List of all 22,539 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Finis, Katharina et al. (2006) Analysis of pigmented villonodular synovitis with genome-wide complementary DNA microarray and tissue array technology reveals insight into potential novel therapeutic approaches.; Arthritis Rheum, 54: 1009-19 |
|
GSE3698 |
| Fink, Kathren L et al. (2017) Identification of Intrinsic Axon Growth Modulators for Intact CNS Neurons after Injury.; Cell Rep, 18: 2687-2701 |
|
GSE94482 |
| Finkielstain, Gabriela P et al. (2009) An extensive genetic program occurring during postnatal growth in multiple tissues.; Endocrinology, 150: 1791-800 |
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GSE38754 |
| Finlay, Liam A et al. (2012) R-?-lipoic acid does not reverse hepatic inflammation of aging, but lowers lipid anabolism, while accentuating circadian rhythm transcript profiles.; Am J Physiol Regul Integr Comp Physiol, 302: R587-97 |
|
GSE27625 |
| Finlay-Schultz, Jessica et al. (2017) Breast Cancer Suppression by Progesterone Receptors Is Mediated by Their Modulation of Estrogen Receptors and RNA Polymerase III.; Cancer Res, 77: 4934-4946 |
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GSE93944 |
| Finley, Lydia W S et al. (2011) SIRT3 opposes reprogramming of cancer cell metabolism through HIF1α destabilization.; Cancer Cell, 19: 416-28 |
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GSE27309 |
| Finley, Lydia W S et al. (2012) Skeletal muscle transcriptional coactivator PGC-1? mediates mitochondrial, but not metabolic, changes during calorie restriction.; Proc Natl Acad Sci U S A, 109: 2931-6 |
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GSE34773 |
| Finley, Lydia W S et al. (2018) Pluripotency transcription factors and Tet1/2 maintain Brd4-independent stem cell identity.; Nat Cell Biol, 20: 565-574 |
|
GSE88760 |
| Finn, Elizabeth H et al. (2014) Maternal bias and escape from X chromosome imprinting in the midgestation mouse placenta.; Dev Biol, 390: 80-92 |
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GSE42671 |
| Finn, Richard S et al. (2009) PD 0332991, a selective cyclin D kinase 4/6 inhibitor, preferentially inhibits proliferation of luminal estrogen receptor-positive human breast cancer cell lines in vitro.; Breast Cancer Res, 11: R77 |
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GSE18496 |
| Finn, Richard S et al. (2013) Molecular subtype and response to dasatinib, an Src/Abl small molecule kinase inhibitor, in hepatocellular carcinoma cell lines in vitro.; Hepatology, 57: 1838-46 |
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GSE35818 |
| Fiorcari, Stefania et al. (2020) BTK Inhibition Impairs the Innate Response Against Fungal Infection in Patients With Chronic Lymphocytic Leukemia.; Front Immunol, 11: 2158 |
|
GSE142292 |
| Fiore, Ana Paula Zen Petisco et al. (2024) Identification of molecular signatures defines the differential proteostasis response in induced spinal and cranial motor neurons.; Cell Rep, 43: 113885 |
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GSE150397 |
| Fiore, Nathan T et al. (2022) Sex-specific transcriptome of spinal microglia in neuropathic pain due to peripheral nerve injury.; Glia, 70: 675-696 |
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GSE180627 |
| Fiore, Nicholas J et al. (2022) Bioengineered models of Parkinson's disease using patient-derived dopaminergic neurons exhibit distinct biological profiles in a 3D microenvironment.; Cell Mol Life Sci, 79: 78 |
|
GSE172409 |
| Fiorenza, Anna et al. (2016) Blocking miRNA Biogenesis in Adult Forebrain Neurons Enhances Seizure Susceptibility, Fear Memory, and Food Intake by Increasing Neuronal Responsiveness.; Cereb Cortex, 26: 1619-1633 |
|
GSE60261 |
