List of all 22,539 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Franke, Martin et al. (2022) Duplications disrupt chromatin architecture and rewire GPR101-enhancer communication in X-linked acrogigantism.; Am J Hum Genet, 109: 553-570 |
|
GSE193113 |
| Franke, Niels E et al. (2016) Exocytosis of polyubiquitinated proteins in bortezomib-resistant leukemia cells: a role for MARCKS in acquired resistance to proteasome inhibitors.; Oncotarget, 7: 74779-74796 |
|
GSE74634 |
| Franklin, Bernardo S et al. (2009) Malaria primes the innate immune response due to interferon-gamma induced enhancement of toll-like receptor expression and function.; Proc Natl Acad Sci U S A, 106: 5789-94 |
|
GSE15221 |
| Franko, Andras et al. (2013) Liver adapts mitochondrial function to insulin resistant and diabetic states in mice.; J Hepatol, [no vol.]: [no pages] |
|
GSE39752 |
| Franks, Jennifer M et al. (2019) A Machine Learning Classifier for Assigning Individual Patients With Systemic Sclerosis to Intrinsic Molecular Subsets.; Arthritis Rheumatol, 71: 1701-1710 |
|
GSE134310 |
| Franks, S E et al. (2012) Transgenic IGF-IR overexpression induces mammary tumors with basal-like characteristics, whereas IGF-IR-independent mammary tumors express a claudin-low gene signature.; Oncogene, [no vol.]: [no pages] |
|
GSE32152 |
| Fransecky, L et al. (2016) Silencing of GATA3 defines a novel stem cell-like subgroup of ETP-ALL.; J Hematol Oncol, 9: 95 |
|
GSE78166 |
| Franssen, Delphine et al. (2023) Perinatal exposure to the fungicide ketoconazole alters hypothalamic control of puberty in female rats.; Front Endocrinol (Lausanne), 14: 1140886 |
|
GSE225359 |
| Franz, Henriette et al. (2019) DOT1L promotes progenitor proliferation and primes neuronal layer identity in the developing cerebral cortex.; Nucleic Acids Res, 47: 168-183 |
|
GSE95832 GSE95833 |
| Frasor, Jonna et al. (2004) Selective estrogen receptor modulators: discrimination of agonistic versus antagonistic activities by gene expression profiling in breast cancer cells.; Cancer Res, 64: 1522-33 |
|
GSE848 |
| Frasor, Jonna et al. (2006) Gene expression preferentially regulated by tamoxifen in breast cancer cells and correlations with clinical outcome.; Cancer Res, 66: 7334-40 |
|
GSE4025 |
| Frasor, Jonna et al. (2009) Positive cross-talk between estrogen receptor and NF-kappaB in breast cancer.; Cancer Res, 69: 8918-25 |
|
GSE11467 |
| Frazier, Hilaree N et al. (2019) Long-term intranasal insulin aspart: a profile of gene expression, memory, and insulin receptors in aged F344 rats.; J Gerontol A Biol Sci Med Sci, [no vol.]: [no pages] |
|
GSE130098 |
| Frederick, David W et al. (2016) Loss of NAD Homeostasis Leads to Progressive and Reversible Degeneration of Skeletal Muscle.; Cell Metab, 24: 269-82 |
|
GSE74570 |
| Frederick, Natalie M et al. (2019) Loss of the dystonia gene Thap1 leads to transcriptional deficits that converge on common pathogenic pathways in dystonic syndromes.; Hum Mol Genet, 28: 1343-1356 |
|
GSE123880 |
| Frederico, Bruno et al. (2022) DNGR-1-tracing marks an ependymal cell subset with damage-responsive neural stem cell potential.; Dev Cell, 57: 1957-1975.e9 |
|
GSE145824 |
| Frederiksen, C M et al. (2008) Transcriptional profiling of myotubes from patients with type 2 diabetes: no evidence for a primary defect in oxidative phosphorylation genes.; Diabetologia, 51: 2068-77 |
