia Induced Age-Dependent Gene Transcription Effects at Two Development Stages in the Neonate Mouse Brain.; Front Mol Neurosci, 13: 587815 |
|
GSE144456 |
| Dupré, Nicolas et al. (2024) Protein aggregates containing wild-type and mutant NOTCH3 are major drivers of arterial pathology in CADASIL.; J Clin Invest, 134: [no pages] |
|
GSE242794 |
| Dupuy, Maryne et al. (2024) Transcriptional regulation of KCNA2 coding Kv1.2 by EWS::FLI1: involvement in controlling the YAP/Hippo signalling pathway and cell proliferation.; Cell Commun Signal, 22: 602 |
|
GSE246854 |
| Duque, V J et al. (2026) Sex-specific hypothalamic PVN transcriptomic signatures of blood pressure autonomic regulation and neuroinflammation in hypertension.; Biol Sex Differ, 17: [no pages] |
|
GSE309435 |
| Duque-Afonso, Jesús et al. (2016) E2A-PBX1 Remodels Oncogenic Signaling Networks in B-cell Precursor Acute Lymphoid Leukemia.; Cancer Res, 76: 6937-6949 |
|
GSE81010 |
| Durak, Omer et al. (2016) Chd8 mediates cortical neurogenesis via transcriptional regulation of cell cycle and Wnt signaling.; Nat Neurosci, 19: 1477-1488 |
|
GSE72442 |
| Duran, Raquel Cuevas-Diaz et al. (2017) The systematic analysis of coding and long non-coding RNAs in the sub-chronic and chronic stages of spinal cord injury.; Sci Rep, 7: 41008 |
|
GSE93249 |
| Duran-Frigola, Miquel et al. (2020) Extending the small-molecule similarity principle to all levels of biology with the Chemical Checker.; Nat Biotechnol, 38: 1087-1096 |
|
GSE137202 |
| Durbin, Adam D et al. (2018) Selective gene dependencies in MYCN-amplified neuroblastoma include the core transcriptional regulatory circuitry.; Nat Genet, 50: 1240-1246 |
|
GSE108914 |
| Durgan, Joanne et al. (2015) SOS1 and Ras regulate epithelial tight junction formation in the human airway through EMP1.; EMBO Rep, 16: 87-96 |
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GSE63229 |
| Durier, Séverine et al. (2003) Physiological genomics of human arteries: quantitative relationship between gene expression and arterial stiffness.; Circulation, 108: 1845-51 |
|
GSE420 |
| Durinck, K et al. (2015) Characterization of the genome-wide TLX1 binding profile in T-cell acute lymphoblastic leukemia.; Leukemia, 29: 2317-27 |
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GSE62141 GSE62140 GSE62143 GSE62135 |
| Duroux-Richard, Isabelle et al. (2022) miRNA profile at diagnosis predicts treatment outcome in patients with B-chronic lymphocytic leukemia: A FILO study.; Front Immunol, 13: 983771 |
|
GSE214763 |
| Durrenberger, Pascal F et al. (2012) Selection of novel reference genes for use in the human central nervous system: a BrainNet Europe Study.; Acta Neuropathol, 124: 893-903 |
|
GSE26927 |
| Durán Alonso, María Beatriz et al. (2021) Meis2 Is Required for Inner Ear Formation and Proper Morphogenesis of the Cochlea.; Front Cell Dev Biol, 9: 679325 |
|
GSE149916 |
| Duréndez-Sáez, Elena et al. (2022) Analysis of Exosomal Cargo Provides Accurate Clinical, Histologic and Mutational Information in Non-Small Cell Lung Cancer.; Cancers (Basel), 14: [no pages] |
|
GSE198238 |
| Dusan, Matusica et al. (2020) Differentiation of the 50B11 dorsal ganglion cells into NGF and GDNF responsive nociceptor subtypes.; Mol Pain, 16: 1744806920970368 |
|
GSE147186 |
| Dusek, Jeffery A et al. (2008) Genomic counter-stress changes induced by the relaxation response.; PLoS One, 3: e2576 |
|
GSE10041 |
| Dutra, Sabrina G V et al. (2021) Physiological and Transcriptomic Changes in the Hypothalamic-Neurohypophysial System after 24 h of Furosemide-Induced Sodium Depletion.; Neuroendocrinology, 111: 70-86 |
|
GSE145431 |
| Dutta Banik, Debarghya et al. (2023) EGR4 is critical for cell-fate determination and phenotypic maintenance of geniculate ganglion neurons underlying sweet and umami taste.; Proc Natl Acad Sci U S A, 120: e2217595120 |