| Fisch, Urs et al. (2020) Neonatal hypoxia-ischemia in rat elicits a region-specific neurotrophic response in SVZ microglia.; J Neuroinflammation, 17: 26 |
|
GSE97299 |
| Fischer, Caroline et al. (2021) Prevention of age-associated neuronal hyperexcitability with improved learning and attention upon knockout or antagonism of LPAR2.; Cell Mol Life Sci, 78: 1029-1050 |
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GSE136869 |
| Fischer, Jacqueline et al. (2024) Only InfantMLL-Rearranged Leukemia Is Susceptible to an Inhibition of Polo-like Kinase 1 (PLK-1) by Volasertib.; Int J Mol Sci, 25: [no pages] |
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GSE276639 |
| Fischer, Josephine et al. (2019) Safeguard function of PU.1 shapes the inflammatory epigenome of neutrophils.; Nat Immunol, 20: 546-558 |
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GSE110864 GSE110859 |
| Fischer, M Dominik et al. (2002) Expression profiling reveals metabolic and structural components of extraocular muscles.; Physiol Genomics, 9: 71-84 |
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GSE471 |
| Fischer, Marie T et al. (2012) NADPH oxidase expression in active multiple sclerosis lesions in relation to oxidative tissue damage and mitochondrial injury.; Brain, 135: 886-99 |
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GSE32915 |
| Fischer, Marie Therese et al. (2013) Disease-specific molecular events in cortical multiple sclerosis lesions.; Brain, 136: 1799-815 |
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GSE32645 |
| Fischer, Tom T et al. (2021) Neuronal calcium sensor 1 (NCS1) dependent modulation of neuronal morphology and development.; FASEB J, 35: e21873 |
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GSE171202 |
| Fischer, Vincent et al. (2023) Sperm chromatin accessibility's involvement in the intergenerational effects of stress hormone receptor activation.; Transl Psychiatry, 13: 378 |
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GSE234039 |
| Fischl, Adrian M et al. (2014) Activity-dependent genes in mouse olfactory sensory neurons.; Chem Senses, 39: 439-49 |
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GSE49998 |
| Fisher, J B et al. (2017) GATA6 is essential for endoderm formation from human pluripotent stem cells.; Biol Open, 6: 1084-1095 |
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GSE81898 |
| Fiskus, Warren et al. (2019) Superior efficacy of cotreatment with BET protein inhibitor and BCL2 or MCL1 inhibitor against AML blast progenitor cells.; Blood Cancer J, 9: 4 |
|
GSE93578 |
| Fissolo, Nicolás et al. (2012) Treatment with MOG-DNA vaccines induces CD4+CD25+FoxP3+ regulatory T cells and up-regulates genes with neuroprotective functions in experimental autoimmune encephalomyelitis.; J Neuroinflammation, 9: 139 |
|
GSE30482 |
| Fittschen, M et al. (2015) Genetic ablation of ataxin-2 increases several global translation factors in their transcript abundance but decreases translation rate.; Neurogenetics, 16: 181-92 |
|
GSE55177 |
| Fitz, Nicholas F et al. (2020) Trem2 deficiency differentially affects phenotype and transcriptome of human APOE3 and APOE4 mice.; Mol Neurodegener, 15: 41 |
|
GSE144125 |
| Fitz, Nicholas F et al. (2021) Phospholipids of APOE lipoproteins activate microglia in an isoform-specific manner in preclinical models of Alzheimer's disease.; Nat Commun, 12: 3416 |
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GSE158962.3 GSE158962.2 GSE158962.1 |
| Fitz, Nicholas F et al. (2023) Extracellular Vesicles in Young Serum Contribute to the Restoration of Age-Related Brain Transcriptomes and Cognition in Old Mice.; Int J Mol Sci, 24: [no pages] |
|
GSE234667 |
| Fitzgerald, Eamon et al. (2023) Sex and cell-specific gene expression in corticolimbic brain regions associated with psychiatric disorders revealed by bulk and single-nuclei RNA sequencing.; EBioMedicine, 95: 104749 |
