List of all 22,542 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Elbaz, Benayahu et al. (2022) Sensory neurons display cell-type-specific vulnerability to loss of neuron-glia interactions.; Cell Rep, 40: 111130 |
|
GSE205461 |
| Elbaz, Benayahu et al. (2024) The bone transcription factor Osterix controls extracellular matrix- and node of Ranvier-related gene expression in oligodendrocytes.; Neuron, 112: 247-263.e6 |
|
GSE221192 |
| Elbein, Steven C et al. (2012) Genetic risk factors for type 2 diabetes: a trans-regulatory genetic architecture?; Am J Hum Genet, 91: 466-77 |
|
GSE40234 |
| Elchaninov, Andrey et al. (2024) Mimicking the cellular environment does not cause monocyte-derived macrophages to become phenotypically similar to Kupffer cells.; Immunol Cell Biol, 102: 381-395 |
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GSE236447 |
| Elcheva, Irina A et al. (2020) RNA-binding protein IGF2BP1 maintains leukemia stem cell properties by regulating HOXB4, MYB, and ALDH1A1.; Leukemia, 34: 1354-1363 |
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GSE138704 |
| Elcheva, Irina et al. (2014) Direct induction of haematoendothelial programs in human pluripotent stem cells by transcriptional regulators.; Nat Commun, 5: 4372 |
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GSE57395 |
| Eldfors, Samuli et al. (2025) Sensitivity to ATR-CHK1 pathway inhibition in AML/MDS is enhanced bySRSF2mutations and reduced by RUNX1 loss.; bioRxiv, [no vol.]: [no pages] |
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GSE213002 |
| Eldred, Kiara C et al. (2018) Thyroid hormone signaling specifies cone subtypes in human retinal organoids.; Science, 362: [no pages] |
|
GSE119320 |
| Eldredge, Laurie C et al. (2008) Abnormal sympathetic nervous system development and physiological dysautonomia in Egr3-deficient mice.; Development, 135: 2949-57 |
|
GSE2864 |
| Eldridge, Cara B et al. (2020) A p53-Dependent Checkpoint Induced upon DNA Damage Alters Cell Fate during hiPSC Differentiation.; Stem Cell Reports, 15: 827-835 |
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GSE146225 |
| Elfar, Gamal Ahmed et al. (2024) p53-dependent crosstalk between DNA replication integrity and redox metabolism mediated through a NRF2-PARP1 axis.; Nucleic Acids Res, 52: 12351-12377 |
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GSE207647 |
| Elgosbi, Marwa et al. (2024) Hypothermic oxygenated machine perfusion influences the immunogenicity of donor livers in humans.; Liver Transpl, [no vol.]: [no pages] |
|
GSE276531 |
| Elhassan, Yasir S et al. (2019) Nicotinamide Riboside Augments the Aged Human Skeletal Muscle NAD+Metabolome and Induces Transcriptomic and Anti-inflammatory Signatures.; Cell Rep, 28: 1717-1728.e6 |
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GSE133261 |
| Elitt, Matthew S et al. (2018) Chemical Screening Identifies Enhancers of Mutant Oligodendrocyte Survival and Unmasks a Distinct Pathological Phase in Pelizaeus-Merzbacher Disease.; Stem Cell Reports, 11: 711-726 |
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GSE111595 |
| Elizalde, María et al. (2014) Splicing regulator SLU7 is essential for maintaining liver homeostasis.; J Clin Invest, 124: 2909-20 |
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GSE54090 |
| Elkabetz, Yechiel et al. (2008) Human ES cell-derived neural rosettes reveal a functionally distinct early neural stem cell stage.; Genes Dev, 22: 152-65 |
|
GSE9921 |
| Elkahloun, Abdel G et al. (2016) An integrative genome-wide transcriptome reveals that candesartan is neuroprotective and a candidate therapeutic for Alzheimer's disease.; Alzheimers Res Ther, 8: 5 |
|
GSE67036 |
| Elkahloun, Abdel G et al. (2019) Telmisartan Protects a Microglia Cell Line from LPS Injury Beyond AT1 Receptor Blockade or PPAR? Activation.; Mol Neurobiol, 56: 3193-3210 |
|
GSE108671 |
| Elkjaer, Maria L et al. (2019) Molecular signature of different lesion types in the brain white matter of patients with progressive multiple sclerosis.; Acta Neuropathol Commun, 7: 205 |
|
GSE138614 |
| Elkon, Ran et al. (2005) Dissection of a DNA-damage-induced transcriptional network using a combination of microarrays, RNA interference and computational promoter analysis.; Genome Biol, 6: R43 |
