List of all 22,539 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Ferguson, Chantal M et al. (2024) Silencing Apoe with divalent-siRNAs improves amyloid burden and activates immune response pathways in Alzheimer's disease.; Alzheimers Dement, 20: 2632-2652 |
|
GSE186756 |
| Ferguson, Daniel C et al. (2022) Amino acid stress response genes promote L-asparaginase resistance in pediatric acute lymphoblastic leukemia.; Blood Adv, 6: 3386-3397 |
|
GSE174498 |
| Ferguson, James et al. (2018) PRC2 Is Dispensablein Vivofor β-Catenin-Mediated Repression of Chondrogenesis in the Mouse Embryonic Cranial Mesenchyme.; G3 (Bethesda), 8: 491-503 |
|
GSE96871 |
| Ferguson, Laura B et al. (2014) PPAR agonists regulate brain gene expression: relationship to their effects on ethanol consumption.; Neuropharmacology, 86: 397-407 |
|
GSE67796 |
| Ferguson, Laura B et al. (2019) Dissecting Brain Networks Underlying Alcohol Binge Drinking Using a Systems Genomics Approach.; Mol Neurobiol, 56: 2791-2810 |
|
GSE93311 |
| Ferguson, Laura B et al. (2022) RNA biomarkers for alcohol use disorder.; Front Mol Neurosci, 15: 1032362 |
|
GSE176122 |
| Feringa, Femke M et al. (2025) The Neurolipid Atlas: a lipidomics resource for neurodegenerative diseases.; Nat Metab, 7: 2142-2164 |
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GSE302826 |
| Fernandes, Cathy et al. (2004) Hippocampal gene expression profiling across eight mouse inbred strains: towards understanding the molecular basis for behaviour.; Eur J Neurosci, 19: 2576-82 |
|
GSE5429 |
| Fernandes, Heliana B et al. (2023) Transcriptomic analysis reveals that RasGEF1b deletion alters basal and LPS-induced expression of genes involved in chemotaxis and cytokine responses in macrophages.; Sci Rep, 13: 19614 |
|
GSE190801 |
| Fernandes, Hugo J R et al. (2016) ER Stress and Autophagic Perturbations Lead to Elevated Extracellular α-Synuclein in GBA-N370S Parkinson's iPSC-Derived Dopamine Neurons.; Stem Cell Reports, 6: 342-56 |
|
GSE53426.1 |
| Fernandes, Joana et al. (2014) In vitro ischemia triggers a transcriptional response to down-regulate synaptic proteins in hippocampal neurons.; PLoS One, 9: e99958 |
|
GSE54037 |
| Fernandes, Liane P et al. (2022) A satellite DNA array barcodes chromosome 7 and regulates totipotency via ZFP819.; Sci Adv, 8: eabp8085 |
|
GSE197548 |
| Fernandes, Maria Fernanda et al. (2018) Safflower (n-6) and flaxseed (n-3) high-fat diets differentially regulate hypothalamic fatty acid profiles, gene expression, and insulin signalling.; Prostaglandins Leukot Essent Fatty Acids, 128: 67-73 |
|
GSE104338 |
| Fernandes, Milton Guilherme Forestieri et al. (2021) Age-related injury responses of human oligodendrocytes to metabolic insults: link to BCL-2 and autophagy pathways.; Commun Biol, 4: 20 |
|
GSE160811 |
| Fernandez Vallone, Valeria et al. (2020) LGR5 controls extracellular matrix production by stem cells in the developing intestine.; EMBO Rep, 21: e49224 |
|
GSE135362 |
| Fernandez, David R et al. (2009) Activation of mammalian target of rapamycin controls the loss of TCRzeta in lupus T cells through HRES-1/Rab4-regulated lysosomal degradation.; J Immunol, 182: 2063-73 |
|
GSE13887 |
| Fernandez, Diego Carlos et al. (2018) Light Affects Mood and Learning through Distinct Retina-Brain Pathways.; Cell, 175: 71-84.e18 |
|
GSE113875 |
| Fernandez, Irina et al. (2012) Gene expression profile and functionality of ESC-derived Lin-ckit+Sca-1+ cells are distinct from Lin-ckit+Sca-1+ cells isolated from fetal liver or bone marrow.; PLoS One, 7: e51944 |
|
GSE27116 |
