List of all 21,933 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Harris, P et al. (2013) Double-stranded RNA induces molecular and inflammatory signatures that are directly relevant to COPD.; Mucosal Immunol, 6: 474-84 |
|
GSE39304 |
| Harris, Rayna M et al. (2019) Hippocampal transcriptomic responses to enzyme-mediated cellular dissociation.; Hippocampus, 29: 876-882 |
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GSE106595 GSE99765 |
| Harrison, Benjamin J et al. (2015) Transcriptional changes in sensory ganglia associated with primary afferent axon collateral sprouting in spared dermatome model.; Genom Data, 6: 249-52 |
|
GSE72551 |
| Harrod, A et al. (2017) Genomic modelling of the ESR1 Y537S mutation for evaluating function and new therapeutic approaches for metastatic breast cancer.; Oncogene, 36: 2286-2296 |
|
GSE78285 |
| Harrow, Jennifer et al. (2006) GENCODE: producing a reference annotation for ENCODE.; Genome Biol, 7 Suppl 1: S4.1-9 |
|
GSE30619 |
| Hart, Jonathan R et al. (2015) The butterfly effect in cancer: a single base mutation can remodel the cell.; Proc Natl Acad Sci U S A, 112: 1131-6 |
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GSE63452 |
| Hart, Ronald P et al. (2016) Long noncoding RNAs: Central to nervous system development.; Int J Dev Neurosci, 55: 109-116 |
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GSE77647 |
| Hartig, Sean M et al. (2012) Feed-forward inhibition of androgen receptor activity by glucocorticoid action in human adipocytes.; Chem Biol, 19: 1126-41 |
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GSE39342 |
| Hartl, Daniela et al. (2008) Transcriptome and proteome analysis of early embryonic mouse brain development.; Proteomics, 8: 1257-65 |
|
GSE8091 |
| Hartl, Dominik et al. (2017) Cis-regulatory landscapes of four cell types of the retina.; Nucleic Acids Res, 45: 11607-11621 |
|
GSE84589.1 |
| Hartley, Rachel et al. (2024) MYC Promotes Aggressive Growth and Metastasis of a WNT-Medulloblastoma Mouse Model.; Dev Neurosci, 46: 167-178 |
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GSE227631 |
| Hartley, Stephen W et al. (2015) Neurotranscriptomics: The Effects of Neonatal Stimulus Deprivation on the Rat Pineal Transcriptome.; PLoS One, 10: e0137548 |
|
GSE63309 |
| Hartman, Zachary C et al. (2007) Adenoviral infection induces a multi-faceted innate cellular immune response that is mediated by the toll-like receptor pathway in A549 cells.; Virology, 358: 357-72 |
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GSE3172 |
| Hartman, Zachary C et al. (2007) Adenovirus infection triggers a rapid, MyD88-regulated transcriptome response critical to acute-phase and adaptive immune responses in vivo.; J Virol, 81: 1796-812 |
|
GSE4339 |
| Hartmann, Boris M et al. (2014) Combinatorial cytokine code generates anti-viral state in dendritic cells.; Front Immunol, 5: 73 |
|
GSE52081 |
| Hartmann, Elena M et al. (2010) Pathway discovery in mantle cell lymphoma by integrated analysis of high-resolution gene expression and copy number profiling.; Blood, 116: 953-61 |
|
GSE21452 |
| Hartmann, Sylvia et al. (2013) Macrophages in T cell/histiocyte rich large B cell lymphoma strongly express metal-binding proteins and show a bi-activated phenotype.; Int J Cancer, 133: 2609-18 |
|
GSE42495 |
| Hartmann, Sylvia et al. (2013) Nodular lymphocyte predominant hodgkin lymphoma and T cell/histiocyte rich large B cell lymphoma--endpoints of a spectrum of one disease?; PLoS One, 8: e78812 |
|
GSE47044 |
| Hartong, Dyonne T et al. (2008) Insights from retinitis pigmentosa into the roles of isocitrate dehydrogenases in the Krebs cycle.; Nat Genet, 40: 1230-4 |
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GSE12086 |