|
GSE12643 |
| Fredlund, Elina et al. (2024) MOXD1is a lineage-specific gene and a tumor suppressor in neuroblastoma.; Sci Adv, 10: eado1583 |
|
GSE242157 |
| Fredriksson, Katarina et al. (2008) Dysregulation of mitochondrial dynamics and the muscle transcriptome in ICU patients suffering from sepsis induced multiple organ failure.; PLoS One, 3: e3686 |
|
GSE13205 |
| Fredriksson, Lisa et al. (2014) Drug-induced endoplasmic reticulum and oxidative stress responses independently sensitize toward TNFα-mediated hepatotoxicity.; Toxicol Sci, 140: 144-59 |
|
GSE54255 GSE54254 |
| Freedman, Jennifer A et al. (2011) A methodology for utilization of predictive genomic signatures in FFPE samples.; BMC Med Genomics, 4: 58 |
|
GSE29598 |
| Freeman, Willard M et al. (2009) Transcriptomic comparison of the retina in two mouse models of diabetes.; J Ocul Biol Dis Infor, 2: 202-213 |
|
GSE19122 |
| Freeman, Willard M et al. (2010) Gene expression changes in the medial prefrontal cortex and nucleus accumbens following abstinence from cocaine self-administration.; BMC Neurosci, 11: 29 |
|
GSE20885 |
| Fregona, Vincent et al. (2023) Stem cell-like reprogramming is required for leukemia-initiating activity in B-ALL.; J Exp Med, 221: [no pages] |
|
GSE210925 |
| Freihen, Vivien et al. (2020) SNAIL1 employs β-Catenin-LEF1 complexes to control colorectal cancer cell invasion and proliferation.; Int J Cancer, 146: 2229-2242 |
|
GSE115716 |
| Freilich, Robert W et al. (2013) Integrated expression profiles of mRNA and miRNA in polarized primary murine microglia.; PLoS One, 8: e79416 |
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GSE49329 |
| Freitag, Kiara et al. (2023) Diverse but unique astrocytic phenotypes during embryonic stem cell differentiation, culturing and development.; Commun Biol, 6: 40 |
|
GSE189745 |
| Freitas, Andiara E et al. (2024) Planar cell polarity proteins mediate ketamine-induced restoration of glutamatergic synapses in prefrontal cortical neurons in a mouse model for chronic stress.; Nat Commun, 15: 4945 |
|
GSE191016 |
| Freitas-Andrade, Moises et al. (2023) Astroglial Hmgb1 regulates postnatal astrocyte morphogenesis and cerebrovascular maturation.; Nat Commun, 14: 4965 |
|
GSE224784 |
| Freixo, Francisco et al. (2018) NEK7 regulates dendrite morphogenesis in neurons via Eg5-dependent microtubule stabilization.; Nat Commun, 9: 2330 |
|
GSE113680 |
| Fremuth, Leigh Ellen et al. (2025) Neuraminidase 1 regulates neuropathogenesis by governing the cellular state of microglia via modulation of Trem2 sialylation.; Cell Rep, 44: 115204 |
|
GSE284427 |
| French, Pim J et al. (2007) Identification of differentially regulated splice variants and novel exons in glial brain tumors using exon expression arrays.; Cancer Res, 67: 5635-42 |
|
GSE9385 |
| Frentsch, Marco et al. (2013) CD40L expression permits CD8+ T cells to execute immunologic helper functions.; Blood, 122: 405-12 |
|
GSE44126 |
| Frey, Anna et al. (2014) Experimental heart failure causes depression-like behavior together with differential regulation of inflammatory and structural genes in the brain.; Front Behav Neurosci, 8: 376 |
|
GSE55280 |
| Frey, Isabelle M et al. (2007) Profiling at mRNA, protein, and metabolite levels reveals alterations in renal amino acid handling and glutathione metabolism in kidney tissue of Pept2-/- mice.; Physiol Genomics, 28: 301-10 |
