List of all 22,539 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Fu, Xudong et al. (2019) Myc and Dnmt1 impede the pluripotent to totipotent state transition in embryonic stem cells.; Nat Cell Biol, 21: 835-844 |
|
GSE121459 |
| Fu, Yi et al. (2023) Mitochondrial DNA breaks activate an integrated stress response to reestablish homeostasis.; Mol Cell, 83: 3740-3753.e9 |
|
GSE214512 |
| Fu, Ying et al. (2024) Oxidative stress-initiated one-carbon metabolism drives the generation of interleukin-10-producing B cells to resolve pneumonia.; Cell Mol Immunol, 21: 19-32 |
|
GSE211327 |
| Fu, Zhongxiao et al. (2024) Microglia modulate cerebral blood flow and neurovascular coupling through ectonucleotidase CD39.; bioRxiv, [no vol.]: [no pages] |
|
GSE223314 |
| Fu, Zhongxiao et al. (2025) Microglia modulate the cerebrovascular reactivity through ectonucleotidase CD39.; Nat Commun, 16: 956 |
|
GSE245107 |
| Fuchs, Gilad et al. (2014) 4sUDRB-seq: measuring genomewide transcriptional elongation rates and initiation frequencies within cells.; Genome Biol, 15: R69 |
|
GSE57116 |
| Fuchs, Steffen et al. (2023) Defining the landscape of circular RNAs in neuroblastoma unveils a global suppressive function of MYCN.; Nat Commun, 14: 3936 |
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GSE174572 GSE174708 GSE223103 GSE181562 GSE181561 GSE174571 |
| Fuentes, Mary Esmeralda et al. (2024) Combined deletion of MEN1, ATRX and PTEN triggers development of high-grade pancreatic neuroendocrine tumors in mice.; Sci Rep, 14: 8510 |
|
GSE248606 |
| Fuentes-Duculan, Judilyn et al. (2010) A subpopulation of CD163-positive macrophages is classically activated in psoriasis.; J Invest Dermatol, 130: 2412-22 |
|
GSE18686 |
| Fuhrken, Peter G et al. (2007) Comparative, genome-scale transcriptional analysis of CHRF-288-11 and primary human megakaryocytic cell cultures provides novel insights into lineage-specific differentiation.; Exp Hematol, 35: 476-489 |
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GSE3838 GSE3839 |
| Fuhrmann, Thomas et al. (2025) The isoflavone genistein selectively stimulates major satellite repeat transcription in mouse heterochromatin.; Epigenetics Chromatin, 18: 58 |
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GSE291959 GSE291747 |
| Fujii, Sakiko et al. (2015) Characteristic expression ofMSX1,MSX2,TBX2andENTPD1in dental pulp cells.; Biomed Rep, 3: 566-572 |
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GSE66084 |
| Fujikawa, Teppei et al. (2013) Leptin engages a hypothalamic neurocircuitry to permit survival in the absence of insulin.; Cell Metab, 18: 431-44 |
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GSE48598 |
| Fujikawa, Yusuke et al. (2024) Dynamic upregulation of retinoic acid signal in the early postnatal murine heart promotes cardiomyocyte cell cycle exit and maturation.; Sci Rep, 14: 20222 |
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GSE263095 GSE263096 |
| Fujimori, Koki et al. (2018) Modeling sporadic ALS in iPSC-derived motor neurons identifies a potential therapeutic agent.; Nat Med, 24: 1579-1589 |
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GSE106382 |
| Fujimoto, Mitsuaki et al. (2012) RPA assists HSF1 access to nucleosomal DNA by recruiting histone chaperone FACT.; Mol Cell, 48: 182-94 |
|
GSE38412 |
| Fujimura, Kimino et al. (2023) Integrative systems biology characterizes immune-mediated neurodevelopmental changes in murine Zika virus microcephaly.; iScience, 26: 106909 |
|
GSE118935 |
| Fujino, Takashi et al. (2010) Function of EWS-POU5F1 in sarcomagenesis and tumor cell maintenance.; Am J Pathol, 176: 1973-82 |
|
GSE12320 |
| Fujioka, Yusuke et al. (2012) FUS-regulated region- and cell-type-specific transcriptome is associated with cell selectivity in ALS/FTLD.; Sci Rep, 3: 2388 |
|