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GSE1676 |
| Elkon, Ran et al. (2012) E2F mediates enhanced alternative polyadenylation in proliferation.; Genome Biol, 13: R59 |
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GSE33592 |
| Ellenberger, David T et al. (2025) Disruption of the Placenta-Brain Axis in Transgenic Mice Lacking Serotonin Transporter (SERT) in Trophoblast Cells.; Int J Mol Sci, 27: [no pages] |
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GSE304347 |
| Elliott, Kelsey H et al. (2023) Identification of a heterogeneous and dynamic ciliome during embryonic development and cell differentiation.; Development, 150: [no pages] |
|
GSE147522 |
| Ellis, Matthew J et al. (2011) Randomized phase II neoadjuvant comparison between letrozole, anastrozole, and exemestane for postmenopausal women with estrogen receptor-rich stage 2 to 3 breast cancer: clinical and biomarker outcomes and predictive value of the baseline PAM50-based intrinsic subtype--ACOSOG Z1031.; J Clin Oncol, 29: 2342-9 |
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GSE26082 |
| Ellis, Matthew J et al. (2012) Whole-genome analysis informs breast cancer response to aromatase inhibition.; Nature, 486: 353-60 |
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GSE29442 |
| Ellis, Matthew J et al. (2017) Ki67 Proliferation Index as a Tool for Chemotherapy Decisions During and After Neoadjuvant Aromatase Inhibitor Treatment of Breast Cancer: Results From the American College of Surgeons Oncology Group Z1031 Trial (Alliance).; J Clin Oncol, 35: 1061-1069 |
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GSE87411.2 |
| Ellis, Randall J et al. (2025) Machine Learning Analysis of the Orbitofrontal Cortex Transcriptome of Human Opioid Users Identifies Shisa7 as a Translational Target Relevant for Heroin Seeking Leveraging a Male Rat Model.; Biol Psychiatry, 98: 23-33 |
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GSE280431.2 |
| Ellsworth, Darrell L et al. (2014) Intensive cardiovascular risk reduction induces sustainable changes in expression of genes and pathways important to vascular function.; Circ Cardiovasc Genet, 7: 151-60 |
|
GSE46097 |
| Elmore, Monica R P et al. (2018) Replacement of microglia in the aged brain reverses cognitive, synaptic, and neuronal deficits in mice.; Aging Cell, 17: e12832 |
|
GSE94042 |
| Elmén, Joacim et al. (2008) Antagonism of microRNA-122 in mice by systemically administered LNA-antimiR leads to up-regulation of a large set of predicted target mRNAs in the liver.; Nucleic Acids Res, 36: 1153-62 |
|
GSE13948 |
| Elo, Laura L et al. (2010) Genome-wide profiling of interleukin-4 and STAT6 transcription factor regulation of human Th2 cell programming.; Immunity, 32: 852-62 |
|
GSE17851 |
| Elsamad, Ghadir et al. (2023) Ageing restructures the transcriptome of the hypothalamic supraoptic nucleus and alters the response to dehydration.; NPJ Aging, 9: 12 |
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GSE214353 |
| Elsen, Gina E et al. (2013) The protomap is propagated to cortical plate neurons through an Eomes-dependent intermediate map.; Proc Natl Acad Sci U S A, 110: 4081-6 |
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GSE43387 |
| Elsen, Gina E et al. (2018) The Epigenetic Factor Landscape of Developing Neocortex Is Regulated by Transcription Factors Pax6? Tbr2? Tbr1.; Front Neurosci, 12: 571 |
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GSE115703 |
| Elser, Benjamin A et al. (2020) Combined maternal exposure to cypermethrin and stress affect embryonic brain and placental outcomes in mice.; Toxicol Sci, [no vol.]: [no pages] |
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GSE144511 |
| Elsesser, Olga et al. (2019) Chromatin remodeler Ep400 ensures oligodendrocyte survival and is required for myelination in the vertebrate central nervous system.; Nucleic Acids Res, 47: 6208-6224 |
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GSE119127 |
| Elsässer, Simon J et al. (2016) Genetic code expansion in stable cell lines enables encoded chromatin modification.; Nat Methods, 13: 158-64 |