| Fernandez, Maria-Isabel et al. (2008) Maturation of paneth cells induces the refractory state of newborn mice to Shigella infection.; J Immunol, 180: 4924-30 |
|
GSE9785 |
| Fernandez, Regina F et al. (2021) Acyl-CoA synthetase 6 is required for brain docosahexaenoic acid retention and neuroprotection during aging.; JCI Insight, 6: [no pages] |
|
GSE175571 |
| Fernandez-Albert, Jordi et al. (2019) Immediate and deferred epigenomic signatures of in vivo neuronal activation in mouse hippocampus.; Nat Neurosci, 22: 1718-1730 |
|
GSE125068 |
| Fernandez-Valdivia, Rodrigo et al. (2008) Transcriptional response of the murine mammary gland to acute progesterone exposure.; Endocrinology, 149: 6236-50 |
|
GSE10290 |
| Fernandez-Zafra, Teresa et al. (2019) Exploring the transcriptome of resident spinal microglia after collagen antibody-induced arthritis.; Pain, 160: 224-236 |
|
GSE108896 |
| Fernando, Tharu M et al. (2020) Functional characterization of SMARCA4 variants identified by targeted exome-sequencing of 131,668 cancer patients.; Nat Commun, 11: 5551 |
|
GSE144843 |
| Fernando, Thilini R et al. (2017) The lncRNA CASC15 regulates SOX4 expression in RUNX1-rearranged acute leukemia.; Mol Cancer, 16: 126 |
|
GSE101149 |
| Fernàndez, Verònica et al. (2010) Genomic and gene expression profiling defines indolent forms of mantle cell lymphoma.; Cancer Res, 70: 1408-18 |
|
GSE16455 |
| Fernàndez-Castillo, N et al. (2015) Transcriptomic and genetic studies identify NFAT5 as a candidate gene for cocaine dependence.; Transl Psychiatry, 5: e667 |
|
GSE71939 |
| Fernández, Virginia et al. (2020) Repression of Irs2 by let-7 miRNAs is essential for homeostasis of the telencephalic neuroepithelium.; EMBO J, 39: e105479 |
|
GSE151068 GSE151150 |
| Fernández-Barral, Asunción et al. (2020) Vitamin D differentially regulates colon stem cells in patient-derived normal and tumor organoids.; FEBS J, 287: 53-72 |
|
GSE100785 |
| Fernández-Beltrán, Luis C et al. (2021) A Transcriptomic Meta-Analysis Shows Lipid Metabolism Dysregulation as an Early Pathological Mechanism in the Spinal Cord of SOD1 Mice.; Int J Mol Sci, 22: [no pages] |
|
GSE184484 |
| Fernández-Castañeda, Anthony et al. (2020) The active contribution of OPCs to neuroinflammation is mediated by LRP1.; Acta Neuropathol, 139: 365-382 |
|
GSE136863 |
| Fernández-García, Fernando et al. (2024) Type I interferon signaling pathway enhances immune-checkpoint inhibition in KRAS mutant lung tumors.; Proc Natl Acad Sci U S A, 121: e2402913121 |
|
GSE274351 |
| Fernández-Medarde, A et al. (2007) Laser microdissection and microarray analysis of the hippocampus of Ras-GRF1 knockout mice reveals gene expression changes affecting signal transduction pathways related to memory and learning.; Neuroscience, 146: 272-85 |
|
GSE8425 |
| Fernández-Muñoz, Beatriz et al. (2020) Retrieval of germinal zone neural stem cells from the cerebrospinal fluid of premature infants with intraventricular hemorrhage.; Stem Cells Transl Med, 9: 1085-1101 |
|
GSE124361 |
| Fernández-Nogales, Marta et al. (2022) Multiomic Analysis of Neurons with Divergent Projection Patterns Identifies Novel Regulators of Axon Pathfinding.; Adv Sci (Weinh), [no vol.]: e2200615 |
|
GSE184275 |
| Fernández-Santiago, Rubén et al. (2015) Aberrant epigenome in iPSC-derived dopaminergic neurons from Parkinson's disease patients.; EMBO Mol Med, 7: 1529-46 |
|
GSE51922 |
| Fernández-Santiago, Rubén et al. (2021) Transcriptome analysis in LRRK2 and idiopathic Parkinson's disease at different glucose levels.; NPJ Parkinsons Dis, 7: 109 |
|
GSE167529 GSE82340 |
