List of all 22,539 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Farsi, Zohreh et al. (2026) Aberrant mRNA splicing and impaired hippocampal neurogenesis inGrin2bmutant mice.; iScience, 29: 114700 |
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GSE306925.2 GSE312325 |
| Fasan, Annette et al. (2013) Frequency and prognostic impact of CEBPA proximal, distal and core promoter methylation in normal karyotype AML: a study on 623 cases.; PLoS One, 8: e54365 |
|
GSE34733 |
| Fasano, Christopher A et al. (2010) Efficient derivation of functional floor plate tissue from human embryonic stem cells.; Cell Stem Cell, 6: 336-47 |
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GSE20573 |
| Fasching, Liana et al. (2015) TRIM28 represses transcription of endogenous retroviruses in neural progenitor cells.; Cell Rep, 10: 20-8 |
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GSE45930 |
| Fasulo, Luisa et al. (2017) ProNGF Drives Localized and Cell Selective Parvalbumin Interneuron and Perineuronal Net Depletion in the Dentate Gyrus of Transgenic Mice.; Front Mol Neurosci, 10: 20 |
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GSE70757 |
| Fatemi, S Hossein et al. (2006) Chronic olanzapine treatment causes differential expression of genes in frontal cortex of rats as revealed by DNA microarray technique.; Neuropsychopharmacology, 31: 1888-99 |
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GSE2547 |
| Fathi, Ali et al. (2011) Comprehensive gene expression analysis of human embryonic stem cells during differentiation into neural cells.; PLoS One, 6: e22856 |
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GSE28633 |
| Fathi, Ali et al. (2022) Chemically induced senescence in human stem cell-derived neurons promotes phenotypic presentation of neurodegeneration.; Aging Cell, 21: e13541 |
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GSE141028 |
| Fatima, Azra et al. (2020) The ubiquitin-conjugating enzyme UBE2K determines neurogenic potential through histone H3 in human embryonic stem cells.; Commun Biol, 3: 262 |
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GSE146701 |
| Fattahi, Faranak et al. (2016) Deriving human ENS lineages for cell therapy and drug discovery in Hirschsprung disease.; Nature, 531: 105-9 |
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GSE66148.1 |
| Fattet, Sarah et al. (2009) Beta-catenin status in paediatric medulloblastomas: correlation of immunohistochemical expression with mutational status, genetic profiles, and clinical characteristics.; J Pathol, 218: 86-94 |
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GSE12992 |
| Faust, Travis E et al. (2023) A comparative analysis of microglial inducible Cre lines.; Cell Rep, 42: 113031 |
|
GSE217062 |
| Fava, Roy A et al. (2011) Lymphotoxin-beta receptor blockade reduces CXCL13 in lacrimal glands and improves corneal integrity in the NOD model of Sjögren's syndrome.; Arthritis Res Ther, 13: R182 |
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GSE32681 |
| Favila, Michelle A et al. (2014) Human dendritic cells exhibit a pronounced type I IFN signature following Leishmania major infection that is required for IL-12 induction.; J Immunol, 192: 5863-72 |
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GSE42088 |
| Favuzzi, Emilia et al. (2019) Distinct molecular programs regulate synapse specificity in cortical inhibitory circuits.; Science, 363: 413-417 |
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GSE120161 |
| Favuzzi, Emilia et al. (2021) GABA-receptive microglia selectively sculpt developing inhibitory circuits.; Cell, 184: 4048-4063.e32 |
|
GSE159947 |
| Fawal, Mohamad-Ali et al. (2018) Cross Talk between One-Carbon Metabolism, Eph Signaling, and Histone Methylation Promotes Neural Stem Cell Differentiation.; Cell Rep, 23: 2864-2873.e7 |
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GSE104068 |
| Fazal, Furqan M et al. (2019) Atlas of Subcellular RNA Localization Revealed by APEX-Seq.; Cell, 178: 473-490.e26 |
|
GSE116008.2 |
| Fazazi, Mohamed Reda et al. (2024) Myelin-reactive B cells exacerbate CD4+T cell-driven CNS autoimmunity in an IL-23-dependent manner.; Nat Commun, 15: 5404 |
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GSE267422 |
| Fecher, Caroline et al. (2025) Resting Ca2+fluxes protect cells from fast mitochondrial fragmentation, cell stress responses, and immediate transcriptional reprogramming.; Cell Mol Life Sci, 82: 238 |
|
GSE242678 |
| Fedele, Pasquale L et al. (2018) IMiDs prime myeloma cells for daratumumab-mediated cytotoxicity through loss of Ikaros and Aiolos.; Blood, 132: 2166-2178 |
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GSE113031 |
