List of all 22,539 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Fomchenko, Elena I et al. (2011) Recruited cells can become transformed and overtake PDGF-induced murine gliomas in vivo during tumor progression.; PLoS One, 6: e20605 |
|
GSE30016 |
| Fong, Abraham P et al. (2012) Genetic and epigenetic determinants of neurogenesis and myogenesis.; Dev Cell, 22: 721-35 |
|
GSE34907 |
| Fong, Abraham P et al. (2015) Conversion of MyoD to a neurogenic factor: binding site specificity determines lineage.; Cell Rep, 10: 1937-46 |
|
GSE64627 |
| Fong, Bensun C et al. (2022) The Rb/E2F axis is a key regulator of the molecular signatures instructing the quiescent and activated adult neural stem cell state.; Cell Rep, 41: 111578 |
|
GSE190764 GSE190765 |
| Fong, Chui-Yee et al. (2009) A three dimensional anchorage independent in vitro system for the prolonged growth of embryoid bodies to study cancer cell behaviour and anticancer agents.; Stem Cell Rev, 5: 410-9 |
|
GSE16484 |
| Fong, Chui-Yee et al. (2011) Human Wharton's jelly stem cells have unique transcriptome profiles compared to human embryonic stem cells and other mesenchymal stem cells.; Stem Cell Rev, 7: 1-16 |
|
GSE20124 GSE20125 |
| Fong, Chun Yew et al. (2015) BET inhibitor resistance emerges from leukaemia stem cells.; Nature, 525: 538-42 |
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GSE63575 |
| Fong, Eliza Li Shan et al. (2018) Generation of matched patient-derived xenograft in vitro-in vivo models using 3D macroporous hydrogels for the study of liver cancer.; Biomaterials, 159: 229-240 |
|
GSE109903 |
| Fong, Ka-Wing et al. (2022) PALI1 promotes tumor growth through competitive recruitment of PRC2 to G9A-target chromatin for dual epigenetic silencing.; Mol Cell, 82: 4611-4626.e7 |
|
GSE175696 |
| Fong, Nova et al. (2014) Pre-mRNA splicing is facilitated by an optimal RNA polymerase II elongation rate.; Genes Dev, 28: 2663-76 |
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GSE63375.1 GSE63375.2 GSE63375.3 |
| Fong, Sylvia et al. (2010) CC3/TIP30 affects DNA damage repair.; BMC Cell Biol, 11: 23 |
|
GSE20633 |
| Fonseca-Gomes, João et al. (2024) A small TAT-TrkB peptide prevents BDNF receptor cleavage and restores synaptic physiology in Alzheimer's disease.; Mol Ther, [no vol.]: [no pages] |
|
GSE271487 |
| Fontaine, J-F et al. (2008) Microarray analysis refines classification of non-medullary thyroid tumours of uncertain malignancy.; Oncogene, 27: 2228-36 |
|
GSE6339 |
| Fontana, Mary F et al. (2015) JUNB is a key transcriptional modulator of macrophage activation.; J Immunol, 194: 177-86 |
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GSE50542 |
| Fontenot, Jason D et al. (2005) Regulatory T cell lineage specification by the forkhead transcription factor foxp3.; Immunity, 22: 329-41 |
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GSE2389 |
| Fontenot, Miles R et al. (2017) Novel transcriptional networks regulated by CLOCK in human neurons.; Genes Dev, 31: 2121-2135 |
|
GSE96659 |
| Fontes, Mariana M et al. (2017) Activity-Dependent Regulation of Alternative Cleavage and Polyadenylation During Hippocampal Long-Term Potentiation.; Sci Rep, 7: 17377 |
|
GSE84643 GSE84503 |
| Foo, Lynette C et al. (2011) Development of a method for the purification and culture of rodent astrocytes.; Neuron, 71: 799-811 |
|
GSE26066 |
| Foong, Charlene Shu-Fen et al. (2012) Glioma-propagating cells as an in vitro screening platform: PLK1 as a case study.; J Biomol Screen, 17: 1136-50 |
|
GSE36782 |
| Foong, Yee Hoon et al. (2024) TET1 displays catalytic and non-catalytic functions in the adult mouse cortex.; Epigenetics, 19: 2374979 |
|
GSE271376 |
| Foran, Emily et al. (2011) Motor neuron impairment mediated by a sumoylated fragment of the glial glutamate transporter EAAT2.; Glia, 59: 1719-31 |
|
GSE26070 |