|
GSE1430 |
| Freyburger, Marlène et al. (2016) EphA4 is Involved in Sleep Regulation but Not in the Electrophysiological Response to Sleep Deprivation.; Sleep, 39: 613-24 |
|
GSE77393 |
| Frias-Anaya, Eduardo et al. (2024) Mild Hypoxia Accelerates Cerebral Cavernous Malformation Disease Through CX3CR1-CX3CL1 Signaling.; Arterioscler Thromb Vasc Biol, 44: 1246-1264 |
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GSE236162 GSE261224 GSE236163 |
| Fric, Jan et al. (2012) Calcineurin/NFAT signalling inhibits myeloid haematopoiesis.; EMBO Mol Med, 4: 269-82 |
|
GSE29094 |
| Fric, Jan et al. (2014) Calcium and calcineurin-NFAT signaling regulate granulocyte-monocyte progenitor cell cycle via Flt3-L.; Stem Cells, 32: 3232-44 |
|
GSE47208 |
| Fricano-Kugler, Catherine et al. (2019) CYFIP1 overexpression increases fear response in mice but does not affect social or repetitive behavioral phenotypes.; Mol Autism, 10: 25 |
|
GSE125697 |
| Friedli, Marc et al. (2014) Loss of transcriptional control over endogenous retroelements during reprogramming to pluripotency.; Genome Res, 24: 1251-9 |
|
GSE57866 |
| Friedman, Brad A et al. (2018) Diverse Brain Myeloid Expression Profiles Reveal Distinct Microglial Activation States and Aspects of Alzheimer's Disease Not Evident in Mouse Models.; Cell Rep, 22: 832-847 |
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GSE89482 GSE93180 GSE93179 GSE95587 |
| Friedman, Daphne R et al. (2009) A genomic approach to improve prognosis and predict therapeutic response in chronic lymphocytic leukemia.; Clin Cancer Res, 15: 6947-55 |
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GSE10137 GSE10138 |
| Friedman, L K et al. (2013) Transcriptome profiling of hippocampal CA1 after early-life seizure-induced preconditioning may elucidate new genetic therapies for epilepsy.; Eur J Neurosci, 38: 2139-52 |
|
GSE44031 |
| Friedmann-Morvinski, Dinorah et al. (2012) Dedifferentiation of neurons and astrocytes by oncogenes can induce gliomas in mice.; Science, 338: 1080-4 |
|
GSE35917 |
| Friedmann-Morvinski, Dinorah et al. (2016) Targeting NF-κB in glioblastoma: A therapeutic approach.; Sci Adv, 2: e1501292 |
|
GSE73127 |
| Friemel, Juliane et al. (2019) Characterization of HCC Mouse Models: Towards an Etiology-Oriented Subtyping Approach.; Mol Cancer Res, [no vol.]: [no pages] |
|
GSE75730 |
| Fries, Michel et al. (2023) Pou3f1 orchestrates a gene regulatory network controlling contralateral retinogeniculate projections.; Cell Rep, 42: 112985 |
|
GSE233793 |
| Friesenhagen, Judith et al. (2013) Highly pathogenic influenza viruses inhibit inflammatory response in monocytes via activation of rar-related orphan receptor ROR?.; J Innate Immun, [no vol.]: [no pages] |
|
GSE35283 |
| Frietze, Seth et al. (2010) Genomic targets of the KRAB and SCAN domain-containing zinc finger protein 263.; J Biol Chem, 285: 1393-403 |
|
GSE19146 |
| Frijters, Raoul et al. (2010) Prednisolone-induced differential gene expression in mouse liver carrying wild type or a dimerization-defective glucocorticoid receptor.; BMC Genomics, 11: 359 |
|
GSE21048 |
| Frisan, Emilie et al. (2012) Defective nuclear localization of Hsp70 is associated with dyserythropoiesis and GATA-1 cleavage in myelodysplastic syndromes.; Blood, 119: 1532-42 |
|
GSE34268 |
