List of all 21,931 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Haag, Simone M et al. (2024) Systematic perturbation screens identify regulators of inflammatory macrophage states and a role for TNF mRNA m6A modification.; Nat Genet, 56: 2493-2505 |
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GSE268351 GSE268352 |
| Haage, Verena et al. (2019) Comprehensive gene expression meta-analysis identifies signature genes that distinguish microglia from peripheral monocytes/macrophages in health and glioma.; Acta Neuropathol Commun, 7: 20 |
|
GSE65868 |
| Haagsma, Jacob et al. (2023) Gain-of-function p53R175Hblocks apoptosis in a precursor model of ovarian high-grade serous carcinoma.; Sci Rep, 13: 11424 |
|
GSE227681 |
| Haakensen, Vilde D et al. (2010) Expression levels of uridine 5'-diphospho-glucuronosyltransferase genes in breast tissue from healthy women are associated with mammographic density.; Breast Cancer Res, 12: R65 |
|
GSE18672 |
| Haaning, Allison M et al. (2025) RNA Sequencing Reveals Inflammatory and Metabolic Changes in the Lung and Brain After Carbon Black and Naphthalene Whole Body Inhalation Exposure in a Rodent Model of Military Burn Pit Exposures.; Int J Mol Sci, 26: [no pages] |
|
GSE281993 |
| Haapa-Paananen, S et al. (2012) HES6 gene is selectively overexpressed in glioma and represents an important transcriptional regulator of glioma proliferation.; Oncogene, [no vol.]: [no pages] |
|
GSE22692.1 GSE22692.2 |
| Haas, Blake E et al. (2011) Evidence of how rs7575840 influences apolipoprotein B-containing lipid particles.; Arterioscler Thromb Vasc Biol, 31: 1201-7 |
|
GSE27666 |
| Haas, Eva et al. (2022) A Novel SCA3 Knock-in Mouse Model Mimics the Human SCA3 Disease Phenotype Including Neuropathological, Behavioral, and Transcriptional Abnormalities Especially in Oligodendrocytes.; Mol Neurobiol, 59: 495-522 |
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GSE145613 |
| Haas, Simon et al. (2015) Inflammation-Induced Emergency Megakaryopoiesis Driven by Hematopoietic Stem Cell-like Megakaryocyte Progenitors.; Cell Stem Cell, 17: 422-34 |
|
GSE64002 |
| Habbit, Nicole L et al. (2023) Ratiometric Inclusion of Fibroblasts Promotes Both Castration-Resistant and Androgen-Dependent Tumorigenic Progression in Engineered Prostate Cancer Tissues.; Adv Healthc Mater, 12: e2301139 |
|
GSE239593 |
| Haberman, Rebecca P et al. (2008) Rapid encoding of new information alters the profile of plasticity-related mRNA transcripts in the hippocampal CA3 region.; Proc Natl Acad Sci U S A, 105: 10601-6 |
|
GSE11475 GSE11474 GSE11473 |
| Haberman, Rebecca P et al. (2011) Prominent hippocampal CA3 gene expression profile in neurocognitive aging.; Neurobiol Aging, 32: 1678-92 |
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GSE14723 GSE14725 GSE14724 |
| Haberman, Rebecca P et al. (2013) Behaviorally activated mRNA expression profiles produce signatures of learning and enhanced inhibition in aged rats with preserved memory.; PLoS One, 8: e83674 |
|
GSE47867 |
| Haberman, Yael et al. (2014) Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature.; J Clin Invest, 124: 3617-33 |
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GSE57945 |
| Habermehl, Daniel et al. (2011) Glucocorticoid activity during lung maturation is essential in mesenchymal and less in alveolar epithelial cells.; Mol Endocrinol, 25: 1280-8 |
|
GSE30143 |
| Habich, Carina et al. (2025) BMP, MEK, and WNT inhibition with NGN2 expression for rapid generation of hiPSC-derived neurons amenable to regional patterning.; Stem Cell Reports, 20: 102539 |
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GSE279590 GSE253509 GSE253508.1 GSE253508.2 |