| Forbes, Nicole et al. (2012) Identification of adaptive mutations in the influenza A virus non-structural 1 gene that increase cytoplasmic localization and differentially regulate host gene expression.; PLoS One, 8: e84673 |
|
GSE48217 |
| Forcales, Sonia V et al. (2012) Signal-dependent incorporation of MyoD-BAF60c into Brg1-based SWI/SNF chromatin-remodelling complex.; EMBO J, 31: 301-16 |
|
GSE24573 |
| Forcella, Matilde et al. (2022) Is Cadmium Toxicity Tissue-Specific? Toxicogenomics Studies Reveal Common and Specific Pathways in Pulmonary, Hepatic, and Neuronal Cell Models.; Int J Mol Sci, 23: [no pages] |
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GSE190101 GSE190100 |
| Ford, Catriona A et al. (2025) Targeting the PREX2/RAC1/PI3Kβ Signaling Axis Confers Sensitivity to Clinically Relevant Therapeutic Approaches in Melanoma.; Cancer Res, 85: 808-824 |
|
GSE281123 |
| Ford, Kaitlyn et al. (2024) A global transcriptional atlas of the effect of acute sleep deprivation in the mouse frontal cortex.; iScience, 27: 110752 |
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GSE211088.2 GSE211088.1 |
| Forman, Thomas E et al. (2024) PDGFRα signaling regulates Srsf3 transcript binding to affect PI3K signaling and endosomal trafficking.; bioRxiv, [no vol.]: [no pages] |
|
GSE263169 |
| Formicola, Daniela et al. (2016) An 18 gene expression-based score classifier predicts the clinical outcome in stage 4 neuroblastoma.; J Transl Med, 14: 142 |
|
GSE79910 |
| Formicola, Daniela et al. (2023) CFDP1is a neuroblastoma susceptibility gene that regulates transcription factors of the noradrenergic cell identity.; HGG Adv, 4: 100158 |
|
GSE216674 |
| Forner, Stefania et al. (2021) Systematic phenotyping and characterization of the 5xFAD mouse model of Alzheimer's disease.; Sci Data, 8: 270 |
|
GSE168137 |
| Forouhan, Mitra et al. (2022) AR cooperates with SMAD4 to maintain skeletal muscle homeostasis.; Acta Neuropathol, 143: 713-731 |
|
GSE185977 |
| Forrester, Helen B et al. (2012) DNA repair genes: alternative transcription and gene expression at the exon level in response to the DNA damaging agent, ionizing radiation.; PLoS One, 7: e53358 |
|
GSE26841 GSE41840 |
| Forrester, Helen B et al. (2013) Genome-wide analysis using exon arrays demonstrates an important role for expression of extra-cellular matrix, fibrotic control and tissue remodelling genes in Dupuytren's disease.; PLoS One, 8: e59056 |
|
GSE41524 |
| Forsberg, Lars A et al. (2015) Signatures of post-zygotic structural genetic aberrations in the cells of histologically normal breast tissue that can predispose to sporadic breast cancer.; Genome Res, 25: 1521-35 |
|
GSE67374 |
| Forston, Michael D et al. (2023) Enhanced oxidative phosphorylation, re-organized intracellular signaling, and epigenetic de-silencing as revealed by oligodendrocyte translatome analysis after contusive spinal cord injury.; Sci Rep, 13: 21254 |
|
GSE225308 |
| Fortier, Simon et al. (2015) Haploinsufficiency screen highlights two distinct groups of ribosomal protein genes essential for embryonic stem cell fate.; Proc Natl Acad Sci U S A, 112: 2127-32 |
|
GSE57648 |
| Fortschegger, Klaus et al. (2021) Expression of RUNX1-JAK2 in Human Induced Pluripotent Stem Cell-Derived Hematopoietic Cells Activates the JAK-STAT and MYC Pathways.; Int J Mol Sci, 22: [no pages] |
|
GSE159261 |
| Fossale, Elisa et al. (2011) Differential effects of the Huntington's disease CAG mutation in striatum and cerebellum are quantitative not qualitative.; Hum Mol Genet, 20: 4258-67 |
|
GSE9038 |
| Foster, Evangeline M et al. (2022) Glycosylated clusterin species facilitate Aβ toxicity in human neurons.; Sci Rep, 12: 18639 |
|
GSE207466 |
| Foti, Rossana et al. (2010) Parkinson disease-associated DJ-1 is required for the expression of the glial cell line-derived neurotrophic factor receptor RET in human neuroblastoma cells.; J Biol Chem, 285: 18565-74 |
|
GSE17204 |
