List of all 21,933 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Handoko, Lusy et al. (2018) JQ1 affects BRD2-dependent and independent transcription regulation without disrupting H4-hyperacetylated chromatin states.; Epigenetics, 13: 410-431 |
|
GSE113711 |
| Haney, Staci L et al. (2017) Novel tropolones induce the unfolded protein response pathway and apoptosis in multiple myeloma cells.; Oncotarget, 8: 76085-76098 |
|
GSE93099 |
| Hani, Taisuke et al. (2024) Tissue-Targeted Transcriptomics Reveals SEMA3D Control of Hypoglossal Nerve Projection to Mouse Tongue Primordia.; Acta Histochem Cytochem, 57: 35-46 |
|
GSE249490 |
| Hanifi-Moghaddam, P et al. (2007) Molecular analysis of human endometrium: short-term tibolone signaling differs significantly from estrogen and estrogen + progestagen signaling.; J Mol Med (Berl), 85: 471-80 |
|
GSE12446 |
| Hanley, Olivia et al. (2016) Parallel Pbx-Dependent Pathways Govern the Coalescence and Fate of Motor Columns.; Neuron, 91: 1005-1020 |
|
GSE84271 |
| Hanna, Roy et al. (2021) G-quadruplexes originating from evolutionary conserved L1 elements interfere with neuronal gene expression in Alzheimer's disease.; Nat Commun, 12: 1828 |
|
GSE162873 |
| Hannah, Michele F et al. (2008) Sex differences in the recognition of and innate antiviral responses to Seoul virus in Norway rats.; Brain Behav Immun, 22: 503-16 |
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GSE7271 |
| Hannenhalli, Sridhar et al. (2006) Transcriptional genomics associates FOX transcription factors with human heart failure.; Circulation, 114: 1269-76 |
|
GSE5406 |
| Hanniford, Douglas et al. (2020) Epigenetic Silencing of CDR1as Drives IGF2BP3-Mediated Melanoma Invasion and Metastasis.; Cancer Cell, 37: 55-70.e15 |
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GSE138412.2 GSE138412.1 |
| Hanno, Yoko et al. (2026) Targeting notch signaling to restore neural development and behavior in mouse models of ASD.; Nat Commun, 17: [no pages] |
|
GSE293282 |
| Hanrath, Aidan T et al. (2022) Type I interferon receptor (IFNAR2) deficiency reveals Zika virus cytopathicity in human macrophages and microglia.; Front Immunol, 13: 1035532 |
|
GSE198542 |
| Hansakon, Adithap et al. (2023) Differential and cooperative effects of IL-25 and IL-33 on T helper cells contribute to cryptococcal virulence and brain infection.; Sci Rep, 13: 9895 |
|
GSE229703 |
| Hansakon, Adithap et al. (2024) Arginase inhibitor reduces fungal dissemination in murine pulmonary cryptococcosis by promoting anti-cryptococcal immunity.; Int Immunopharmacol, 132: 111995 |
|
GSE255160 |
| Hansen, Amy et al. (2010) KSHV-encoded miRNAs target MAF to induce endothelial cell reprogramming.; Genes Dev, 24: 195-205 |
|
GSE16356 GSE16355 GSE16354 |
| Hansen, Andi H et al. (2021) Tissue-Wide Effects Override Cell-Intrinsic Gene Function in Radial Neuron Migration.; Oxf Open Neurosci, 1: kvac009 |
|
GSE200604 |
| Hansen, Jakob Bondo et al. (2012) Divalent metal transporter 1 regulates iron-mediated ROS and pancreatic ? cell fate in response to cytokines.; Cell Metab, 16: 449-61 |
|
GSE40642 |
| Hansen, Jakob S et al. (2015) Type 2 diabetes alters metabolic and transcriptional signatures of glucose and amino acid metabolism during exercise and recovery.; Diabetologia, 58: 1845-54 |
|
GSE59363 |
| Hansen, Katelin F et al. (2014) Profiling status epilepticus-induced changes in hippocampal RNA expression using high-throughput RNA sequencing.; Sci Rep, 4: 6930 |
|
GSE72402 |
| Hansen, Katelin F et al. (2016) Targeted deletion of miR-132/-212 impairs memory and alters the hippocampal transcriptome.; Learn Mem, 23: 61-71 |
|
GSE73413 |