|
GSE223724 |
| Dutta, Arun B et al. (2023) Kinetic networks identify TWIST2 as a key regulatory node in adipogenesis.; Genome Res, 33: 314-331 |
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GSE219051 |
| Dutta, S et al. (2016) The target cell of transformation is distinct from the leukemia stem cell in murine CALM/AF10 leukemia models.; Leukemia, 30: 1166-76 |
|
GSE58853 |
| Dutta-Simmons, Jui et al. (2009) Aurora kinase A is a target of Wnt/beta-catenin involved in multiple myeloma disease progression.; Blood, 114: 2699-708 |
|
GSE17385 |
| Dutzmann, Jochen et al. (2021) BET bromodomain-containing epigenetic reader proteins regulate vascular smooth muscle cell proliferation and neointima formation.; Cardiovasc Res, 117: 850-862 |
|
GSE138323 |
| Duy, Phan Q et al. (2022) Impaired neurogenesis alters brain biomechanics in a neuroprogenitor-based genetic subtype of congenital hydrocephalus.; Nat Neurosci, 25: 458-473 |
|
GSE189420 |
| Dvinge, Heidi et al. (2014) Sample processing obscures cancer-specific alterations in leukemic transcriptomes.; Proc Natl Acad Sci U S A, 111: 16802-7 |
|
GSE58335 |
| Dvinge, Heidi et al. (2014) Widespread intron retention diversifies most cancer transcriptomes.; Genome Med, 7: 45 |
|
GSE52643 |
| Dvoriantchikova, Galina et al. (2015) Molecular Characterization of Notch1 Positive Progenitor Cells in the Developing Retina.; PLoS One, 10: e0131054 |
|
GSE65977 |
| Dwarkasing, J T et al. (2016) Increased hypothalamic serotonin turnover in inflammation-induced anorexia.; BMC Neurosci, 17: 26 |
|
GSE69151 |
| Dwarkasing, Jvalini T et al. (2014) Hypothalamic food intake regulation in a cancer-cachectic mouse model.; J Cachexia Sarcopenia Muscle, 5: 159-69 |
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GSE44081 GSE44082 |
| Dwarkasing, Jvalini T et al. (2015) Differences in food intake of tumour-bearing cachectic mice are associated with hypothalamic serotonin signalling.; J Cachexia Sarcopenia Muscle, 6: 84-94 |
|
GSE57190 |
| Dwivedi, Anuj Kumar et al. (2025) High-resolution multimodal profiling of human epileptic brain activity via explanted depth electrodes.; JCI Insight, 10: [no pages] |
|
GSE268714 |
| Dwivedi, Ila et al. (2023) Methadone alters transcriptional programs associated with synapse formation in human cortical organoids.; Transl Psychiatry, 13: 151 |
|
GSE210682 |
| Dwomoh, Louis et al. (2022) M1muscarinic receptor activation reduces the molecular pathology and slows the progression of prion-mediated neurodegenerative disease.; Sci Signal, 15: eabm3720 |
|
GSE202275 |
| Dwyer, Amy R et al. (2023) Glucocorticoid Receptors Drive Breast Cancer Cell Migration and Metabolic Reprogramming via PDK4.; Endocrinology, 164: [no pages] |
|
GSE221355 |
| Dyavar, Shetty Ravi et al. (2020) Transcriptomic approach predicts a major role for transforming growth factor beta type 1 pathway in L-Dopa-induced dyskinesia in parkinsonian rats.; Genes Brain Behav, 19: e12690 |
|
GSE139438 |
| Dybkær, Karen et al. (2015) Diffuse large B-cell lymphoma classification system that associates normal B-cell subset phenotypes with prognosis.; J Clin Oncol, 33: 1379-88 |
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GSE56313 GSE56314 |
| Dykes, Iain M et al. (2014) HIC2 is a novel dosage-dependent regulator of cardiac development located within the distal 22q11 deletion syndrome region.; Circ Res, 115: 23-31 |
|
GSE56430 |
| Dyrskjøt, Lars et al. (2003) Identifying distinct classes of bladder carcinoma using microarrays.; Nat Genet, 33: 90-6 |
|
GSE89 GSE88 |
| Dyrskjøt, Lars et al. (2004) Gene expression in the urinary bladder: a common carcinoma in situ gene expression signature exists disregarding histopathological classification.; Cancer Res, 64: 4040-8 |