| Harvell, Djuana M E et al. (2013) Genomic signatures of pregnancy-associated breast cancer epithelia and stroma and their regulation by estrogens and progesterone.; Horm Cancer, 4: 140-53 |
|
GSE31192 |
| Harvey, Craig N et al. (2009) Effect of the methoxychlor metabolite HPTE on the rat ovarian granulosa cell transcriptome in vitro.; Toxicol Sci, 110: 95-106 |
|
GSE13883 |
| Harvey, Tracey J et al. (2021) Genome-wide transcriptomic analysis of the forebrain of postnatal Slc13a4+/-mice.; BMC Res Notes, 14: 269 |
|
GSE171765 |
| Hasan, Sibah et al. (2014) A human sleep homeostasis phenotype in mice expressing a primate-specific PER3 variable-number tandem-repeat coding-region polymorphism.; FASEB J, 28: 2441-54 |
|
GSE55494 GSE55495 |
| Hascher, Antje et al. (2013) DNA Methyltransferase inhibition reverses epigenetically embedded phenotypes in lung cancer preferentially affecting Polycomb target genes.; Clin Cancer Res, [no vol.]: [no pages] |
|
GSE52143 |
| Hasegawa, Kazuteru et al. (2012) Retinoic acid signaling in Sertoli cells regulates organization of the blood-testis barrier through cyclical changes in gene expression.; Development, 139: 4347-55 |
|
GSE34758 |
| Hasegawa, Koichi et al. (2016) Promotion of mitochondrial biogenesis by necdin protects neurons against mitochondrial insults.; Nat Commun, 7: 10943 |
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GSE63498 |
| Hasegawa, Ryota et al. (2013) Identification of ZNF395 as a novel modulator of adipogenesis.; Exp Cell Res, 319: 68-76 |
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GSE37836 |
| Hasegawa, Yoshiaki et al. (2007) Gingival epithelial cell transcriptional responses to commensal and opportunistic oral microbial species.; Infect Immun, 75: 2540-7 |
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GSE6927 |
| Hasegawa, Yuto et al. (2023) Microglial cannabinoid receptor type 1 mediates social memory deficits in mice produced by adolescent THC exposure and 16p11.2 duplication.; Nat Commun, 14: 6559 |
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GSE242892 |
| Hasel, Philip et al. (2021) Neuroinflammatory astrocyte subtypes in the mouse brain.; Nat Neurosci, 24: 1475-1487 |
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GSE148610 GSE165069 |
| Hasenbein, Tim P et al. (2024) X-linked deletion of Crossfirre, Firre, and Dxz4 in vivo uncovers diverse phenotypes and combinatorial effects on autosomes.; Nat Commun, 15: 10631 |
|
GSE219160 |
| Hashikawa, Koichi et al. (2017) Esr1+cells in the ventromedial hypothalamus control female aggression.; Nat Neurosci, 20: 1580-1590 |
|
GSE103183 |
| Hashimoto, J G et al. (2011) Importance of genetic background for risk of relapse shown in altered prefrontal cortex gene expression during abstinence following chronic alcohol intoxication.; Neuroscience, 173: 57-75 |
|
GSE23165 |
| Hashimoto, Joel G et al. (2023) Ethanol-induced transcriptional and translational changes in Aldh1l1-Egfp/Rpl10a cortical astrocyte cultures.; Front Neurosci, 17: 1193304 |
|
GSE227891 |
| Hashimoto, Joel G et al. (2025) Alcohol dependence-induced astrocyte immune activation in the nucleus accumbens.; Neurobiol Dis, 217: 107171 |
|
GSE308880 |
| Hashimoto, Kosuke et al. (2015) CAGE profiling of ncRNAs in hepatocellular carcinoma reveals widespread activation of retroviral LTR promoters in virus-induced tumors.; Genome Res, 25: 1812-24 |
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GSE60982 |
| Hashimoto, Michihiro et al. (2021) Autophagy is dispensable for the maintenance of hematopoietic stem cells in neonates.; Blood Adv, 5: 1594-1604 |
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GSE166911 |
| Hashimoto, Misuzu et al. (2021) Loss of PRMT1 in the central nervous system (CNS) induces reactive astrocytes and microglia during postnatal brain development.; J Neurochem, 156: 834-847 |