| Hansen, Lena et al. (2022) Endothelial Sphingosine-1-Phosphate Receptor 4 Regulates Blood-Brain Barrier Permeability and Promotes a Homeostatic Endothelial Phenotype.; J Neurosci, 42: 1908-1929 |
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GSE163561 |
| Hansen, Morten S et al. (2024) Transcriptional reprogramming during human osteoclast differentiation identifies regulators of osteoclast activity.; Bone Res, 12: 5 |
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GSE246769 |
| Hansen, R Scott et al. (2010) Sequencing newly replicated DNA reveals widespread plasticity in human replication timing.; Proc Natl Acad Sci U S A, 107: 139-44 |
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GSE19090 |
| Hansen, Signe Schmidt Kjølner et al. (2024) Pulmonary maternal immune activation does not cross the placenta but leads to fetal metabolic adaptation.; Nat Commun, 15: 4711 |
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GSE224116 |
| Hansen, Wiebke et al. (2007) Chronic antigen stimulation in vivo induces a distinct population of antigen-specific Foxp3 CD25 regulatory T cells.; J Immunol, 179: 8059-68 |
|
GSE12506 |
| Hanssen, Mark J W et al. (2015) Short-term cold acclimation improves insulin sensitivity in patients with type 2 diabetes mellitus.; Nat Med, 21: 863-5 |
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GSE67297 |
| Hanuscheck, Nicholas et al. (2022) Interleukin-4 receptor signaling modulates neuronal network activity.; J Exp Med, 219: [no pages] |
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GSE200555 GSE200569 |
| Hanzel, Michalina et al. (2024) Mice lackingAstn2have ASD-like behaviors and altered cerebellar circuit properties.; bioRxiv, [no vol.]: [no pages] |
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GSE254224 |
| Hao, Chunxiang et al. (2016) Exposure to the widely used herbicide atrazine results in deregulation of global tissue-specific RNA transcription in the third generation and is associated with a global decrease of histone trimethylation in mice.; Nucleic Acids Res, 44: 9784-9802 |
|
GSE81091 |
| Hao, Pengying et al. (2021) STAT5 Regulation of Sex-Dependent Hepatic CpG Methylation at Distal Regulatory Elements Mapping to Sex-Biased Genes.; Mol Cell Biol, 41: [no pages] |
|
GSE103885 |
| Hao, Yi-Heng et al. (2026) ARNT2 repression disrupts neuronal identity and promotes glioblastoma growth.; Cell Commun Signal, 24: [no pages] |
|
GSE236486 |
| Hao, Yujie et al. (2024) Autophagic flux modulates tumor heterogeneity and lineage plasticity in SCLC.; Front Oncol, 14: 1509183 |
|
GSE278238 GSE278235 |
| Hao, Zi-Jian et al. (2026) Anti-asthma drug montelukast induces autistic behaviors via disrupting neuronal retinoic acid signaling.; Signal Transduct Target Ther, 11: [no pages] |
|
GSE232669 |
| Hao, Zongbing et al. (2019) Motor dysfunction and neurodegeneration in a C9orf72 mouse line expressing poly-PR.; Nat Commun, 10: 2906 |
|
GSE132108 |
| Happonen, Kaisa E et al. (2023) Regulation of brain endothelial cell physiology by the TAM receptor tyrosine kinase Mer.; Commun Biol, 6: 916 |
|
GSE225474 |
| Haq, Rizwan et al. (2013) Oncogenic BRAF regulates oxidative metabolism via PGC1α and MITF.; Cancer Cell, 23: 302-15 |
|
GSE38007 |
| Haque, Manjurul et al. (2018) Differential expression of genes in fetal brain as a consequence of maternal protein deficiency and nematode infection.; Int J Parasitol, 48: 51-58 |
|
GSE96103 |
| Haque, Manjurul et al. (2019) Maternal Gastrointestinal Nematode Infection Up-regulates Expression of Genes Associated with Long-Term Potentiation in Perinatal Brains of Uninfected Developing Pups.; Sci Rep, 9: 4165 |