GSE42421 |
| Fujishita, Kayoko et al. (2009) Grape seed extract acting on astrocytes reveals neuronal protection against oxidative stress via interleukin-6-mediated mechanisms.; Cell Mol Neurobiol, 29: 1121-9 |
|
GSE15285 |
| Fujita, Katsuhide et al. (2010) Identification of potential biomarkers from gene expression profiles in rat lungs intratracheally instilled with C(60) fullerenes.; Toxicology, 274: 34-41 |
|
GSE17747 |
| Fujita, Katsuhide et al. (2015) Intratracheal instillation of single-wall carbon nanotubes in the rat lung induces time-dependent changes in gene expression.; Nanotoxicology, 9: 290-301 |
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GSE50664 |
| Fujita, Tomoko et al. (2016) Hepatic stellate cells relay inflammation signaling from sinusoids to parenchyma in mouse models of immune-mediated hepatitis.; Hepatology, 63: 1325-39 |
|
GSE45413 |
| Fujiwara, Kenichiro et al. (2011) Prediction and genetic demonstration of a role for activator E2Fs in Myc-induced tumors.; Cancer Res, 71: 1924-32 |
|
GSE24594 |
| Fujiwara, Michitaka et al. (2023) Investigation into Molecular Brain Aging in Senescence-Accelerated Mouse (SAM) Model Employing Whole Transcriptomic Analysis in Search of Potential Molecular Targets for Therapeutic Interventions.; Int J Mol Sci, 24: [no pages] |
|
GSE236414 |
| Fujiwara, Takeshi et al. (2012) ASCL1-coexpression profiling but not single gene expression profiling defines lung adenocarcinomas of neuroendocrine nature with poor prognosis.; Lung Cancer, [no vol.]: [no pages] |
|
GSE2088 GSE20853 |
| Fuka, Gerhard et al. (2011) The leukemia-specific fusion gene ETV6/RUNX1 perturbs distinct key biological functions primarily by gene repression.; PLoS One, 6: e26348 |
|
GSE29639 |
| Fukuda, Kei et al. (2021) Regulation of mammalian 3D genome organization and histone H3K9 dimethylation by H3K9 methyltransferases.; Commun Biol, 4: 571 |
|
GSE169098 |
| Fukuda, Shinji et al. (2011) Bifidobacteria can protect from enteropathogenic infection through production of acetate.; Nature, 469: 543-7 |
|
GSE12998 GSE12997 |
| Fukui, Yuichiro et al. (2013) Effect of Lactobacillus brevis KB290 on the cell-mediated cytotoxic activity of mouse splenocytes: a DNA microarray analysis.; Br J Nutr, [no vol.]: 1-13 |
|
GSE41127 |
| Fukushima, Toshikazu et al. (2014) Toxicity assessment of chlorinated wastewater effluents by using transcriptome-based bioassays and Fourier transform mass spectrometry (FT-MS) analysis.; Water Res, 52: 73-82 |
|
GSE48157 |
| Fukushima, Yoko et al. (2011) Sema3E-PlexinD1 signaling selectively suppresses disoriented angiogenesis in ischemic retinopathy in mice.; J Clin Invest, 121: 1974-85 |
|
GSE27238 |
| Fukusumi, Yoshiyasu et al. (2015) Dickkopf 3 Promotes the Differentiation of a Rostrolateral Midbrain Dopaminergic Neuronal Subset In Vivo and from Pluripotent Stem Cells In Vitro in the Mouse.; J Neurosci, 35: 13385-401 |
|
GSE58813 |
| Fukuta, Makoto et al. (2014) Derivation of mesenchymal stromal cells from pluripotent stem cells through a neural crest lineage using small molecule compounds with defined media.; PLoS One, 9: e112291 |
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GSE61510 GSE60313 |
| Fulcher, Jennifer A et al. (2006) Galectin-1-matured human monocyte-derived dendritic cells have enhanced migration through extracellular matrix.; J Immunol, 177: 216-26 |
|
GSE4984 |
| Fulci, Valerio et al. (2009) Characterization of B- and T-lineage acute lymphoblastic leukemia by integrated analysis of MicroRNA and mRNA expression profiles.; Genes Chromosomes Cancer, 48: 1069-82 |
|
GSE14834.1 |
| Fulco, Charles P et al. (2016) Systematic mapping of functional enhancer-promoter connections with CRISPR interference.; Science, 354: 769-773 |
|
GSE87257 |