| Fedele, Pasquale L et al. (2021) The transcription factor IRF4 represses proapoptotic BMF and BIM to licence multiple myeloma survival.; Leukemia, 35: 2114-2118 |
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GSE148984 |
| Fedoriw, Andrew et al. (2022) Inhibiting Type I Arginine Methyltransferase Activity Promotes T Cell-Mediated Antitumor Immune Responses.; Cancer Immunol Res, 10: 420-436 |
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GSE161908 |
| Fedorova, Veronika et al. (2023) Glioblastoma and cerebral organoids: development and analysis of an in vitro model for glioblastoma migration.; Mol Oncol, 17: 647-663 |
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GSE216626 |
| Fedulov, Alexey V et al. (2008) Pulmonary exposure to particles during pregnancy causes increased neonatal asthma susceptibility.; Am J Respir Cell Mol Biol, 38: 57-67 |
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GSE7475 |
| Feezor, Robert J et al. (2004) Temporal patterns of gene expression in murine cutaneous burn wound healing.; Physiol Genomics, 16: 341-8 |
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GSE460 |
| Fehl, Joshua et al. (2019) Control Interventions Can Impact Alveolarization and the Transcriptome in Developing Mouse Lungs.; Anat Rec (Hoboken), 302: 346-363 |
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GSE92891 |
| Fehniger, Todd A et al. (2007) Acquisition of murine NK cell cytotoxicity requires the translation of a pre-existing pool of granzyme B and perforin mRNAs.; Immunity, 26: 798-811 |
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GSE7764 |
| Fei, Aimei et al. (2021) Coordination of two enhancers drives expression of olfactory trace amine-associated receptors.; Nat Commun, 12: 3798 |
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GSE163672 GSE163660 GSE163667 GSE163671 |
| Fei, Dennis Liang et al. (2018) Impaired hematopoiesis and leukemia development in mice with a conditional knock-in allele of a mutant splicing factor geneU2af1.; Proc Natl Acad Sci U S A, 115: E10437-E10446 |
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GSE112174.1 GSE112174.2 |
| Feig, C et al. (2007) A new paradigm for profiling testicular gene expression during normal and disturbed human spermatogenesis.; Mol Hum Reprod, 13: 33-43 |
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GSE4797 |
| Feintuch, Catherine Manix et al. (2016) Activated Neutrophils Are Associated with Pediatric Cerebral Malaria Vasculopathy in Malawian Children.; mBio, 7: e01300-15 |
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GSE72058 |
| Feiten, Astrid F et al. (2026) TREM2 expression level is critical for microglial state, metabolic capacity and efficacy of TREM2 agonism.; Nat Commun, 17: [no pages] |
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GSE295016 GSE271074 |
| Fejer, György et al. (2013) Nontransformed, GM-CSF-dependent macrophage lines are a unique model to study tissue macrophage functions.; Proc Natl Acad Sci U S A, [no vol.]: [no pages] |
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GSE47473 |
| Fekete, Éva M et al. (2025) Definitive Evidence for the Identification and Function of Renin-Expressing Cholinergic Neurons in the Nucleus Ambiguus.; Hypertension, 82: 282-292 |
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GSE281444 |
| Feldcamp, L A et al. (2017) Pdxdc1 modulates prepulse inhibition of acoustic startle in the mouse.; Transl Psychiatry, 7: e1125 |
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GSE97198 |
| Feldhahn, Niklas et al. (2012) Environment-mediated drug resistance in Bcr/Abl-positive acute lymphoblastic leukemia.; Oncoimmunology, 1: 618-629 |
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GSE37286 |
| Feldman, Anna et al. (2015) The role of B cells in the early onset of the first demyelinating event of acute optic neuritis.; Invest Ophthalmol Vis Sci, 56: 1349-56 |
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GSE62584 |
| Feldser, David M et al. (2010) Stage-specific sensitivity to p53 restoration during lung cancer progression.; Nature, 468: 572-5 |
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GSE23874 GSE23873 |
| Feleke, Rahel et al. (2022) Integrative genomics reveals pathogenic mediator of valproate-induced neurodevelopmental disability.; Brain, [no vol.]: [no pages] |
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GSE198756 |
| Felfly, Hady et al. (2010) Severe Hypoxia: Consequences to Neural Stem Cells and Neurons.; J Neurol Res, 1: [no pages] |
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GSE24131 |