|
GSE118064 |
| Hara, Masato et al. (2023) Peripheral nerve-derived fibroblasts promote neurite outgrowth in adult dorsal root ganglion neurons more effectively than skin-derived fibroblasts.; Exp Physiol, 108: 621-635 |
|
GSE211427 |
| Hara, Shuichi et al. (2017) Gene expression in rat striatum following carbon monoxide poisoning.; Genom Data, 12: 74-75 |
|
GSE94780 |
| Hara, Tomoaki et al. (2024) Fat and proteolysis due to methionine, tryptophan, and niacin deficiency leads to alterations in gut microbiota and immune modulation in inflammatory bowel disease.; Cancer Sci, [no vol.]: [no pages] |
|
GSE239475 |
| Hara, Yukako et al. (2024) No-observed-adverse-effect-level (NOAEL) clothianidin, a neonicotinoid pesticide, impairs hippocampal memory and motor learning associated with alteration of gene expression in cerebellum.; J Vet Med Sci, 86: 340-348 |
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GSE251773 |
| Harada, Naoya et al. (2024) The splicing factor CCAR1 regulates the Fanconi anemia/BRCA pathway.; Mol Cell, 84: 2618-2633.e10 |
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GSE242781 |
| Harahap-Carrillo, Indira S et al. (2025) Chronic, Low-Dose Methamphetamine Reveals Sexual Dimorphism of Memory Performance, Histopathology, and Gene Expression Affected by HIV-1 Tat Protein in a Transgenic Model of NeuroHIV.; Viruses, 17: [no pages] |
|
GSE255016 |
| Haram, Kerstyn M et al. (2008) Gene expression profile of mouse prostate tumors reveals dysregulations in major biological processes and identifies potential murine targets for preclinical development of human prostate cancer therapy.; Prostate, 68: 1517-30 |
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GSE10525 |
| Harari, Ram et al. (2025) The psychedelic psilocybin and light exposure have similar and synergistic effects on gene expression patterns in the visual cortex.; Mol Brain, 18: 23 |
|
GSE285605 |
| Harati, K et al. (2012) TRAIL and taurolidine enhance the anticancer activity of doxorubicin, trabectedin and mafosfamide in HT1080 human fibrosarcoma cells.; Anticancer Res, 32: 2967-84 |
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GSE32441 |
| Harbour, Kyle et al. (2025) Early life stress modulates neonatal somatosensation and the transcriptional profile of immature sensory neurons.; Pain, 166: 888-901 |
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GSE272525 |
| Hardesty, Josiah E et al. (2023) Resolvin D1 attenuated liver injury caused by chronic ethanol and acute LPS challenge in mice.; FASEB J, 37: e22705 |
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GSE220520 |
| Harding, Alfred T et al. (2024) Human otic progenitor cell models of congenital hearing loss reveal potential pathophysiologic mechanisms of Zika virus and cytomegalovirus infections.; mBio, 15: e0019924 |
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GSE234062 |
| Harding, Alfred T et al. (2025) Human Brain Organoids: A New Model to StudyCryptococcus neoformansNeurotropism.; J Fungi (Basel), 11: [no pages] |
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GSE302166 |
| Harding, Pamela et al. (2010) Gene expression profiling of dilated cardiomyopathy in older male EP4 knockout mice.; Am J Physiol Heart Circ Physiol, 298: H623-32 |
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GSE16909 |
| Hardt, Olaf et al. (2008) Gene expression analysis defines differences between region-specific GABAergic neurons.; Mol Cell Neurosci, 39: 418-28 |
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GSE8984 |
| Hardwick, Simon A et al. (2019) Targeted, High-Resolution RNA Sequencing of Non-coding Genomic Regions Associated With Neuropsychiatric Functions.; Front Genet, 10: 309 |