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GSE162419 |
| Fitzgibbons, Timothy P et al. (2011) Similarity of mouse perivascular and brown adipose tissues and their resistance to diet-induced inflammation.; Am J Physiol Heart Circ Physiol, 301: H1425-37 |
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GSE28440 |
| Fitzpatrick, Zachary et al. (2020) Gut-educated IgA plasma cells defend the meningeal venous sinuses.; Nature, 587: 472-476 |
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GSE135733 GSE135620 |
| Fiumara, Martina et al. (2023) Genotoxic effects of base and prime editing in human hematopoietic stem cells.; Nat Biotechnol, [no vol.]: [no pages] |
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GSE218462 |
| Fixsen, Bethany R et al. (2023) SALL1 enforces microglia-specific DNA binding and function of SMADs to establish microglia identity.; Nat Immunol, 24: 1188-1199 |
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GSE226091.1 GSE226091.2 |
| Fjeldbo, Christina Sæten et al. (2012) Gastrin upregulates the prosurvival factor secretory clusterin in adenocarcinoma cells and in oxyntic mucosa of hypergastrinemic rats.; Am J Physiol Gastrointest Liver Physiol, 302: G21-33 |
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GSE32869 |
| Flaherty, Erin et al. (2019) Neuronal impact of patient-specific aberrant NRXN1? splicing.; Nat Genet, 51: 1679-1690 |
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GSE137101.1 GSE137127 |
| Flamand, Mathieu N et al. (2022) m6A and YTHDF proteins contribute to the localization of select neuronal mRNAs.; Nucleic Acids Res, 50: 4464-4483 |
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GSE171199 |
| Flamand, Mathieu N et al. (2022) Single-molecule identification of the target RNAs of different RNA binding proteins simultaneously in cells.; Genes Dev, 36: 1002-1015 |
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GSE201538 |
| Flamier, Anthony et al. (2023) Human iPS cell-derived sensory neurons can be infected by SARS-CoV-2.; iScience, 26: 107690 |
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GSE227528 |
| Flatscher-Bader, Traute et al. (2010) Genes associated with alcohol abuse and tobacco smoking in the human nucleus accumbens and ventral tegmental area.; Alcohol Clin Exp Res, 34: 1291-302 |
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GSE20568 |
| Flatz, Lukas et al. (2011) Single-cell gene-expression profiling reveals qualitatively distinct CD8 T cells elicited by different gene-based vaccines.; Proc Natl Acad Sci U S A, 108: 5724-9 |
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GSE42459 |
| Flavell, Steven W et al. (2008) Genome-wide analysis of MEF2 transcriptional program reveals synaptic target genes and neuronal activity-dependent polyadenylation site selection.; Neuron, 60: 1022-38 |
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GSE13539 GSE13538 GSE13537 |
| Flechner, Stuart M et al. (2004) De novo kidney transplantation without use of calcineurin inhibitors preserves renal structure and function at two years.; Am J Transplant, 4: 1776-85 |
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GSE1743 |
| Flechner, Stuart M et al. (2004) Kidney transplant rejection and tissue injury by gene profiling of biopsies and peripheral blood lymphocytes.; Am J Transplant, 4: 1475-89 |
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GSE1563 |
| Fledrich, R et al. (2018) Targeting myelin lipid metabolism as a potential therapeutic strategy in a model of CMT1A neuropathy.; Nat Commun, 9: 3025 |
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GSE115930 |
| Fleige, Anne et al. (2007) Serum response factor contributes selectively to lymphocyte development.; J Biol Chem, 282: 24320-8 |
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GSE7412 |