| Fristedt Duvefelt, Charlotte et al. (2015) Increased resistance to proteasome inhibitors in multiple myeloma mediated by cIAP2--implications for a combinatorial treatment.; Oncotarget, 6: 20621-35 |
|
GSE63520 |
| Frith, Mary E et al. (2024) Microbiota-dependent early-life programming of gastrointestinal motility.; iScience, 27: 110895 |
|
GSE241697 |
| Frith, Thomas Jr et al. (2018) Human axial progenitors generate trunk neural crest cells in vitro.; Elife, 7: [no pages] |
|
GSE109267 |
| Fritsch, Lauren E et al. (2024) STING-Dependent Signaling in Microglia or Peripheral Immune Cells Orchestrates the Early Inflammatory Response and Influences Brain Injury Outcome.; J Neurosci, 44: [no pages] |
|
GSE223784 |
| Fritsche-Guenther, Raphaela et al. (2010) De novo expression of EphA2 in osteosarcoma modulates activation of the mitogenic signalling pathway.; Histopathology, 57: 836-50 |
|
GSE14359 |
| Fritz, Sarah E et al. (2022) An alternative UPF1 isoform drives conditional remodeling of nonsense-mediated mRNA decay.; EMBO J, 41: e108898 |
|
GSE162699 |
| Fritze, Jonas et al. (2024) Single-cell RNA sequencing of aging neural progenitors reveals loss of excitatory neuron potential and a population with transcriptional immune response.; Front Neurosci, 18: 1400963 |
|
GSE261457 |
| Frodella, Christa M et al. (2024) Oxytocin and Vasopressin Gene Expression in the Brain as Potential Biomarkers for Cannabidiol Therapeutic Efficacy.; Biomedicines, 12: [no pages] |
|
GSE262437 |
| Froeling, Fieke E M et al. (2011) Retinoic acid-induced pancreatic stellate cell quiescence reduces paracrine Wnt-?-catenin signaling to slow tumor progression.; Gastroenterology, 141: 1486-97, 1497.e1-14 |
|
GSE14425 GSE14426 |
| Frosch, Maximilian et al. (2025) Microglia-neuron crosstalk through Hex-GM2-MGL2 maintains brain homeostasis.; Nature, 646: 913-924 |
|
GSE300355 |
| Frost, Thomas C et al. (2023) YAP1 and WWTR1 expression inversely correlates with neuroendocrine markers in Merkel cell carcinoma.; J Clin Invest, 133: [no pages] |
|
GSE189054 |
| Frullanti, Elisa et al. (2012) Association of lung adenocarcinoma clinical stage with gene expression pattern in noninvolved lung tissue.; Int J Cancer, 131: E643-8 |
|
GSE31267 |
| Frumm, Stacey M et al. (2013) Selective HDAC1/HDAC2 inhibitors induce neuroblastoma differentiation.; Chem Biol, 20: 713-25 |
|
GSE45587 |
| Fry, Rebecca C et al. (2007) Activation of inflammation/NF-kappaB signaling in infants born to arsenic-exposed mothers.; PLoS Genet, 3: e207 |
|
GSE7967 |
| Fry, Rebecca C et al. (2008) Genomic predictors of interindividual differences in response to DNA damaging agents.; Genes Dev, 22: 2621-6 |
|
GSE10313 |
| Frye, Cheryl A et al. (2020) Mating Enhances Expression of Hormonal and Trophic Factors in the Midbrain of Female Rats.; Front Behav Neurosci, 14: 21 |
|
GSE127272 |
| Frye, Maike et al. (2018) Matrix stiffness controls lymphatic vessel formation through regulation of a GATA2-dependent transcriptional program.; Nat Commun, 9: 1511 |
|
GSE110726 |
| Fryer, John D et al. (2011) Exercise and genetic rescue of SCA1 via the transcriptional repressor Capicua.; Science, 334: 690-3 |
|
GSE32051 |
| Fryer, Lee G D et al. (2014) The endoplasmic reticulum coat protein II transport machinery coordinates cellular lipid secretion and cholesterol biosynthesis.; J Biol Chem, 289: 4244-61 |
|
GSE52969 |
| Fryland, Tue et al. (2016) Identification of the BRD1 interaction network and its impact on mental disorder risk.; Genome Med, 8: 53 |