| Felfly, Hady et al. (2011) Identification of a neuronal gene expression signature: role of cell cycle arrest in murine neuronal differentiation in vitro.; Am J Physiol Regul Integr Comp Physiol, 301: R727-45 |
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GSE24116 |
| Felger, J C et al. (2012) Molecular signatures of peripheral blood mononuclear cells during chronic interferon-? treatment: relationship with depression and fatigue.; Psychol Med, [no vol.]: 1-13 |
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GSE31187 |
| Felker, Piritta et al. (2010) TGF-beta1 accelerates dendritic cell differentiation from common dendritic cell progenitors and directs subset specification toward conventional dendritic cells.; J Immunol, 185: 5326-35 |
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GSE22432 |
| Fell, Christopher W et al. (2022) FIBCD1 is an endocytic GAG receptor associated with a novel neurodevelopmental disorder.; EMBO Mol Med, 14: e15829 |
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GSE201289 |
| Fell, Stuart M et al. (2017) Neuroblast differentiation during development and in neuroblastoma requires KIF1Bβ-mediated transport of TRKA.; Genes Dev, 31: 1036-1053 |
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GSE90952 |
| Felt, Sébastien A et al. (2021) Detection of respiratory syncytial virus defective genomes in nasal secretions is associated with distinct clinical outcomes.; Nat Microbiol, 6: 672-681 |
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GSE166161 |
| Felthaus, Oliver et al. (2012) Transcription factors TP53 and SP1 and the osteogenic differentiation of dental stem cells.; Differentiation, 83: 10-6 |
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GSE31628 |
| Fendler, Nikole L et al. (2025) Identification and characterization of a human MORC2 DNA binding region that is required for gene silencing.; Nucleic Acids Res, 53: [no pages] |
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GSE262311 |
| Feng, Bo et al. (2009) Reprogramming of fibroblasts into induced pluripotent stem cells with orphan nuclear receptor Esrrb.; Nat Cell Biol, 11: 197-203 |
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GSE13211 GSE13190 |
| Feng, Chunlai et al. (2009) GEM-TREND: a web tool for gene expression data mining toward relevant network discovery.; BMC Genomics, 10: 411 |
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GSE5337 |
| Feng, Dandan et al. (2024) CARM1 drives triple-negative breast cancer progression by coordinating with HIF1A.; Protein Cell, [no vol.]: [no pages] |
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GSE167394 |
| Feng, Jian et al. (2014) Chronic cocaine-regulated epigenomic changes in mouse nucleus accumbens.; Genome Biol, 15: R65 |
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GSE42805 |
| Feng, Jian et al. (2015) Role of Tet1 and 5-hydroxymethylcytosine in cocaine action.; Nat Neurosci, 18: 536-44 |
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GSE63748 |
| Feng, Jian et al. (2017) Tet1 in Nucleus Accumbens Opposes Depression- and Anxiety-Like Behaviors.; Neuropsychopharmacology, 42: 1657-1669 |
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GSE76977 |
| Feng, Jianxun et al. (2011) IFN regulatory factor 8 restricts the size of the marginal zone and follicular B cell pools.; J Immunol, 186: 1458-66 |
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GSE24972 |
| Feng, Jiaqing et al. (2024) Peripheral blood transcriptomic analysis identifies potential inflammation and immune signatures for central retinal artery occlusion.; Sci Rep, 14: 7398 |
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GSE247506 |
| Feng, Lijuan et al. (2023) Altered chromatin occupancy of patient-associated H4 mutants misregulate neuronal differentiation.; bioRxiv, [no vol.]: [no pages] |
|
GSE231558 |
| Feng, Luqiu et al. (2023) Curcumin-dependent phenotypic transformation of microglia mediates resistance to pseudorabies-induced encephalitis.; Vet Res, 54: 25 |
|
GSE201985 |
| Feng, Mengdie et al. (2021) YBX1 is required for maintaining myeloid leukemia cell survival by regulating BCL2 stability in an m6A-dependent manner.; Blood, 138: 71-85 |
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GSE159152 GSE159178 |
| Feng, Shuangshuang et al. (2024) Single-cell discovery of m6A RNA modifications in the hippocampus.; Genome Res, 34: 822-836 |
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GSE240863.1.2 GSE240863.2 GSE240863.1.1 |
| Feng, Song et al. (2021) Hypergraph models of biological networks to identify genes critical to pathogenic viral response.; BMC Bioinformatics, 22: 287 |
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GSE77193 GSE78888 |