| Fleming, Jonathan T et al. (2019) Insight into the Etiology of Undifferentiated Soft Tissue Sarcomas from a Novel Mouse Model.; Mol Cancer Res, 17: 1024-1035 |
|
GSE89419 |
| Fleming, Joseph D et al. (2013) NF-Y coassociates with FOS at promoters, enhancers, repetitive elements, and inactive chromatin regions, and is stereo-positioned with growth-controlling transcription factors.; Genome Res, 23: 1195-209 |
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GSE40215 |
| Fleming, Joseph D et al. (2015) STAT3 acts through pre-existing nucleosome-depleted regions bound by FOS during an epigenetic switch linking inflammation to cancer.; Epigenetics Chromatin, 8: 7 |
|
GSE64536 |
| Fletcher, Michael N C et al. (2013) Master regulators of FGFR2 signalling and breast cancer risk.; Nat Commun, 4: 2464 |
|
GSE48928 |
| Fletcher, Russell B et al. (2011) p63 regulates olfactory stem cell self-renewal and differentiation.; Neuron, 72: 748-59 |
|
GSE31972 |
| Fletcher-Sananikone, Eliot et al. (2021) Elimination of Radiation-Induced Senescence in the Brain Tumor Microenvironment Attenuates Glioblastoma Recurrence.; Cancer Res, 81: 5935-5947 |
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GSE184451 |
| Fliegauf, Maximilian et al. (2026) Distinct origins and niches determine the cellular responsiveness of CNS macrophages after repopulation.; Nat Immunol, 27: 961-974 |
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GSE318159 GSE318071 GSE294773 |
| Fliegner, Daniela et al. (2010) Female sex and estrogen receptor-beta attenuate cardiac remodeling and apoptosis in pressure overload.; Am J Physiol Regul Integr Comp Physiol, 298: R1597-606 |
|
GSE18224 |
| Flight, Robert M et al. (2014) categoryCompare, an analytical tool based on feature annotations.; Front Genet, 5: 98 |
|
GSE54356 |
| Flint, Alyssa C et al. (2023) Combined CDK4/6 and ERK1/2 Inhibition Enhances Antitumor Activity in NF1-Associated Plexiform Neurofibroma.; Clin Cancer Res, 29: 3438-3456 |
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GSE213786 GSE213787 |
| Flores, Adrian et al. (2024) Neurobehavioral Characterization of Perinatal Oxycodone-Exposed Offspring in Early Adolescence.; J Neuroimmune Pharmacol, 19: 29 |
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GSE265842 |
| Flores-León, M et al. (2021) Transcriptional Profiles Reveal Deregulation of Lipid Metabolism and Inflammatory Pathways in Neurons Exposed to Palmitic Acid.; Mol Neurobiol, 58: 4639-4651 |
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GSE166985 |
| Flores-Mendez, Marco et al. (2024) IMPDH2 filaments protect from neurodegeneration in AMPD2 deficiency.; bioRxiv, [no vol.]: [no pages] |
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GSE253045 |
| Florio, Marta et al. (2015) Human-specific gene ARHGAP11B promotes basal progenitor amplification and neocortex expansion.; Science, 347: 1465-70 |
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GSE65000.1 GSE65000.2 |
| Floriou-Servou, Amalia et al. (2018) Distinct Proteomic, Transcriptomic, and Epigenetic Stress Responses in Dorsal and Ventral Hippocampus.; Biol Psychiatry, [no vol.]: [no pages] |
|
GSE100236 |
| Floris, Gabriele et al. (2024) Psilocybin reduces heroin seeking behavior and modulates inflammatory gene expression in the nucleus accumbens and prefrontal cortex of male rats.; bioRxiv, [no vol.]: [no pages] |
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GSE235175 |
| Floruta, Crina M et al. (2017) Default Patterning Produces Pan-cortical Glutamatergic and CGE/LGE-like GABAergic Neurons from Human Pluripotent Stem Cells.; Stem Cell Reports, 9: 1463-1476 |
|
GSE93351 |
| Flowers, Matthew T et al. (2006) Cholestasis and hypercholesterolemia in SCD1-deficient mice fed a low-fat, high-carbohydrate diet.; J Lipid Res, 47: 2668-80 |