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GSE126127 |
| Hashimoto, Misuzu et al. (2025) Neural stem cell-specific deficiency of (pro)renin receptor causes brain malformation and perinatal lethality in mice.; J Biochem, 178: 355-367 |
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GSE286550 |
| Hashimoto-Torii, Kazue et al. (2011) Combined transcriptome analysis of fetal human and mouse cerebral cortex exposed to alcohol.; Proc Natl Acad Sci U S A, 108: 4212-7 |
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GSE23579.1 GSE23579.2 |
| Hasin-Brumshtein, Yehudit et al. (2016) Hypothalamic transcriptomes of 99 mouse strains reveal trans eQTL hotspots, splicing QTLs and novel non-coding genes.; Elife, 5: [no pages] |
|
GSE79551 |
| Haskell, Angela K et al. (2026) Generation and characterization of iPSC-derived microglia for in vitro modeling of stimuli-specific neuroimmune responses.; Alzheimers Dement, 22: e71117 |
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GSE306820 |
| Haslett, Judith N et al. (2002) Gene expression comparison of biopsies from Duchenne muscular dystrophy (DMD) and normal skeletal muscle.; Proc Natl Acad Sci U S A, 99: 15000-5 |
|
GSE1004 |
| Haslett, Judith N et al. (2005) The influence of muscle type and dystrophin deficiency on murine expression profiles.; Mamm Genome, 16: 739-48 |
|
GSE897 |
| Haslinger, Christian et al. (2004) Microarray gene expression profiling of B-cell chronic lymphocytic leukemia subgroups defined by genomic aberrations and VH mutation status.; J Clin Oncol, 22: 3937-49 |
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GSE2466 |
| Haslinger, Denise et al. (2018) Loss of the Chr16p11.2 ASD candidate geneQPRTleads to aberrant neuronal differentiation in the SH-SY5Y neuronal cell model.; Mol Autism, 9: 56 |
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GSE113734 |
| Hasna, Jessy et al. (2019) Zinc Uptake and Storage During the Formation of the Cerebral Cortex in Mice.; Mol Neurobiol, 56: 6928-6940 |
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GSE154677 |
| Hassan, Musa A et al. (2014) The genetic basis for individual differences in mRNA splicing and APOBEC1 editing activity in murine macrophages.; Genome Res, 24: 377-89 |
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GSE47540 |
| Hassan, Musa A et al. (2015) Transcriptional and Linkage Analyses Identify Loci that Mediate the Differential Macrophage Response to Inflammatory Stimuli and Infection.; PLoS Genet, 11: e1005619 |
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GSE47046 |
| Hassane, Duane C et al. (2008) Discovery of agents that eradicate leukemia stem cells using an in silico screen of public gene expression data.; Blood, 111: 5654-62 |
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GSE7538 |
| Hassannia, Behrouz et al. (2018) Nano-targeted induction of dual ferroptotic mechanisms eradicates high-risk neuroblastoma.; J Clin Invest, 128: 3341-3355 |
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GSE112384 |
| Hassel, Bjørnar et al. (2010) Region-specific changes in gene expression in rat brain after chronic treatment with levetiracetam or phenytoin.; Epilepsia, 51: 1714-20 |
|
GSE2880 |
| Hassel, Lisa A et al. (2023) Differential activity of transcription factor Sox9 in early and adult oligodendroglial progenitor cells.; Glia, 71: 1890-1905 |
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GSE220604 |
| Hasselblatt, Martin et al. (2009) TWIST-1 is overexpressed in neoplastic choroid plexus epithelial cells and promotes proliferation and invasion.; Cancer Res, 69: 2219-23 |
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GSE14098 |