| Hachem, Laureen D et al. (2023) Excitotoxic glutamate levels drive spinal cord ependymal stem cell proliferation and fate specification through CP-AMPAR signaling.; Stem Cell Reports, 18: 672-687 |
|
GSE220988 |
| Hachigian, Lea J et al. (2017) Control of Huntington's Disease-Associated Phenotypes by the Striatum-Enriched Transcription Factor Foxp2.; Cell Rep, 21: 2688-2695 |
|
GSE104990 |
| Hacisuleyman, Ezgi et al. (2014) Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre.; Nat Struct Mol Biol, 21: 198-206 |
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GSE45157.1 GSE45157.2 |
| Hacisuleyman, Ezgi et al. (2024) Neuronal activity rapidly reprograms dendritic translation via eIF4G2:uORF binding.; Nat Neurosci, [no vol.]: [no pages] |
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GSE213012 |
| Hackett, Christopher S et al. (2014) Expression quantitative trait loci and receptor pharmacology implicate Arg1 and the GABA-A receptor as therapeutic targets in neuroblastoma.; Cell Rep, 9: 1034-46 |
|
GSE59675 |
| Hackett, Neil R et al. (2011) The human airway epithelial basal cell transcriptome.; PLoS One, 6: e18378 |
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GSE24337 |
| Hackett, Neil R et al. (2012) RNA-Seq quantification of the human small airway epithelium transcriptome.; BMC Genomics, 13: 82 |
|
GSE27681 |
| Hackney, Jennifer F et al. (2024) Rexinoids Induce Differential Gene Expression in Human Glioblastoma Cells and Protein-Protein Interactions in a Yeast Two-Hybrid System.; ACS Chem Neurosci, 15: 2897-2915 |
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GSE270465 |
| Haddad Derafshi, Bahareh et al. (2022) The autism risk factor CHD8 is a chromatin activator in human neurons and functionally dependent on the ERK-MAPK pathway effector ELK1.; Sci Rep, 12: 22425 |
|
GSE141085 |
| Haddad-Tóvolli, Roberta et al. (2020) Pro-opiomelanocortin (POMC) neuron translatome signatures underlying obesogenic gestational malprogramming in mice.; Mol Metab, 36: 100963 |
|
GSE135639 |
| Hadwen, Jeremiah et al. (2018) Transcriptomic RNAseq drug screen in cerebrocortical cultures: toward novel neurogenetic disease therapies.; Hum Mol Genet, 27: 3206-3217 |
|
GSE110256 |
| Hadzega, Dominik et al. (2021) Uncovering Microbial Composition in Human Breast Cancer Primary Tumour Tissue Using Transcriptomic RNA-seq.; Int J Mol Sci, 22: [no pages] |
|
GSE205185 |
| Hadziahmetovic, Majda et al. (2012) Microarray analysis of murine retinal light damage reveals changes in iron regulatory, complement, and antioxidant genes in the neurosensory retina and isolated RPE.; Invest Ophthalmol Vis Sci, 53: 5231-41 |
|
GSE37773 |
| Hadziselimovic, F et al. (2011) Testicular gene expression in cryptorchid boys at risk of azoospermia.; Sex Dev, 5: 49-59 |
|
GSE25518 |
| Haenseler, Walther et al. (2017) A Highly Efficient Human Pluripotent Stem Cell Microglia Model Displays a Neuronal-Co-culture-Specific Expression Profile and Inflammatory Response.; Stem Cell Reports, 8: 1727-1742 |
|
GSE89795 |
| Haenseler, Walther et al. (2017) Excess ?-synuclein compromises phagocytosis in iPSC-derived macrophages.; Sci Rep, 7: 9003 |
|
GSE89883 |
| Haering, Claudia et al. (2015) Ion transporter NKCC1, modulator of neurogenesis in murine olfactory neurons.; J Biol Chem, 290: 9767-79 |
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GSE65388 |
| Haferlach, Claudia et al. (2009) AML with mutated NPM1 carrying a normal or aberrant karyotype show overlapping biologic, pathologic, immunophenotypic, and prognostic features.; Blood, 114: 3024-32 |
|
GSE16015 |