| Ferrai, Carmelo et al. (2017) RNA polymerase II primes Polycomb-repressed developmental genes throughout terminal neuronal differentiation.; Mol Syst Biol, 13: 946 |
|
GSE94364 |
| Ferraiuolo, Laura et al. (2007) Microarray analysis of the cellular pathways involved in the adaptation to and progression of motor neuron injury in the SOD1 G93A mouse model of familial ALS.; J Neurosci, 27: 9201-19 |
|
GSE10953 |
| Ferraiuolo, Laura et al. (2016) Oligodendrocytes contribute to motor neuron death in ALS via SOD1-dependent mechanism.; Proc Natl Acad Sci U S A, 113: E6496-E6505 |
|
GSE87385 |
| Ferrante, Linda et al. (2016) Altered gene expression and possible immunodeficiency in cases of sudden infant death syndrome.; Pediatr Res, 80: 77-84 |
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GSE70422 |
| Ferrante, Linda et al. (2021) Gene expression profile in cases of infectious death in infancy.; Pediatr Res, 89: 483-487 |
|
GSE136992 |
| Ferrara-Romeo, Iole et al. (2020) The mTOR pathway is necessary for survival of mice with short telomeres.; Nat Commun, 11: 1168 |
|
GSE127475 |
| Ferrari, Francesco et al. (2020) DOT1L-mediated murine neuronal differentiation associates with H3K79me2 accumulation and preserves SOX2-enhancer accessibility.; Nat Commun, 11: 5200 |
|
GSE135318 |
| Ferrari, Giovanni et al. (2014) Comparative genome-wide transcriptional analysis of human left and right internal mammary arteries.; Genomics, 104: 36-44 |
|
GSE41036 |
| Ferrari, M F R et al. (2010) Transcriptome analysis of nicotine-exposed cells from the brainstem of neonate spontaneously hypertensive and Wistar Kyoto rats.; Pharmacogenomics J, 10: 134-60 |
|
GSE13311 |
| Ferrari, Riccardo Rocco et al. (2024) A Map of Transcriptomic Signatures of Different Brain Areas in Alzheimer's Disease.; Int J Mol Sci, 25: [no pages] |
|
GSE280268 |
| Ferrari, Roberto et al. (2014) Adenovirus small E1A employs the lysine acetylases p300/CBP and tumor suppressor Rb to repress select host genes and promote productive virus infection.; Cell Host Microbe, 16: 663-76 |
|
GSE59688 |
| Ferrari, Roberto et al. (2020) TFIIIC Binding to Alu Elements Controls Gene Expression via Chromatin Looping and Histone Acetylation.; Mol Cell, 77: 475-487.e11 |
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GSE120162 |
| Ferreira, Ana Catarina et al. (2023) Neuronal TIMP2 regulates hippocampus-dependent plasticity and extracellular matrix complexity.; Mol Psychiatry, 28: 3943-3954 |
|
GSE223188 |
| Ferreira, Sara A et al. (2023) Sex-dimorphic neuroprotective effect of CD163 in an α-synuclein mouse model of Parkinson's disease.; NPJ Parkinsons Dis, 9: 164 |
|
GSE243536 |
| Ferreiro, Isabel et al. (2010) Whole genome analysis of p38 SAPK-mediated gene expression upon stress.; BMC Genomics, 11: 144 |
|
GSE18320 |
| Ferrer-Martínez, Andreu et al. (2006) Long-term cultured human myotubes decrease contractile gene expression and regulate apoptosis-related genes.; Gene, 384: 145-53 |
|
GSE1144 |
| Ferrer-Mayorga, Gemma et al. (2017) Vitamin D receptor expression and associated gene signature in tumour stromal fibroblasts predict clinical outcome in colorectal cancer.; Gut, 66: 1449-1462 |
|
GSE70468 |
| Ferrer-Mayorga, Gemma et al. (2019) Vitamin D and Wnt3A have additive and partially overlapping modulatory effects on gene expression and phenotype in human colon fibroblasts.; Sci Rep, 9: 8085 |
|
GSE120106 |
| Ferreyra, Gabriela A et al. (2014) Late multiple organ surge in interferon-regulated target genes characterizes staphylococcal enterotoxin B lethality.; PLoS One, 9: e88756 |
|
GSE52474 |
| Ferris, Stephen T et al. (2014) A minor subset of Batf3-dependent antigen-presenting cells in islets of Langerhans is essential for the development of autoimmune diabetes.; Immunity, 41: 657-69 |