|
GSE118158 |
| Hardy, Olga T et al. (2011) Body mass index-independent inflammation in omental adipose tissue associated with insulin resistance in morbid obesity.; Surg Obes Relat Dis, 7: 60-7 |
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GSE20950 |
| Harel, Itamar et al. (2012) Pharyngeal mesoderm regulatory network controls cardiac and head muscle morphogenesis.; Proc Natl Acad Sci U S A, 109: 18839-44 |
|
GSE42389 |
| Harel, Sivan et al. (2012) ZFX controls the self-renewal of human embryonic stem cells.; PLoS One, 7: e42302 |
|
GSE29784 |
| Haren, M T et al. (2011) Testosterone modulates gene expression pathways regulating nutrient accumulation, glucose metabolism and protein turnover in mouse skeletal muscle.; Int J Androl, 34: 55-68 |
|
GSE16486 |
| Harewood, Louise et al. (2010) The effect of translocation-induced nuclear reorganization on gene expression.; Genome Res, 20: 554-64 |
|
GSE13122 |
| Hargus, Gunnar et al. (2014) Origin-dependent neural cell identities in differentiated human iPSCs in vitro and after transplantation into the mouse brain.; Cell Rep, 8: 1697-1703 |
|
GSE55107 |
| Harhausen, Denise et al. (2010) CD93/AA4.1: a novel regulator of inflammation in murine focal cerebral ischemia.; J Immunol, 184: 6407-17 |
|
GSE21002 |
| Haribhai, Dipica et al. (2009) A central role for induced regulatory T cells in tolerance induction in experimental colitis.; J Immunol, 182: 3461-8 |
|
GSE14415 |
| Hariharan, Seethalakshmi et al. (2024) Interplay between ATRX and IDH1 mutations governs innate immune responses in diffuse gliomas.; Nat Commun, 15: 730 |
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GSE231831 GSE228242 GSE231830 GSE228181 GSE228243 |
| Harjuhaahto, Sandra et al. (2025) Dose-dependent CHCHD10 dysregulation dictates motor neuron disease severity and alters creatine metabolism.; Acta Neuropathol Commun, 13: 111 |
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GSE276449 |
| Harkin, Jade et al. (2024) A highly reproducible and efficient method for retinal organoid differentiation from human pluripotent stem cells.; Proc Natl Acad Sci U S A, 121: e2317285121 |
|
GSE254830 |
| Harland, Luke T G et al. (2021) The T-box transcription factor Eomesodermin governs haemogenic competence of yolk sac mesodermal progenitors.; Nat Cell Biol, 23: 61-74 |
|
GSE140091 |
| Harley, Jasmine et al. (2024) Telomere shortening induces aging-associated phenotypes in hiPSC-derived neurons and astrocytes.; Biogerontology, 25: 341-360 |
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GSE240447 |
| Harlin, Helena et al. (2009) Chemokine expression in melanoma metastases associated with CD8+ T-cell recruitment.; Cancer Res, 69: 3077-85 |
|
GSE12627 |
| Harmacek, Laura et al. (2014) A unique missense allele of BAF155, a core BAF chromatin remodeling complex protein, causes neural tube closure defects in mice.; Dev Neurobiol, 74: 483-97 |
|
GSE53459 |
| Harman, Joe R et al. (2021) A KMT2A-AFF1 gene regulatory network highlights the role of core transcription factors and reveals the regulatory logic of key downstream target genes.; Genome Res, [no vol.]: [no pages] |
|
GSE151385 |
| Harms, Frederike Leonie et al. (2017) Mutations in EBF3 Disturb Transcriptional Profiles and Cause Intellectual Disability, Ataxia, and Facial Dysmorphism.; Am J Hum Genet, 100: 117-127 |
|
GSE90682 |
| Harms, Paul W et al. (2013) Distinct gene expression profiles of viral- and nonviral-associated merkel cell carcinoma revealed by transcriptome analysis.; J Invest Dermatol, 133: 936-45 |
|
GSE39612 |