| Hassin, Ori et al. (2022) Different hotspot p53 mutants exert distinct phenotypes and predict outcome of colorectal cancer patients.; Nat Commun, 13: 2800 |
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GSE173364.1 GSE173364.2 |
| Hassin, Ori et al. (2023) p53 deficient breast cancer cells reprogram preadipocytes toward tumor-protective immunomodulatory cells.; Proc Natl Acad Sci U S A, 120: e2311460120 |
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GSE238230.2 GSE238230.1 GSE238231.2 |
| Hassoun, Heitham T et al. (2007) Ischemic acute kidney injury induces a distant organ functional and genomic response distinguishable from bilateral nephrectomy.; Am J Physiol Renal Physiol, 293: F30-40 |
|
GSE6730 |
| Hasstedt, Sandra J et al. (2009) Cell adhesion molecule 1: a novel risk factor for venous thrombosis.; Blood, 114: 3084-91 |
|
GSE17078 |
| Hastings, Robert Louis et al. (2023) Cellular and molecular evidence that synaptic Schwann cells contribute to aging of mouse neuromuscular junctions.; Aging Cell, 22: e13981 |
|
GSE222631 |
| Haston, C K et al. (2005) Murine candidate bleomycin induced pulmonary fibrosis susceptibility genes identified by gene expression and sequence analysis of linkage regions.; J Med Genet, 42: 464-73 |
|
GSE2640 |
| Haston, Christina K et al. (2006) Strain-dependent pulmonary gene expression profiles of a cystic fibrosis mouse model.; Physiol Genomics, 25: 336-45 |
|
GSE3100 |
| Hasuike, Yuhei et al. (2022) CAG repeat-binding small molecule improves motor coordination impairment in a mouse model of Dentatorubral-pallidoluysian atrophy.; Neurobiol Dis, 163: 105604 |
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GSE183652 |
| Hata, Aaron N et al. (2016) Tumor cells can follow distinct evolutionary paths to become resistant to epidermal growth factor receptor inhibition.; Nat Med, 22: 262-9 |
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GSE75602 |
| Hatanaka, Fumiyuki et al. (2024) Therapeutic strategy for spinal muscular atrophy by combining gene supplementation and genome editing.; Nat Commun, 15: 6191 |
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GSE207181 |
| Hatcher, Katherine M et al. (2023) The molecular phenotype of kisspeptin neurons in the medial amygdala of female mice.; Front Endocrinol (Lausanne), 14: 1093592 |
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GSE224788 |
| Hathcock, Karen S et al. (2015) ATM deficiency promotes development of murine B-cell lymphomas that resemble diffuse large B-cell lymphoma in humans.; Blood, 126: 2291-301 |
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GSE68505 |
| Hathcock, Sarah F et al. (2025) Transcriptomic analysis of coxsackievirus B3 infection in induced pluripotent stem cell-derived brain-like endothelial cells.; J Virol, 99: e0182424 |
|
GSE269413 |
| Hathy, Edit et al. (2020) Investigation of de novo mutations in a schizophrenia case-parent trio by induced pluripotent stem cell-based in vitro disease modeling: convergence of schizophrenia- and autism-related cellular phenotypes.; Stem Cell Res Ther, 11: 504 |
|
GSE145656 |
| Hatley, Mark E et al. (2012) A mouse model of rhabdomyosarcoma originating from the adipocyte lineage.; Cancer Cell, 22: 536-46 |
|
GSE40359 |
| Hatou, Shin et al. (2021) Transplantation of iPSC-derived corneal endothelial substitutes in a monkey corneal edema model.; Stem Cell Res, 55: 102497 |
|
GSE178434 |
| Hatterschide, Joshua et al. (2019) PTPN14 degradation by high-risk human papillomavirus E7 limits keratinocyte differentiation and contributes to HPV-mediated oncogenesis.; Proc Natl Acad Sci U S A, 116: 7033-7042 |
|
GSE121906 |
| Hattori, Etsuko Yamamoto et al. (2022) A RUNX-targeted gene switch-off approach modulates the BIRC5/PIF1-p21 pathway and reduces glioblastoma growth in mice.; Commun Biol, 5: 939 |
|
GSE174634 |