|
GSE3167 |
| Dzik, Carlos et al. (2017) Gene expression profile of renal cell carcinomas after neoadjuvant treatment with sunitinib: new pathways revealed.; Int J Biol Markers, 32: e210-e217 |
|
GSE68629 |
| Dürig, J et al. (2007) Combined single nucleotide polymorphism-based genomic mapping and global gene expression profiling identifies novel chromosomal imbalances, mechanisms and candidate genes important in the pathogenesis of T-cell prolymphocytic leukemia with inv(14)(q11q32).; Leukemia, 21: 2153-63 |
|
GSE5788 |
| Dürig, J et al. (2011) The novel antisense Bcl-2 inhibitor SPC2996 causes rapid leukemic cell clearance and immune activation in chronic lymphocytic leukemia.; Leukemia, 25: 638-47 |
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GSE27858 |
| Düvel, Katrin et al. (2010) Activation of a metabolic gene regulatory network downstream of mTOR complex 1.; Mol Cell, 39: 171-83 |
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GSE21755 |
| Eagle, Andrew L et al. (2020) Circuit-specific hippocampal ?FosB underlies resilience to stress-induced social avoidance.; Nat Commun, 11: 4484 |
|
GSE137283 |
| Easton, Amy et al. (2022) Identification and characterization of a MAPT-targeting locked nucleic acid antisense oligonucleotide therapeutic for tauopathies.; Mol Ther Nucleic Acids, 29: 625-642 |
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GSE204930 GSE204931 |
| Easton, Zachary J W et al. (2023) An Integrated Multi-OMICS Approach Highlights Elevated Non-Esterified Fatty Acids Impact BeWo Trophoblast Metabolism and Lipid Processing.; Metabolites, 13: [no pages] |
|
GSE197385 |
| Ebeid, Michael et al. (2022) PRDM16 expression and function in mammalian cochlear development.; Dev Dyn, 251: 1666-1683 |
|
GSE193046 |
| Eberle, Dominic et al. (2011) Increased integration of transplanted CD73-positive photoreceptor precursors into adult mouse retina.; Invest Ophthalmol Vis Sci, 52: 6462-71 |
|
GSE29318 |
| Ebert, Allison D et al. (2009) Induced pluripotent stem cells from a spinal muscular atrophy patient.; Nature, 457: 277-80 |
|
GSE13828 |
| Ebert, Antje D et al. (2014) Characterization of the molecular mechanisms underlying increased ischemic damage in the aldehyde dehydrogenase 2 genetic polymorphism using a human induced pluripotent stem cell model system.; Sci Transl Med, 6: 255ra130 |
|
GSE59100 |
| Ebert, Benjamin L et al. (2008) Identification of RPS14 as a 5q- syndrome gene by RNA interference screen.; Nature, 451: 335-9 |
|
GSE9487 |
| Ebert, Blake C et al. (2025) Establishment of neuronal and glial competence of neural stem cells requires distinct enzymatic activities of TET enzymes.; Stem Cell Reports, 20: 102595 |
|
GSE287654 |
| Ebert, Scott M et al. (2010) The transcription factor ATF4 promotes skeletal myofiber atrophy during fasting.; Mol Endocrinol, 24: 790-9 |
|
GSE20101 GSE20103 |
| Ebert, Scott M et al. (2015) Identification and Small Molecule Inhibition of an Activating Transcription Factor 4 (ATF4)-dependent Pathway to Age-related Skeletal Muscle Weakness and Atrophy.; J Biol Chem, 290: 25497-511 |
|
GSE72658 |
| Ebert, Scott M et al. (2020) Activating transcription factor 4 (ATF4) promotes skeletal muscle atrophy by forming a heterodimer with the transcriptional regulator C/EBPβ.; J Biol Chem, 295: 2787-2803 |
|
GSE39193 GSE39194 |
| Ebina-Shibuya, Risa et al. (2017) Inflammatory responses induce an identity crisis of alveolar macrophages, leading to pulmonary alveolar proteinosis.; J Biol Chem, 292: 18098-18112 |
|
GSE79023 |
| Ebner, L J A et al. (2021) Transcriptomic analysis of the mouse retina after acute and chronic normobaric and hypobaric hypoxia.; Sci Rep, 11: 16666 |
|
GSE173233.1 |