| Fullard, John F et al. (2021) Single-nucleus transcriptome analysis of human brain immune response in patients with severe COVID-19.; Genome Med, 13: 118 |
|
GSE164485.2 |
| Fuller, Ashley M et al. (2022) Comparative oncology reveals DNMT3B as a molecular vulnerability in undifferentiated pleomorphic sarcoma.; Cell Oncol (Dordr), 45: 1277-1295 |
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GSE200026 |
| Fulp, Carl T et al. (2008) Identification of Arx transcriptional targets in the developing basal forebrain.; Hum Mol Genet, 17: 3740-60 |
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GSE5817 GSE12609 |
| Fulton, Debra L et al. (2011) Towards resolving the transcription factor network controlling myelin gene expression.; Nucleic Acids Res, 39: 7974-91 |
|
GSE24513 |
| Fulton, Sasha L et al. (2022) Histone H3 dopaminylation in ventral tegmental area underlies heroin-induced transcriptional and behavioral plasticity in male rats.; Neuropsychopharmacology, [no vol.]: [no pages] |
|
GSE169628 |
| Fulton, Sasha L et al. (2022) Rescue of deficits by Brwd1 copy number restoration in the Ts65Dn mouse model of Down syndrome.; Nat Commun, 13: 6384 |
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GSE210117.2 GSE151255 GSE210117.1 |
| Fulton, Sasha L et al. (2023) ZBTB7A regulates MDD-specific chromatin signatures and astrocyte-mediated stress vulnerability in orbitofrontal cortex.; bioRxiv, [no vol.]: [no pages] |
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GSE214919 GSE214921 GSE214920 |
| Fumagalli, Stefano et al. (2009) Absence of nucleolar disruption after impairment of 40S ribosome biogenesis reveals an rpL11-translation-dependent mechanism of p53 induction.; Nat Cell Biol, 11: 501-8 |
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GSE13864 |
| Fumagalli, Valeria et al. (2022) Administration of aerosolized SARS-CoV-2 to K18-hACE2 mice uncouples respiratory infection from fatal neuroinvasion.; Sci Immunol, 7: eabl9929 |
|
GSE184657 |
| Funari, Vincent A et al. (2007) Cartilage-selective genes identified in genome-scale analysis of non-cartilage and cartilage gene expression.; BMC Genomics, 8: 165 |
|
GSE6565 |
| Funatsu, Nobuo et al. (2004) Gene expression analysis of the late embryonic mouse cerebral cortex using DNA microarray: identification of several region- and layer-specific genes.; Cereb Cortex, 14: 1031-44 |
|
GSE929 |
| Funayama, Yuki et al. (2023) Antidepressant Response and Stress Resilience Are Promoted by CART Peptides in GABAergic Neurons of the Anterior Cingulate Cortex.; Biol Psychiatry Glob Open Sci, 3: 87-98 |
|
GSE168172 |
| Fung, Ivan Ting Hin et al. (2020) Activation of group 2 innate lymphoid cells alleviates aging-associated cognitive decline.; J Exp Med, 217: [no pages] |
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GSE129999 GSE129923 GSE129992 GSE129996 |
| Funikov, Sergei Y et al. (2018) FUS(1-359) transgenic mice as a model of ALS: pathophysiological and molecular aspects of the proteinopathy.; Neurogenetics, 19: 189-204 |
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GSE112629 GSE130604 |
| Funk, Luke et al. (2022) The phenotypic landscape of essential human genes.; Cell, 185: 4634-4653.e22 |
|
GSE199901 |
| Funk, Owen H et al. (2022) Postmitotic accumulation of histone variant H3.3 in new cortical neurons establishes neuronal chromatin, transcriptome, and identity.; Proc Natl Acad Sci U S A, 119: e2116956119 |
|
GSE181331 |
| Funke, Benjamin et al. (2011) Selective downregulation of retinoic acid-inducible gene I within the intestinal epithelial compartment in Crohn's disease.; Inflamm Bowel Dis, 17: 1943-54 |
|
E-MEXP-2083 |
| Furge, Kyle A et al. (2007) Detection of DNA copy number changes and oncogenic signaling abnormalities from gene expression data reveals MYC activation in high-grade papillary renal cell carcinoma.; Cancer Res, 67: 3171-6 |