| Hattori, Tsuyoshi et al. (2023) Postnatal expression of CD38 in astrocytes regulates synapse formation and adult social memory.; EMBO J, 42: e111247 |
|
GSE216887 |
| Hattori, Yasuhiko et al. (2022) Combination of Ad-SGE-REIC and bevacizumab modulates glioma progression by suppressing tumor invasion and angiogenesis.; PLoS One, 17: e0273242 |
|
GSE205928 |
| Hattori, Yujiro et al. (2024) Transcriptomic Profiling of Lactotroph Pituitary Neuroendocrine Tumors via RNA Sequencing and Ingenuity Pathway Analysis.; Neuroendocrinology, 114: 670-680 |
|
GSE240781 |
| Hatzis, Christos et al. (2011) A genomic predictor of response and survival following taxane-anthracycline chemotherapy for invasive breast cancer.; JAMA, 305: 1873-81 |
|
GSE25065 |
| Hatzis, Christos et al. (2011) Effects of tissue handling on RNA integrity and microarray measurements from resected breast cancers.; J Natl Cancer Inst, 103: 1871-83 |
|
GSE25011 |
| Hau, Ann-Christin et al. (2017) MEIS homeodomain proteins facilitate PARP1/ARTD1-mediated eviction of histone H1.; J Cell Biol, 216: 2715-2729 |
|
GSE74314 |
| Hau, Ann-Christin et al. (2021) Transcriptional cooperation of PBX1 and PAX6 in adult neural progenitor cells.; Sci Rep, 11: 21013 |
|
GSE172449 |
| Haug, Stefan et al. (2024) Multi-omic analysis of human kidney tissue identified medulla-specific gene expression patterns.; Kidney Int, 105: 293-311 |
|
GSE212907 |
| Haugas, Maarja et al. (2016) Gata2 and Gata3 regulate the differentiation of serotonergic and glutamatergic neuron subtypes of the dorsal raphe.; Development, 143: 4495-4508 |
|
GSE89354 |
| Haugen, Astrid C et al. (2010) Altered gene expression and DNA damage in peripheral blood cells from Friedreich's ataxia patients: cellular model of pathology.; PLoS Genet, 6: e1000812 |
|
GSE11204 |
| Hauptmann, Judith et al. (2020) Interleukin-1 promotes autoimmune neuroinflammation by suppressing endothelial heme oxygenase-1 at the blood-brain barrier.; Acta Neuropathol, 140: 549-567 |
|
GSE146378 |
| Hauser, David N et al. (2014) Post-translational decrease in respiratory chain proteins in the Polg mutator mouse brain.; PLoS One, 9: e94646 |
|
GSE55188 |
| Hauser, David N et al. (2017) Hexokinases link DJ-1 to the PINK1/parkin pathway.; Mol Neurodegener, 12: 70 |
|
GSE71968 |
| Hauser, Rebecca M et al. (2026) Promoter mutagenesis and a massively parallel reporter screen of theMAPTlocus identifies cis-regulatory elements and genetic variation effects.; bioRxiv, [no vol.]: [no pages] |
|
GSE324430 |
| Hauser, Stefan et al. (2012) Isolation of novel multipotent neural crest-derived stem cells from adult human inferior turbinate.; Stem Cells Dev, 21: 742-56 |
|
GSE30596 |
| Hauser, Stefan et al. (2020) Comparative Transcriptional Profiling of Motor Neuron Disorder-Associated Genes in Various Human Cell Culture Models.; Front Cell Dev Biol, 8: 544043 |
|
GSE157185 |
| Hausmann, Fabian et al. (2024) A dataset profiling the multiomic landscape of the prefrontal cortex in amyotrophic lateral sclerosis.; Gigascience, 13: [no pages] |
|
GSE234245 |
| Hausser, Jean et al. (2009) Relative contribution of sequence and structure features to the mRNA binding of Argonaute/EIF2C-miRNA complexes and the degradation of miRNA targets.; Genome Res, 19: 2009-20 |
|
GSE14537 |
| Haustead, Daniel J et al. (2016) Transcriptome analysis of human ageing in male skin shows mid-life period of variability and central role of NF-κB.; Sci Rep, 6: 26846 |
|
GSE18876 |
| Havrylov, Serhiy et al. (2024) Pleiotropy in FOXC1-attributable phenotypes involves altered ciliation and cilia-dependent signaling.; Sci Rep, 14: 20278 |
|
GSE227703 |
| Häsler, Robert et al. (2009) Genetic control of global gene expression levels in the intestinal mucosa: a human twin study.; Physiol Genomics, 38: 73-9 |
|
GSE7821 |