| Feng, Tingze et al. (2021) Stemness Analysis Uncovers That The Peroxisome Proliferator-Activated Receptor Signaling Pathway Can Mediate Fatty Acid Homeostasis In Sorafenib-Resistant Hepatocellular Carcinoma Cells.; Front Oncol, 12: 912694 |
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GSE143477 |
| Feng, Wei et al. (2025) ASNA1 is essential for cardiac development and function by regulating tail-anchored protein stability and vesicular transport in cardiomyocytes.; PLoS Genet, 21: e1011964 |
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GSE304685 |
| Feng, Weiguo et al. (2009) Spatial and temporal analysis of gene expression during growth and fusion of the mouse facial prominences.; PLoS One, 4: e8066 |
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GSE7759 |
| Feng, Weijun et al. (2017) Chd7 is indispensable for mammalian brain development through activation of a neuronal differentiation programme.; Nat Commun, 8: 14758 |
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GSE76975 GSE72207 |
| Feng, Xingmin et al. (2008) Rabbit ATG but not horse ATG promotes expansion of functional CD4+CD25highFOXP3+ regulatory T cells in vitro.; Blood, 111: 3675-83 |
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GSE10040 |
| Feng, Xuan et al. (2019) Interferon-β corrects massive gene dysregulation in multiple sclerosis: Short-term and long-term effects on immune regulation and neuroprotection.; EBioMedicine, 49: 269-283 |
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GSE138064 |
| Feng, Xudong et al. (2019) IL1R1 is required for celastrol's leptin-sensitization and antiobesity effects.; Nat Med, 25: 575-582 |
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GSE124353 GSE124356 GSE124355 |
| Feng, Xuesong et al. (2016) Polycomb Ezh2 controls the fate of GABAergic neurons in the embryonic cerebellum.; Development, 143: 1971-80 |
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GSE80222 |
| Feng, Yayan et al. (2024) Widespread transposable element dysregulation in human aging brains with Alzheimer's disease.; Alzheimers Dement, 20: 7495-7517 |
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GSE246052 |
| Feng, Yilin et al. (2023) Stress regulates Alzheimer's disease progression via selective enrichment of CD8+T cells.; Cell Rep, 42: 113313 |
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GSE244131 |
| Feng, Yongqiang et al. (2014) Control of the inheritance of regulatory T cell identity by a cis element in the Foxp3 locus.; Cell, 158: 749-63 |
|
GSE58905 |
| Feng, Yongqiang et al. (2015) A mechanism for expansion of regulatory T-cell repertoire and its role in self-tolerance.; Nature, 528: 132-6 |
|
GSE71309 |
| Feng, Yuqing et al. (2024) Stabilization of RRBP1 mRNA via an m6A-dependent manner in prostate cancer constitutes a therapeutic vulnerability amenable to small-peptide inhibition of METTL3.; Cell Mol Life Sci, 81: 414 |
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GSE241315 GSE240667 |
| Feng, Yuxi et al. (2011) Gene expression profiling of vasoregression in the retina--involvement of microglial cells.; PLoS One, 6: e16865 |
|
GSE20967 |
| Fennell, Emily M J et al. (2023) Multi-omics analyses reveal ClpP activators disrupt essential mitochondrial pathways in triple-negative breast cancer.; Front Pharmacol, 14: 1136317 |
|
GSE221327 |
| Fenselau, Henning et al. (2017) A rapidly acting glutamatergic ARC→PVH satiety circuit postsynaptically regulated by α-MSH.; Nat Neurosci, 20: 42-51 |
|
GSE81789 |
| Ferdigg, Andrè et al. (2025) Membrane transporters modulating the toxicity of arsenic, cadmium, and mercury in human cells.; Life Sci Alliance, 8: [no pages] |
|
GSE281225 |
| Ferdousi, Farhana et al. (2020) Microarray analysis of verbenalin-treated human amniotic epithelial cells reveals therapeutic potential for Alzheimer's Disease.; Aging (Albany NY), 12: 5516-5538 |
|
GSE137061 |
| Ferenczy, Michael W et al. (2013) Clonal immortalized human glial cell lines support varying levels of JC virus infection due to differences in cellular gene expression.; J Neuroimmune Pharmacol, 8: 1303-19 |
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GSE45639 |
| Ferenczy, Michael W et al. (2013) Differentiation of human fetal multipotential neural progenitor cells to astrocytes reveals susceptibility factors for JC virus.; J Virol, [no vol.]: [no pages] |
|
GSE43794 |
| Fergany, Alzahraa et al. (2024) Transcriptome analysis of the cerebral cortex of acrylamide-exposed wild-type and IL-1β-knockout mice.; Arch Toxicol, 98: 181-205 |
|
GSE211746 |
| Fénelon, Karine et al. (2013) The pattern of cortical dysfunction in a mouse model of a schizophrenia-related microdeletion.; J Neurosci, 33: 14825-39 |
|
GSE45935 |