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GSE73823 |
| ElTanbouly, Mohamed A et al. (2024) Role of affinity in plasma cell development in the germinal center light zone.; J Exp Med, 221: [no pages] |
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GSE246382 |
| Elvidge, Gareth P et al. (2006) Concordant regulation of gene expression by hypoxia and 2-oxoglutarate-dependent dioxygenase inhibition: the role of HIF-1alpha, HIF-2alpha, and other pathways.; J Biol Chem, 281: 15215-26 |
|
GSE3188 |
| Elzinga, Sarah E et al. (2023) Transcriptomic analysis of diabetic kidney disease and neuropathy in mouse models of type 1 and type 2 diabetes.; Dis Model Mech, 16: [no pages] |
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GSE222776 |
| Ema, Akira et al. (2015) Identification of EGFR expression status association with metastatic lymph node density (ND) by expression microarray analysis of advanced gastric cancer.; Cancer Med, 4: 90-100 |
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GSE51725 |
| Emadali, Anouk et al. (2013) Identification of a novel BET bromodomain inhibitor-sensitive, gene regulatory circuit that controls Rituximab response and tumour growth in aggressive lymphoid cancers.; EMBO Mol Med, 5: 1180-95 |
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GSE46873 |
| Emechebe, Uchenna et al. (2021) Age-dependent transcriptional alterations in cardiac endothelial cells.; Physiol Genomics, 53: 295-308 |
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GSE163821 |
| Emerson, Jacen et al. (2024) Early transcriptomic perturbations highlight the spinal cord as a key pathogenic region in spinocerebellar ataxia type 3.; Front Cell Neurosci, 19: 1735225 |
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GSE309535 GSE309549 GSE309548 |
| Emery, Ben et al. (2009) Myelin gene regulatory factor is a critical transcriptional regulator required for CNS myelination.; Cell, 138: 172-85 |
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GSE15303 |
| Emery, Lyndsey A et al. (2009) Early dysregulation of cell adhesion and extracellular matrix pathways in breast cancer progression.; Am J Pathol, 175: 1292-302 |
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GSE16873 |
| Emery, Martine et al. (2016) Biological Characterization of Gene Response to Insulin-Induced Hypoglycemia in Mouse Retina.; PLoS One, 11: e0150266 |
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GSE67523 |
| Emisoglu-Kulahli, Handan et al. (2020) Transcriptome analysis of the circadian clock gene BMAL1 deletion with opposite carcinogenic effects.; Funct Integr Genomics, [no vol.]: [no pages] |
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GSE157069 |
| Emmons, Michael F et al. (2023) HDAC8-mediated inhibition of EP300 drives a transcriptional state that increases melanoma brain metastasis.; Nat Commun, 14: 7759 |
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GSE218625 |
| Emri, Eszter et al. (2020) A Multi-Omics Approach Identifies Key Regulatory Pathways Induced by Long-Term Zinc Supplementation in Human Primary Retinal Pigment Epithelium.; Nutrients, 12: [no pages] |
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GSE156452 |
| Enam, Syed Faaiz et al. (2020) Evaluation of M2-like macrophage enrichment after diffuse traumatic brain injury through transient interleukin-4 expression from engineered mesenchymal stromal cells.; J Neuroinflammation, 17: 197 |
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GSE144193 |
| Enamorado, Michel et al. (2023) Immunity to the microbiota promotes sensory neuron regeneration.; Cell, 186: 607-620.e17 |
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GSE196994.2 GSE196994.1 |
| Enard, Wolfgang et al. (2009) A humanized version of Foxp2 affects cortico-basal ganglia circuits in mice.; Cell, 137: 961-71 |
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GSE13588 |
| Enders, Lennart et al. (2023) Pharmacological perturbation of the phase-separating protein SMNDC1.; Nat Commun, 14: 4504 |
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GSE231600 |