| Fougerat, Anne et al. (2022) ATGL-dependent white adipose tissue lipolysis controls hepatocyte PPARα activity.; Cell Rep, 39: 110910 |
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GSE165558 GSE165699 |
| Fougeron, Delphine et al. (2015) Indirect Toll-like receptor 5-mediated activation of conventional dendritic cells promotes the mucosal adjuvant activity of flagellin in the respiratory tract.; Vaccine, 33: 3331-41 |
|
GSE46421 GSE72016 |
| Foukakis, Theodoros et al. (2015) Gene expression profiling of sequential metastatic biopsies for biomarker discovery in breast cancer.; Mol Oncol, 9: 1384-91 |
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GSE54323 |
| Founds, S A et al. (2009) Altered global gene expression in first trimester placentas of women destined to develop preeclampsia.; Placenta, 30: 15-24 |
|
GSE12767 |
| Fountzilas, E et al. (2012) Identification and validation of gene expression models that predict clinical outcome in patients with early-stage laryngeal cancer.; Ann Oncol, [no vol.]: [no pages] |
|
GSE25727 |
| Fountzilas, Elena et al. (2012) A microRNA activity map of human mesenchymal tumors: connections to oncogenic pathways; an integrative transcriptomic study.; BMC Genomics, 13: 332 |
|
GSE35852 |
| Fountzilas, Elena et al. (2013) Identification and validation of a multigene predictor of recurrence in primary laryngeal cancer.; PLoS One, 8: e70429 |
|
GSE27020 |
| Fournier, Antoine Philippe et al. (2023) Single-Cell Transcriptomics Identifies Brain Endothelium Inflammatory Networks in Experimental Autoimmune Encephalomyelitis.; Neurol Neuroimmunol Neuroinflamm, 10: [no pages] |
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GSE199460.2 GSE199460.1 |
| Fournier, Marcia V et al. (2006) Gene expression signature in organized and growth-arrested mammary acini predicts good outcome in breast cancer.; Cancer Res, 66: 7095-102 |
|
GSE8096 |
| Fowler, Colin E et al. (2025) The PRMT5-splicing axis is a critical oncogenic vulnerability that regulates detained intron splicing.; iScience, 28: 112965 |
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GSE294247.2 |
| Fowler, Joseph Wayne M et al. (2022) Inflammatory stress signaling via NF-kB alters accessible cholesterol to upregulate SREBP2 transcriptional activity in endothelial cells.; Elife, 11: [no pages] |
|
GSE201466 |
| Fox, Daniel K et al. (2014) p53 and ATF4 mediate distinct and additive pathways to skeletal muscle atrophy during limb immobilization.; Am J Physiol Endocrinol Metab, 307: E245-61 |
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GSE62897.1 GSE62897.2 |
| Fox, Megan E et al. (2023) Adaptations in Nucleus Accumbens Neuron Subtypes Mediate Negative Affective Behaviors in Fentanyl Abstinence.; Biol Psychiatry, 93: 489-501 |
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GSE218580 GSE209969 |
| Fox, Rebecca M et al. (2010) The CrebA/Creb3-like transcription factors are major and direct regulators of secretory capacity.; J Cell Biol, 191: 479-92 |
|
GSE23334 |
| Fox, S N et al. (2022) Estrogen-related receptor gamma regulates mitochondrial and synaptic genes and modulates vulnerability to synucleinopathy.; NPJ Parkinsons Dis, 8: 106 |
|
GSE198216 GSE198217 |
| Foygel, Kira et al. (2008) A novel and critical role for Oct4 as a regulator of the maternal-embryonic transition.; PLoS One, 3: e4109 |
|
GSE13981 |
| Fradejas-Villar, Noelia et al. (2021) Missense mutation in selenocysteine synthase causes cardio-respiratory failure and perinatal death in mice which can be compensated by selenium-independent GPX4.; Redox Biol, 48: 102188 |
|
GSE181852 |
| Fradejas-Villar, Noelia et al. (2021) The Effect of tRNA[Ser]SecIsopentenylation on Selenoprotein Expression.; Int J Mol Sci, 22: [no pages] |
|
GSE183923 |
| Frahm, Krystle A et al. (2016) Research Resource: The Dexamethasone Transcriptome in Hypothalamic Embryonic Neural Stem Cells.; Mol Endocrinol, 30: 144-54 |