|
GSE3889 |
| Floy, Martha E et al. (2021) Developmental lineage of human pluripotent stem cell-derived cardiac fibroblasts affects their functional phenotype.; FASEB J, 35: e21799 |
|
GSE168380 |
| Flusberg, Deborah A et al. (2013) Cells surviving fractional killing by TRAIL exhibit transient but sustainable resistance and inflammatory phenotypes.; Mol Biol Cell, 24: 2186-200 |
|
GSE33340 |
| Flygare, Johan et al. (2011) HIF1alpha synergizes with glucocorticoids to promote BFU-E progenitor self-renewal.; Blood, 117: 3435-44 |
|
GSE26086 |
| Flynn, Benjamin P et al. (2021) Corticosterone pattern-dependent glucocorticoid receptor binding and transcriptional regulation within the liver.; PLoS Genet, 17: e1009737 |
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GSE171647 |
| Flynn, James M et al. (2012) Proteogenomics of synaptosomal mitochondrial oxidative stress.; Free Radic Biol Med, 53: 1048-60 |
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GSE39372 |
| Flynn, James M et al. (2013) Late-life rapamycin treatment reverses age-related heart dysfunction.; Aging Cell, 12: 851-62 |
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GSE48043 |
| Flynn, Mairéad et al. (2020) Altered gene regulation as a candidate mechanism by which ciliopathy gene SDCCAG8 contributes to schizophrenia and cognitive function.; Hum Mol Genet, 29: 407-417 |
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GSE142333 |
| Focchi, Elisa et al. (2022) ATM rules neurodevelopment and glutamatergic transmission in the hippocampus but not in the cortex.; Cell Death Dis, 13: 616 |
|
GSE202217 |
| Fodoulian, Leon et al. (2025) A spatial single-cell atlas of the claustro-insular region uncovers key regulators of neuronal identity and excitability.; Nat Commun, 16: 7830 |
|
GSE291781 |
| Fogarty, Elizabeth A et al. (2020) SOX10-regulated promoter use defines isoform-specific gene expression in Schwann cells.; BMC Genomics, 21: 549 |
|
GSE139321 |
| Fogel, Brent L et al. (2014) Mutation of senataxin alters disease-specific transcriptional networks in patients with ataxia with oculomotor apraxia type 2.; Hum Mol Genet, 23: 4758-69 |
|
GSE61324 |
| Foijer, Floris et al. (2013) Spindle checkpoint deficiency is tolerated by murine epidermal cells but not hair follicle stem cells.; Proc Natl Acad Sci U S A, 110: 2928-33 |
|
GSE42698 |
| Fok, Wilson C et al. (2014) Combined treatment of rapamycin and dietary restriction has a larger effect on the transcriptome and metabolome of liver.; Aging Cell, 13: 311-9 |
|
GSE40977 |
| Fok, Wilson C et al. (2014) Short-term rapamycin treatment in mice has few effects on the transcriptome of white adipose tissue compared to dietary restriction.; Mech Ageing Dev, 140: 23-9 |
|
GSE52825 |
| Fokken, Claudia et al. (2024) Interfering with aggregated α-synuclein in advanced melanoma leads to a major upregulation of MHC class II proteins.; Melanoma Res, [no vol.]: [no pages] |
|
GSE240854 |
| Foley, Kate E et al. (2019) Transcriptional profiling predicts running promotes cerebrovascular remodeling in young but not midlife mice.; BMC Genomics, 20: 860 |
|
GSE132930 |
| Folgueira, Cintia et al. (2024) Remodeling p38 signaling in muscle controls locomotor activity via IL-15.; Sci Adv, 10: eadn5993 |
|
GSE263912 |
| Folkersen, Lasse et al. (2012) Prediction of ischemic events on the basis of transcriptomic and genomic profiling in patients undergoing carotid endarterectomy.; Mol Med, 18: 669-75 |
|
GSE21545 |
| Folmsbee, Stephen Sai et al. (2016) ?T-catenin in restricted brain cell types and its potential connection to autism.; J Mol Psychiatry, 4: 2 |
|
GSE83084 |
| Foà, Robin et al. (2014) Chlorambucil plus rituximab with or without maintenance rituximab as first-line treatment for elderly chronic lymphocytic leukemia patients.; Am J Hematol, 89: 480-6 |
|
GSE35935 |