| Enders, Michael et al. (2023) Impact of the Voltage-Gated Calcium Channel Antagonist Nimodipine on the Development of Oligodendrocyte Precursor Cells.; Int J Mol Sci, 24: [no pages] |
|
GSE221939 |
| Endo, Fumito et al. (2022) Molecular basis of astrocyte diversity and morphology across the CNS in health and disease.; Science, 378: eadc9020 |
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GSE198027.3 |
| Endo, Shinya et al. (2024) Decreased PU.1 expression in mature B cells induces lymphomagenesis.; Cancer Sci, 115: 3890-3901 |
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GSE117631 |
| Endo, Takeshi et al. (2022) Mature but not developing Schwann cells promote axon regeneration after peripheral nerve injury.; NPJ Regen Med, 7: 12 |
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GSE188399 |
| Endo, Yuki et al. (2025) Synthetic lethality of EZH2 and DNMT Inhibition suppresses neuroblastoma proliferation via MYCN destabilization.; BMC Cancer, 25: 1759 |
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GSE143712 |
| Endo-Munoz, L et al. (2010) Osteosarcoma is characterised by reduced expression of markers of osteoclastogenesis and antigen presentation compared with normal bone.; Br J Cancer, 103: 73-81 |
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GSE19276 |
| Endo-Munoz, Liliana et al. (2015) Progression of Osteosarcoma from a Non-Metastatic to a Metastatic Phenotype Is Causally Associated with Activation of an Autocrine and Paracrine uPA Axis.; PLoS One, 10: e0133592 |
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GSE49003 |
| Endoh, Mitsuhiro et al. (2008) Polycomb group proteins Ring1A/B are functionally linked to the core transcriptional regulatory circuitry to maintain ES cell identity.; Development, 135: 1513-24 |
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GSE10476 |
| Endres, Theresa et al. (2021) Ubiquitylation of MYC couples transcription elongation with double-strand break repair at active promoters.; Mol Cell, 81: 830-844.e13 |
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GSE150203 |
| Eng, S Raisa et al. (2004) Coordinated regulation of gene expression by Brn3a in developing sensory ganglia.; Development, 131: 3859-70 |
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GSE3895 |
| Eng, S Raisa et al. (2007) POU-domain factor Brn3a regulates both distinct and common programs of gene expression in the spinal and trigeminal sensory ganglia.; Neural Dev, 2: 3 |
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GSE5658 |
| Engal, Eden et al. (2024) DNMT3B splicing dysregulation mediated by SMCHD1 loss contributes to DUX4 overexpression and FSHD pathogenesis.; Sci Adv, 10: eadn7732 |
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GSE223039 |
| Engel, Daiane F et al. (2019) Impaired adult hippocampal neurogenesis in a mouse model of familial hypercholesterolemia: A role for the LDL receptor and cholesterol metabolism in adult neural precursor cells.; Mol Metab, 30: 1-15 |
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GSE136792 GSE136797 |
| Engel, Mareen et al. (2018) The Role of m6A/m-RNA Methylation in Stress Response Regulation.; Neuron, 99: 389-403.e9 |
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GSE113796 GSE113781 GSE113801.2 GSE113793 |
| Engelhardt, David et al. (2025) Moderate levels of folic acid benefit outcomes for cilia based neural tube defects.; Dev Biol, 520: 62-74 |
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GSE137177 |
| Engeln, Michel et al. (2021) Individual differences in stereotypy and neuron subtype translatome with TrkB deletion.; Mol Psychiatry, 26: 1846-1859 |
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GSE146274 |
| Engeln, Michel et al. (2022) Transcriptome profiling of the ventral pallidum reveals a role for pallido-thalamic neurons in cocaine reward.; Mol Psychiatry, [no vol.]: [no pages] |
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GSE199725 |
| Engler, Jane R et al. (2012) Increased microglia/macrophage gene expression in a subset of adult and pediatric astrocytomas.; PLoS One, 7: e43339 |
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GSE38330.2 GSE38330.1 |