| Hafez, Alexander K et al. (2022) A bidirectional competitive interaction between circHomer1 and Homer1b within the orbitofrontal cortex regulates reversal learning.; Cell Rep, 38: 110282 |
|
GSE160874 |
| Hafler, Brian P et al. (2012) Transcription factor Olig2 defines subpopulations of retinal progenitor cells biased toward specific cell fates.; Proc Natl Acad Sci U S A, 109: 7882-7 |
|
GSE37207.1 |
| Hafner, Mateja et al. (2011) The human primary hepatocyte transcriptome reveals novel insights into atorvastatin and rosuvastatin action.; Pharmacogenet Genomics, 21: 741-50 |
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GSE24187 |
| Haga, Naomi et al. (2010) Mitochondria regulate the unfolded protein response leading to cancer cell survival under glucose deprivation conditions.; Cancer Sci, 101: 1125-32 |
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GSE16157 |
| Hagedorn, Peter H et al. (2017) Managing the sequence-specificity of antisense oligonucleotides in drug discovery.; Nucleic Acids Res, 45: 2262-2282 |
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GSE93185 |
| Hagelkruys, Astrid et al. (2022) The HUSH complex controls brain architecture and protocadherin fidelity.; Sci Adv, 8: eabo7247 |
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GSE185329 GSE185328 |
| Hageman, Rachael S et al. (2010) High-fat diet leads to tissue-specific changes reflecting risk factors for diseases in DBA/2J mice.; Physiol Genomics, 42: 55-66 |
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GSE15822 |
| Hagemann, Tracy L et al. (2005) Gene expression analysis in mice with elevated glial fibrillary acidic protein and Rosenthal fibers reveals a stress response followed by glial activation and neuronal dysfunction.; Hum Mol Genet, 14: 2443-58 |
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GSE977 |
| Hagemeyer, Nora et al. (2017) Microglia contribute to normal myelinogenesis and to oligodendrocyte progenitor maintenance during adulthood.; Acta Neuropathol, 134: 441-458 |
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GSE96623 |
| Hagenauer, Megan Hastings et al. (2018) Inference of cell type content from human brain transcriptomic datasets illuminates the effects of age, manner of death, dissection, and psychiatric diagnosis.; PLoS One, 13: e0200003 |
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GSE92538.2 GSE92538.1 |
| Haghani, Amin et al. (2020) Adult mouse hippocampal transcriptome changes associated with long-term behavioral and metabolic effects of gestational air pollution toxicity.; Transl Psychiatry, 10: 218 |
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GSE147842 |
| Haghani, Amin et al. (2020) Mouse brain transcriptome responses to inhaled nanoparticulate matter differed by sex andAPOEinNrf2-Nfkbinteractions.; Elife, 9: [no pages] |
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GSE142066 |
| Haghani, Amin et al. (2021) Cerebral cortex and blood transcriptome changes in mouse neonates prenatally exposed to air pollution particulate matter.; J Neurodev Disord, 13: 30 |
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GSE142453 |
| Hagihara, Hideo et al. (2016) Circadian Gene Circuitry Predicts Hyperactive Behavior in a Mood Disorder Mouse Model.; Cell Rep, 14: 2784-96 |
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GSE68293 |
| Hagihara, Hideo et al. (2019) Transcriptomic evidence for immaturity induced by antidepressant fluoxetine in the hippocampus and prefrontal cortex.; Neuropsychopharmacol Rep, 39: 78-89 |
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GSE118670 GSE118724 |