|
GSE61847 |
| Ferriss, J Stuart et al. (2012) Multi-gene expression predictors of single drug responses to adjuvant chemotherapy in ovarian carcinoma: predicting platinum resistance.; PLoS One, 7: e30550 |
|
GSE30161 |
| Fertig, Elana J et al. (2012) Gene expression signatures modulated by epidermal growth factor receptor activation and their relationship to cetuximab resistance in head and neck squamous cell carcinoma.; BMC Genomics, 13: 160 |
|
GSE32975 |
| Fertuck, K C et al. (2003) Identification of temporal patterns of gene expression in the uteri of immature, ovariectomized mice following exposure to ethynylestradiol.; Physiol Genomics, 15: 127-41 |
|
GSE280 |
| Ferté, Charles et al. (2013) IGF-1R targeting increases the antitumor effects of DNA-damaging agents in SCLC model: an opportunity to increase the efficacy of standard therapy.; Mol Cancer Ther, 12: 1213-22 |
|
GSE45626 |
| Feuer, Kyra L et al. (2023) DPYSL2/CRMP2 isoform B knockout in human iPSC-derived glutamatergic neurons confirms its role in mTOR signaling and neurodevelopmental disorders.; Mol Psychiatry, 28: 4353-4362 |
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GSE268103 |
| Feuerer, Markus et al. (2010) Genomic definition of multiple ex vivo regulatory T cell subphenotypes.; Proc Natl Acad Sci U S A, 107: 5919-24 |
|
GSE20366 |
| Feurle, Patrick et al. (2021) SATB2-LEMD2 interaction links nuclear shape plasticity to regulation of cognition-related genes.; EMBO J, 40: e103701 |
|
GSE157375 |
| Feyeux, Maxime et al. (2012) Early transcriptional changes linked to naturally occurring Huntington's disease mutations in neural derivatives of human embryonic stem cells.; Hum Mol Genet, [no vol.]: [no pages] |
|
GSE34201 |
| Fiaschetti, G et al. (2011) Bone morphogenetic protein-7 is a MYC target with prosurvival functions in childhood medulloblastoma.; Oncogene, 30: 2823-35 |
|
GSE22139 |
| Ficara, Francesca et al. (2008) Pbx1 regulates self-renewal of long-term hematopoietic stem cells by maintaining their quiescence.; Cell Stem Cell, 2: 484-96 |
|
GSE9188 |
| Ficara, Francesca et al. (2013) Pbx1 restrains myeloid maturation while preserving lymphoid potential in hematopoietic progenitors.; J Cell Sci, 126: 3181-91 |
|
GSE30028 |
| Ficek, Joanna et al. (2016) Molecular profile of dissociative drug ketamine in relation to its rapid antidepressant action.; BMC Genomics, 17: 362 |
|
GSE73799 GSE73798 |
| Fidanza, Mario et al. (2024) Angiogenesis-associated pathways play critical roles in neonatal sepsis outcomes.; Sci Rep, 14: 11444 |
|
GSE239431 |
| Fields, Jerel Adam et al. (2022) The Cannabinoid Receptor Agonist, WIN-55212-2, Suppresses the Activation of Proinflammatory Genes Induced by Interleukin 1 Beta in Human Astrocytes.; Cannabis Cannabinoid Res, 7: 78-92 |
|
GSE160092 |
| Fietz, Simone A et al. (2012) Transcriptomes of germinal zones of human and mouse fetal neocortex suggest a role of extracellular matrix in progenitor self-renewal.; Proc Natl Acad Sci U S A, 109: 11836-41 |
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GSE38805.1 GSE38805.2 |
| Fife, Christopher et al. (2024) Natural killer cells are required for the recruitment of CD8+ T cells and the efficacy of immune checkpoint blockade in melanoma brain metastases.; J Immunother Cancer, 12: [no pages] |
|
GSE264376 |
| Figarol, Sarah et al. (2024) Farnesyltransferase inhibition overcomes oncogene-addicted non-small cell lung cancer adaptive resistance to targeted therapies.; Nat Commun, 15: 5345 |
|
GSE249721 |