|
GSE7023 |
| Furihata, Chie et al. (2016) Collaborative studies in toxicogenomics in rodent liver in JEMS·MMS; a useful application of principal component analysis on toxicogenomics.; Genes Environ, 38: 15 |
|
GSE33248 |
| Furlow, J David et al. (2013) Altered gene expression patterns in muscle ring finger 1 null mice during denervation- and dexamethasone-induced muscle atrophy.; Physiol Genomics, 45: 1168-85 |
|
GSE44208 GSE44205 |
| Furman, Craig et al. (2022) Covalent ERα Antagonist H3B-6545 Demonstrates Encouraging Preclinical Activity in Therapy-Resistant Breast Cancer.; Mol Cancer Ther, 21: 890-902 |
|
GSE115608 GSE178303 |
| Furtado, Milena B et al. (2017) Point mutations in murineNkx2-5phenocopy human congenital heart disease and induce pathogenic Wnt signaling.; JCI Insight, 2: e88271 |
|
GSE85902 |
| Furth, Noa et al. (2015) Down-regulation of LATS kinases alters p53 to promote cell migration.; Genes Dev, 29: 2325-30 |
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GSE74493 |
| Furth, Noa et al. (2025) Oncogenic IDH1mutdrives robust loss of histone acetylation and increases chromatin heterogeneity.; Proc Natl Acad Sci U S A, 122: e2403862122 |
|
GSE238105 |
| Furth-Lavi, Judith et al. (2022) Glycemic control releases regenerative potential of pancreatic beta cells blocked by severe hyperglycemia.; Cell Rep, 41: 111719 |
|
GSE212749 |
| Furumai, Ryohei et al. (2019) UBE3A regulates the transcription of IRF, an antiviral immunity.; Hum Mol Genet, 28: 1947-1958 |
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GSE119415 |
| Furuse, Tamio et al. (2017) Protein-restricted diet during pregnancy after insemination alters behavioral phenotypes of the progeny.; Genes Nutr, 12: 1 |
|
GSE79847 |
| Furuya, Shigeki et al. (2008) Inactivation of the 3-phosphoglycerate dehydrogenase gene in mice: changes in gene expression and associated regulatory networks resulting from serine deficiency.; Funct Integr Genomics, 8: 235-49 |
|
GSE8555 |
| Fury, Wen et al. (2010) Transcript abundance patterns in Kawasaki disease patients with intravenous immunoglobulin resistance.; Hum Immunol, 71: 865-73 |
|
GSE18606 |
| Fusakio, Michael E et al. (2016) Transcription factor ATF4 directs basal and stress-induced gene expression in the unfolded protein response and cholesterol metabolism in the liver.; Mol Biol Cell, 27: 1536-51 |
|
GSE76771 |
| Fushan, Alexey A et al. (2015) Gene expression defines natural changes in mammalian lifespan.; Aging Cell, 14: 352-65 |
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GSE43013.12 GSE43013.15 |
| Fushimi, Atsushi et al. (2022) Dependence on the MUC1-C Oncoprotein in Classic, Variant, and Non-neuroendocrine Small Cell Lung Cancer.; Mol Cancer Res, 20: 1379-1390 |
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GSE192475 GSE159801 |
| Futatsusako, Hiroki et al. (2026) Modeling human enterovirus A71 infection using an intestinal microphysiological system.; J Virol, 100: e0025026 |
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GSE310224 |
| Gabel, Harrison W et al. (2015) Disruption of DNA-methylation-dependent long gene repression in Rett syndrome.; Nature, 522: 89-93 |
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GSE67294 GSE60074 GSE60070 |
| Gabel, Sebastien et al. (2016) Inflammation Promotes a Conversion of Astrocytes into Neural Progenitor Cells via NF-κB Activation.; Mol Neurobiol, 53: 5041-55 |
|
GSE73022 |
| Gabere, Musa Nur et al. (2016) Filtered selection coupled with support vector machines generate a functionally relevant prediction model for colorectal cancer.; Onco Targets Ther, 9: 3313-25 |
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GSE77434 |
| Gabitto, Mariano I et al. (2024) Integrated multimodal cell atlas of Alzheimer's disease.; Nat Neurosci, 27: 2366-2383 |
|
SEA-AD-DLPFC-2024 |