| Hagihara, Hideo et al. (2022) Forebrain-specific conditional calcineurin deficiency induces dentate gyrus immaturity and hyper-dopaminergic signaling in mice.; Mol Brain, 15: 94 |
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GSE175896 |
| Haglund, Felix et al. (2012) Evidence of a functional estrogen receptor in parathyroid adenomas.; J Clin Endocrinol Metab, 97: 4631-9 |
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GSE37211 |
| Hagner, Patrick R et al. (2015) CC-122, a pleiotropic pathway modifier, mimics an interferon response and has antitumor activity in DLBCL.; Blood, 126: 779-89 |
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GSE75420 |
| Hagner, Patrick R et al. (2022) Interactome of Aiolos/Ikaros Reveals Combination Rationale of Cereblon Modulators with HDAC Inhibitors in DLBCL.; Clin Cancer Res, 28: 3367-3377 |
|
GSE201324 |
| Hahn, Anne et al. (2020) DNA Methyltransferase 1 (DNMT1) Function Is Implicated in the Age-Related Loss of Cortical Interneurons.; Front Cell Dev Biol, 8: 639 |
|
GSE154506 |
| Hahn, Jennifer M et al. (2013) Keloid-derived keratinocytes exhibit an abnormal gene expression profile consistent with a distinct causal role in keloid pathology.; Wound Repair Regen, 21: 530-44 |
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GSE44270 |
| Hahn, Oliver et al. (2023) Atlas of the aging mouse brain reveals white matter as vulnerable foci.; Cell, [no vol.]: [no pages] |
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GSE212576.1 GSE227515 GSE227689.2 GSE227689.1 |
| Haider, Madiha et al. (2021) Transcriptome analysis and connectivity mapping of Cissampelos pareira L. provides molecular links of ESR1 modulation to viral inhibition.; Sci Rep, 11: 20095 |
|
GSE156445 |
| Haider, Severin et al. (2025) Multi-level expression profiling of cardiac and musculoskeletal Schwann cells in young and old mice.; J Mol Cell Cardiol, 209: 51-65 |
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GSE282368 |
| Haigh, Jessica L et al. (2021) Deletion of a non-canonical regulatory sequence causes loss of Scn1a expression and epileptic phenotypes in mice.; Genome Med, 13: 69 |
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GSE169485 GSE169481 |
| Hailfinger, Stephan et al. (2009) Essential role of MALT1 protease activity in activated B cell-like diffuse large B-cell lymphoma.; Proc Natl Acad Sci U S A, 106: 19946-51 |
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GSE41034 |
| Haimon, Zhana et al. (2018) Re-evaluating microglia expression profiles using RiboTag and cell isolation strategies.; Nat Immunol, 19: 636-644 |
|
GSE114001 |
| Haimovich, Beatrice et al. (2010) A novel model of common Toll-like receptor 4- and injury-induced transcriptional themes in human leukocytes.; Crit Care, 14: R177 |
|
GSE22278 |
| Haines, Jeffery D et al. (2015) Multiple sclerosis patient-derived CSF induces transcriptional changes in proliferating oligodendrocyte progenitors.; Mult Scler, 21: 1655-69 |
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GSE60881 |
| Haines, Jeffery D et al. (2015) p38 Mitogen-Activated Protein Kinase Pathway Regulates Genes during Proliferation and Differentiation in Oligodendrocytes.; PLoS One, 10: e0145843 |
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GSE25670 |
| Hains, Anastasia E et al. (2024) Multi-omics approaches reveal that diffuse midline gliomas present altered DNA replication and are susceptible to replication stress therapy.; Genome Biol, 25: 319 |
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GSE268776 |
| Hait, Nitai C et al. (2014) Active, phosphorylated fingolimod inhibits histone deacetylases and facilitates fear extinction memory.; Nat Neurosci, 17: 971-80 |