| English, Sangeeta B et al. (2009) Use of Bayesian networks to probabilistically model and improve the likelihood of validation of microarray findings by RT-PCR.; J Biomed Inform, 42: 287-95 |
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GSE1816 |
| Engstrom, Amanda K et al. (2020) The inhibition of LSD1 via sequestration contributes to tau-mediated neurodegeneration.; Proc Natl Acad Sci U S A, 117: 29133-29143 |
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GSE160151 |
| Engstrom, Lars D et al. (2023) MRTX1719 Is an MTA-Cooperative PRMT5 Inhibitor That Exhibits Synthetic Lethality in Preclinical Models and Patients with MTAP-Deleted Cancer.; Cancer Discov, 13: 2412-2431 |
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GSE240145 |
| Enis, David R et al. (2008) Antiapoptotic activities of bcl-2 correlate with vascular maturation and transcriptional modulation of human endothelial cells.; Endothelium, 15: 59-71 |
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GSE10710 |
| Enjuanes, Anna et al. (2011) Identification of methylated genes associated with aggressive clinicopathological features in mantle cell lymphoma.; PLoS One, 6: e19736 |
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GSE22038 |
| Ennerfelt, Hannah et al. (2022) SYK coordinates neuroprotective microglial responses in neurodegenerative disease.; Cell, 185: 4135-4152.e22 |
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GSE212277 |
| Ennerfelt, Hannah et al. (2023) CARD9 attenuates Aβ pathology and modifies microglial responses in an Alzheimer's disease mouse model.; Proc Natl Acad Sci U S A, 120: e2303760120 |
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GSE232636 |
| Enomoto, Hirayuki et al. (2017) The in vivo antitumor effects of type I-interferon against hepatocellular carcinoma: the suppression of tumor cell growth and angiogenesis.; Sci Rep, 7: 12189 |
|
GSE102863 |
| Enriquez, Claudia et al. (2021) Castration-Induced Downregulation of SPARC in Stromal Cells Drives Neuroendocrine Differentiation of Prostate Cancer.; Cancer Res, 81: 4257-4274 |
|
GSE156033 |
| Enriquez-Gasca, Rocio et al. (2023) Co-option of endogenous retroviruses through genetic escape from TRIM28 repression.; Cell Rep, 42: 112625 |
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GSE207184 |
| Enterría-Morales, Daniel et al. (2020) Molecular targets for endogenous glial cell line-derived neurotrophic factor modulation in striatal parvalbumin interneurons.; Brain Commun, 2: fcaa105 |
|
GSE100300 |
| Enuka, Yehoshua et al. (2017) Epigenetic mechanisms underlie the crosstalk between growth factors and a steroid hormone.; Nucleic Acids Res, 45: 12681-12699 |
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GSE94374 |
| Enz, Lukas Simon et al. (2020) Increased HLA-DR expression and cortical demyelination in MS links with HLA-DR15.; Neurol Neuroimmunol Neuroinflamm, 7: [no pages] |
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GSE131281 GSE131279 |
| Eom, Tae-Yeon et al. (2024) Tbx1 haploinsufficiency leads to local skull deformity, paraflocculus and flocculus dysplasia, and motor-learning deficit in 22q11.2 deletion syndrome.; Nat Commun, 15: 10510 |
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GSE254044.2 GSE254044.1 |
| Er, Ekrem Emrah et al. (2018) Pericyte-like spreading by disseminated cancer cells activates YAP and MRTF for metastatic colonization.; Nat Cell Biol, 20: 966-978 |
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GSE82281 |
| Erales, Jenny et al. (2017) Evidence for rRNA 2'-O-methylation plasticity: Control of intrinsic translational capabilities of human ribosomes.; Proc Natl Acad Sci U S A, 114: 12934-12939 |
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GSE105248 |
| Erdely, Aaron et al. (2012) Type I interferon and pattern recognition receptor signaling following particulate matter inhalation.; Part Fibre Toxicol, 9: 25 |
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GSE34056 |
| Erdem, Neslihan et al. (2026) Human pancreatic ductal cells from non-diabetic donors function as non-professional antigen-presenting cells upon inflammatory cytokine exposure.; Diabetologia, 69: 2323-2337 |
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GSE309294 |