|
GSE79255 |
| Fröb, Franziska et al. (2019) Ep400 deficiency in Schwann cells causes persistent expression of early developmental regulators and peripheral neuropathy.; Nat Commun, 10: 2361 |
|
GSE119132 |
| Fröhlich, Henning et al. (2019) Gastrointestinal dysfunction in autism displayed by altered motility and achalasia inFoxp1+/-mice.; Proc Natl Acad Sci U S A, 116: 22237-22245 |
|
GSE138337 |
| Fröhlich, Janna et al. (2023) Transcriptional activity mediated by β-CATENIN and TCF/LEF family members is completely dispensable for survival and propagation of multiple human colorectal cancer cell lines.; Sci Rep, 13: 287 |
|
GSE199835 |
| Fu, Dah-Jiun et al. (2020) Gastric squamous-columnar junction contains a large pool of cancer-prone immature osteopontin responsive Lgr5-CD44+cells.; Nat Commun, 11: 84 |
|
GSE130003 |
| Fu, Jen-Fen et al. (2021) HOXA11plays critical roles in disease progression and response to cytarabine in AML.; Oncol Rep, 46: [no pages] |
|
GSE134586 |
| Fu, Leiping et al. (2013) Activation of HIF2? in kidney proximal tubule cells causes abnormal glycogen deposition but not tumorigenesis.; Cancer Res, 73: 2916-25 |
|
GSE45254 |
| Fu, Nai Yang et al. (2015) EGF-mediated induction of Mcl-1 at the switch to lactation is essential for alveolar cell survival.; Nat Cell Biol, 17: 365-75 |
|
GSE60450 |
| Fu, Shu-Ping et al. (2017) Genome-wide regulation of electro-acupuncture on the neural Stat5-loss-induced obese mice.; PLoS One, 12: e0181948 |
|
GSE100599 |
| Fu, Shuai et al. (2023) Autism-specific PTEN p.Ile135Leu variant and an autism genetic background combine to dysregulate cortical neurogenesis.; Am J Hum Genet, 110: 826-845 |
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GSE214323 GSE221923 |
| Fu, Shuyu et al. (2023) Syntaphilin Regulates Neutrophil Migration in Cancer.; Cancer Immunol Res, 11: 278-289 |
|
GSE190505 |
| Fu, Siling et al. (2023) c-JUN-mediated transcriptional responses in lymphatic endothelial cells are required for lung fluid clearance at birth.; Proc Natl Acad Sci U S A, 120: e2215449120 |
|
GSE213044 |
| Fu, Suneng et al. (2012) Polysome profiling in liver identifies dynamic regulation of endoplasmic reticulum translatome by obesity and fasting.; PLoS Genet, 8: e1002902 |
|
GSE39375 |
| Fu, Wenchao et al. (2025) Harnessing electroacupuncture: a promising strategy against sleep deprivation-exacerbated post-cardiac arrest brain injury.; Sci Rep, 15: 29277 |
|
GSE295500 |
| Fu, Wenxian et al. (2012) A multiply redundant genetic switch 'locks in' the transcriptional signature of regulatory T cells.; Nat Immunol, 13: 972-80 |
|
GSE40273 |
| Fu, Xiaoyong et al. (2016) FOXA1 overexpression mediates endocrine resistance by altering the ER transcriptome and IL-8 expression in ER-positive breast cancer.; Proc Natl Acad Sci U S A, 113: E6600-E6609 |
|
GSE75329 |
| Fu, Xing et al. (2009) Estimating accuracy of RNA-Seq and microarrays with proteomics.; BMC Genomics, 10: 161 |
|
GSE13744 |
| Fu, Xiu-Qing et al. (2024) Comparative transcriptomic profiling reveals a role for Olig1 in promoting axon regeneration.; Cell Rep, 43: 114514 |
|
GSE261812 |
| Fu, Xiuling et al. (2023) Restricting epigenetic activity promotes the reprogramming of transformed cells to pluripotency in a line-specific manner.; Cell Death Discov, 9: 245 |
|
GSE213224 |