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GSE57015 |
| Hakim, Ramil et al. (2019) Mesenchymal stem cells transplanted into spinal cord injury adopt immune cell-like characteristics.; Stem Cell Res Ther, 10: 115 |
|
GSE125176 |
| Hakim, Ramil et al. (2019) Syngeneic, in contrast to allogeneic, mesenchymal stem cells have superior therapeutic potential following spinal cord injury.; J Neuroimmunol, 328: 5-19 |
|
GSE139227 |
| Hakvoort, Theodorus B M et al. (2011) Interorgan coordination of the murine adaptive response to fasting.; J Biol Chem, 286: 16332-43 |
|
GSE24504 |
| Halappanavar, Sabina et al. (2009) Induction of the interleukin 6/ signal transducer and activator of transcription pathway in the lungs of mice sub-chronically exposed to mainstream tobacco smoke.; BMC Med Genomics, 2: 56 |
|
GSE12930 |
| Halawani, Dalia et al. (2023) Circadian clock regulator Bmal1 gates axon regeneration via Tet3 epigenetics in mouse sensory neurons.; Nat Commun, 14: 5165 |
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GSE233367 |
| Halawani, Dalia et al. (2026) AhR inhibition promotes axon regeneration via a stress-growth switch.; Nature, 653: 1119-1129 |
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GSE307639 |
| Haldar, Malay et al. (2014) Heme-mediated SPI-C induction promotes monocyte differentiation into iron-recycling macrophages.; Cell, 156: 1223-1234 |
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GSE53796 |
| Halder, Rashi et al. (2016) DNA methylation changes in plasticity genes accompany the formation and maintenance of memory.; Nat Neurosci, 19: 102-10 |
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GSE74966 |
| Hale, Caryn R et al. (2021) FMRP regulates mRNAs encoding distinct functions in the cell body and dendrites of CA1 pyramidal neurons.; Elife, 10: [no pages] |
|
GSE174303 |
| Hale, J Scott et al. (2013) Distinct memory CD4+ T cells with commitment to T follicular helper- and T helper 1-cell lineages are generated after acute viral infection.; Immunity, 38: 805-17 |
|
GSE43863 |
| Halevy, Tomer et al. (2016) Molecular Characterization of Down Syndrome Embryonic Stem Cells Reveals a Role for RUNX1 in Neural Differentiation.; Stem Cell Reports, 7: 777-786 |
|
GSE84887.1 |
| Haley, Sheila A et al. (2024) JCPyV infection of primary choroid plexus epithelial cells reduces expression of critical junctional proteins and increases expression of barrier disrupting inflammatory cytokines.; Microbiol Spectr, 12: e0062824 |
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GSE264236 |
| Häbig, Karina et al. (2009) Microarray expression analysis of human dopaminergic neuroblastoma cells after RNA interference of SNCA--a key player in the pathogenesis of Parkinson's disease.; Brain Res, 1256: 19-33 |
|
GSE9807 |
| Häfner, Sophia J et al. (2023) Ribosomal RNA 2'-O-methylation dynamics impact cell fate decisions.; Dev Cell, [no vol.]: [no pages] |
|
GSE199387 |
| Häger, Mattias et al. (2008) Cib2 binds integrin alpha7Bbeta1D and is reduced in laminin alpha2 chain-deficient muscular dystrophy.; J Biol Chem, 283: 24760-9 |
|
GSE12049 |
| Hägg, Daniel A et al. (2008) Expression profiling of macrophages from subjects with atherosclerosis to identify novel susceptibility genes.; Int J Mol Med, 21: 697-704 |
|
GSE9874 |
| Hägg, Sara et al. (2009) Multi-organ expression profiling uncovers a gene module in coronary artery disease involving transendothelial migration of leukocytes and LIM domain binding 2: the Stockholm Atherosclerosis Gene Expression (STAGE) study.; PLoS Genet, 5: e1000754 |
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GSE40231 |