| Haro, Kurtis J et al. (2012) Dysregulation of IRP1-mediated iron metabolism causes gamma ray-specific radioresistance in leukemia cells.; PLoS One, 7: e48841 |
|
GSE35372 |
| Harouz, Habiba et al. (2014) Shigella flexneri targets the HP1? subcode through the phosphothreonine lyase OspF.; EMBO J, 33: 2606-22 |
|
GSE60283 |
| Harp, Samuel J et al. (2022) Fentanyl-induced acute and conditioned behaviors in two inbred mouse lines: Potential role for Glyoxalase.; Physiol Behav, 243: 113630 |
|
GSE222569 |
| Harper, James et al. (2011) The transcriptional repressor Blimp1/Prdm1 regulates postnatal reprogramming of intestinal enterocytes.; Proc Natl Acad Sci U S A, 108: 10585-90 |
|
GSE29658 |
| Harper, Matthew M et al. (2019) Blast Preconditioning Protects Retinal Ganglion Cells and Reveals Targets for Prevention of Neurodegeneration Following Blast-Mediated Traumatic Brian Injury.; Invest Ophthalmol Vis Sci, 60: 4159-4170 |
|
GSE133940 |
| Harrell, Constance S et al. (2015) High-fructose diet during periadolescent development increases depressive-like behavior and remodels the hypothalamic transcriptome in male rats.; Psychoneuroendocrinology, 62: 252-64 |
|
GSE56238 |
| Harrill, Joshua A et al. (2008) Transcriptional response of rat frontal cortex following acute in vivo exposure to the pyrethroid insecticides permethrin and deltamethrin.; BMC Genomics, 9: 546 |
|
GSE7955 |
| Harrington, Adam J et al. (2016) MEF2C regulates cortical inhibitory and excitatory synapses and behaviors relevant to neurodevelopmental disorders.; Elife, 5: [no pages] |
|
GSE87202 |
| Harrington, Adam J et al. (2020) MEF2C Hypofunction in Neuronal and Neuroimmune Populations Produces MEF2C Haploinsufficiency Syndrome-like Behaviors in Mice.; Biol Psychiatry, 88: 488-499 |
|
GSE139419 |
| Harripaul, Ricardo et al. (2023) Transcriptome analysis in a humanized mouse model of familial dysautonomia reveals tissue-specific gene expression disruption in the peripheral nervous system.; bioRxiv, [no vol.]: [no pages] |
|
GSE230867 |
| Harris, Audrey et al. (2019) Onecut Factors and Pou2f2 Regulate the Distribution of V2 Interneurons in the Mouse Developing Spinal Cord.; Front Cell Neurosci, 13: 184 |
|
GSE117871 |
| Harris, Georgina et al. (2018) Toxicity, recovery, and resilience in a 3D dopaminergic neuronal in vitro model exposed to rotenone.; Arch Toxicol, 92: 2587-2606 |
|
GSE116280 |
| Harris, Julie A et al. (2005) Gene expression differences over a critical period of afferent-dependent neuron survival in the mouse auditory brainstem.; J Comp Neurol, 493: 460-74 |
|
GSE2390 |
| Harris, Julie A et al. (2008) Afferent deprivation elicits a transcriptional response associated with neuronal survival after a critical period in the mouse cochlear nucleus.; J Neurosci, 28: 10990-1002 |
|
GSE11726 GSE5394 |
| Harris, Lachlan et al. (2018) Neurogenic differentiation by hippocampal neural stem and progenitor cells is biased by NFIX expression.; Development, 145: [no pages] |
|
GSE109817 |
| Harris, Laura W et al. (2008) The cerebral microvasculature in schizophrenia: a laser capture microdissection study.; PLoS One, 3: e3964 |
|
GSE12679 |
| Harris, Lyndsay N et al. (2007) Predictors of resistance to preoperative trastuzumab and vinorelbine for HER2-positive early breast cancer.; Clin Cancer Res, 13: 1198-207 |
|
GSE70233 |
| Harris, Molly A et al. (2008) Cancer stem cells are enriched in the side population cells in a mouse model of glioma.; Cancer Res, 68: 10051-9 |
|
GSE13490 |
| Härmä, Ville et al. (2010) A comprehensive panel of three-dimensional models for studies of prostate cancer growth, invasion and drug responses.; PLoS One, 5: e10431 |
|
GSE19426 |