| Figueira, Inês et al. (2019) Blood-brain barrier transport and neuroprotective potential of blackberry-digested polyphenols: an in vitro study.; Eur J Nutr, 58: 113-130 |
|
GSE100846 |
| Figueroa, Maria E et al. (2009) Genome-wide epigenetic analysis delineates a biologically distinct immature acute leukemia with myeloid/T-lymphoid features.; Blood, 113: 2795-804 |
|
GSE14479 |
| Figueroa, Maria E et al. (2013) Integrated genetic and epigenetic analysis of childhood acute lymphoblastic leukemia.; J Clin Invest, 123: 3099-111 |
|
GSE26281 |
| Fijneman, Remond J A et al. (2012) Runx1 is a tumor suppressor gene in the mouse gastrointestinal tract.; Cancer Sci, 103: 593-9 |
|
GSE34292 |
| Fike, Adam J et al. (2023) STAT3 signaling in B cells controls germinal center zone organization and recycling.; Cell Rep, 42: 112512 |
|
GSE212542 |
| Filarsky, Katharina et al. (2016) Krüppel-like factor 4 (KLF4) inactivation in chronic lymphocytic leukemia correlates with promoter DNA-methylation and can be reversed by inhibition of NOTCH signaling.; Haematologica, 101: e249-53 |
|
GSE66514 |
| Filbey, Kara J et al. (2019) Macrophage Migration Inhibitory Factor (MIF) Is Essential for Type 2 Effector Cell Immunity to an Intestinal Helminth Parasite.; Front Immunol, 10: 2375 |
|
GSE139008 GSE139007 |
| Filiano, Anthony J et al. (2016) Unexpected role of interferon-γ in regulating neuronal connectivity and social behaviour.; Nature, 535: 425-9 |
|
GSE81783 |
| Filipescu, Dan et al. (2023) MacroH2A restricts inflammatory gene expression in melanoma cancer-associated fibroblasts by coordinating chromatin looping.; Nat Cell Biol, 25: 1332-1345 |
|
GSE229530 |
| Filipits, Martin et al. (2011) A new molecular predictor of distant recurrence in ER-positive, HER2-negative breast cancer adds independent information to conventional clinical risk factors.; Clin Cancer Res, 17: 6012-20 |
|
GSE26971 |
| Filippou, Artemis et al. (2021) ANO1 Expression Orchestrates p27Kip1/MCL1-Mediated Signaling in Head and Neck Squamous Cell Carcinoma.; Cancers (Basel), 13: [no pages] |
|
GSE108061 GSE163639 |
| Fillon, Sophie et al. (2006) Platelet-activating factor receptor and innate immunity: uptake of gram-positive bacterial cell wall into host cells and cell-specific pathophysiology.; J Immunol, 177: 6182-91 |
|
GSE5545 |
| Filo, Shir et al. (2023) Non-invasive assessment of normal and impaired iron homeostasis in the brain.; Nat Commun, 14: 5467 |
|
GSE240204 |
| Filograna, Roberta et al. (2024) PARKIN is not required to sustain OXPHOS function in adult mammalian tissues.; NPJ Parkinsons Dis, 10: 93 |
|
GSE263057 |
| Filova, Iva et al. (2022) ISL1 is necessary for auditory neuron development and contributes toward tonotopic organization.; Proc Natl Acad Sci U S A, 119: e2207433119 |
|
GSE182575 |
| Fimiani, Cristina et al. (2024) The E3 ubiquitin ligase Nedd4 fosters developmental myelination in the mouse central and peripheral nervous system.; Glia, [no vol.]: [no pages] |
|
GSE217272 |
| Finak, Greg et al. (2006) Gene expression signatures of morphologically normal breast tissue identify basal-like tumors.; Breast Cancer Res, 8: R58 |
|
GSE4823 |
| Finak, Greg et al. (2008) Stromal gene expression predicts clinical outcome in breast cancer.; Nat Med, 14: 518-27 |
|
GSE12622 |
| Finck, Brian N et al. (2005) A potential link between muscle peroxisome proliferator- activated receptor-alpha signaling and obesity-related diabetes.; Cell Metab, 1: 133-44 |
|
GSE5777 |
| Finger, Anna-Marie et al. (2021) Intercellular coupling between peripheral circadian oscillators by TGF-β signaling.; Sci Adv, 7: [no pages] |
|
GSE158577 |