|
GSE55113 GSE95363 |
| Fraire, Claudette R et al. (2024) An imbalance between proliferation and differentiation underlies the development of microRNA-defective pineoblastoma.; bioRxiv, [no vol.]: [no pages] |
|
GSE255907 GSE255910 |
| Fraire, Claudette R et al. (2025) An imbalance between proliferation and differentiation underlies the development of microRNA-defective pineoblastoma.; Genes Dev, [no vol.]: [no pages] |
|
GSE255906 |
| Franci, Christian et al. (2013) Biomarkers of residual disease, disseminated tumor cells, and metastases in the MMTV-PyMT breast cancer model.; PLoS One, 8: e58183 |
|
GSE43566 |
| Francis, Chantal et al. (2014) Divergence of RNA localization between rat and mouse neurons reveals the potential for rapid brain evolution.; BMC Genomics, 15: 883 |
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GSE61087 GSE61082 GSE61086 GSE61081 GSE61083 |
| Francis, Santiyagu M Savarimuthu et al. (2009) Expression profiling identifies genes involved in emphysema severity.; Respir Res, 10: 81 |
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GSE17770 |
| Franck, Luisa et al. (2025) Elevated hexosylceramides in Parkinson's disease cause gene upregulations in neurons mimicking responses to pathogens.; NPJ Parkinsons Dis, 11: 268 |
|
GSE262573 |
| Franco, Hector L et al. (2011) Nonsense mutations of the bHLH transcription factor TWIST2 found in Setleis Syndrome patients cause dysregulation of periostin.; Int J Biochem Cell Biol, 43: 1523-31 |
|
GSE16524 |
| Franco, Luis M et al. (2013) Integrative genomic analysis of the human immune response to influenza vaccination.; Elife, 2: e00299 |
|
GSE48023 GSE48018 |
| Franco, Luis M et al. (2019) Immune regulation by glucocorticoids can be linked to cell type-dependent transcriptional responses.; J Exp Med, 216: 384-406 |
|
GSE112101 |
| Franco, Marcelo De et al. (2010) Transcriptome of normal lung distinguishes mouse lines with different susceptibility to inflammation and to lung tumorigenesis.; Cancer Lett, 294: 187-94 |
|
GSE16510 |
| Frank, Amanda K et al. (2011) The codon 72 polymorphism of p53 regulates interaction with NF-{kappa}B and transactivation of genes involved in immunity and inflammation.; Mol Cell Biol, 31: 1201-13 |
|
GSE26851 |
| Frank, Christopher L et al. (2015) Regulation of chromatin accessibility and Zic binding at enhancers in the developing cerebellum.; Nat Neurosci, 18: 647-56 |
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GSE60731.2 GSE60731.1 |
| Frank, Christopher L et al. (2016) HDAC inhibitors cause site-specific chromatin remodeling at PU.1-bound enhancers in K562 cells.; Epigenetics Chromatin, 9: 15 |
|
GSE74999 |
| Frank, Daria et al. (2023) Germ line variant GFI1-36N affects DNA repair and sensitizes AML cells to DNA damage and repair therapy.; Blood, 142: 2175-2191 |
|
GSE195955 |
| Frank, Mark Barton et al. (2009) Disease-associated pathophysiologic structures in pediatric rheumatic diseases show characteristics of scale-free networks seen in physiologic systems: implications for pathogenesis and treatment.; BMC Med Genomics, 2: 9 |
|
GSE11083 |
| Frank, Natasha Y et al. (2006) Regulation of myogenic progenitor proliferation in human fetal skeletal muscle by BMP4 and its antagonist Gremlin.; J Cell Biol, 175: 99-110 |
|
GSE26869 |
| Franke, Andreas et al. (2011) Antibodies against CD20 or B-cell receptor induce similar transcription patterns in human lymphoma cell lines.; PLoS One, 6: e16596 |
|
GSE23394 |
| François, Liesbeth et al. (2024) Identification of gene regulatory networks affected across drug-resistant epilepsies.; Nat Commun, 15: 2180 |
|
GSE256068 |
| Förster, Susann et al. (2011) THBS4, a novel stromal molecule of diffuse-type gastric adenocarcinomas, identified by transcriptome-wide expression profiling.; Mod Pathol, [no vol.]: [no pages] |
|
GSE22377 |