List of all 21,933 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Hongen, Tsunehiko et al. (2024) Human-Induced Pluripotent Stem Cell-Derived Neural Organoids as a Novel In Vitro Platform for Developmental Neurotoxicity Assessment.; Int J Mol Sci, 25: [no pages] |
|
GSE282273 |
| Hooft van Huijsduijnen, Rob et al. (2013) Anticancer properties of distinct antimalarial drug classes.; PLoS One, 8: e82962 |
|
GSE51739 |
| Hooks, Katarzyna B et al. (2018) New insights into diagnosis and therapeutic options for proliferative hepatoblastoma.; Hepatology, 68: 89-102 |
|
GSE104766 |
| Hooper, Joan E et al. (2017) Systems biology of facial development: contributions of ectoderm and mesenchyme.; Dev Biol, 426: 97-114 |
|
GSE62214 |
| Hopkin, Amelia Soto et al. (2012) GRHL3/GET1 and trithorax group members collaborate to activate the epidermal progenitor differentiation program.; PLoS Genet, 8: e1002829 |
|
GSE37049 GSE38628 |
| Hoppe, George et al. (2016) Comparative systems pharmacology of HIF stabilization in the prevention of retinopathy of prematurity.; Proc Natl Acad Sci U S A, 113: E2516-25 |
|
GSE74170 |
| Hoppmann, Nicola et al. (2015) New candidates for CD4 T cell pathogenicity in experimental neuroinflammation and multiple sclerosis.; Brain, 138: 902-17 |
|
GSE57098 |
| Hor, Charlotte N et al. (2019) Sleep-wake-driven and circadian contributions to daily rhythms in gene expression and chromatin accessibility in the murine cortex.; Proc Natl Acad Sci U S A, 116: 25773-25783 |
|
GSE140345 |
| Horak, Christine E et al. (2013) Biomarker analysis of neoadjuvant doxorubicin/cyclophosphamide followed by ixabepilone or Paclitaxel in early-stage breast cancer.; Clin Cancer Res, 19: 1587-95 |
|
GSE41998 |
| Horakova, Olga et al. (2012) Preservation of metabolic flexibility in skeletal muscle by a combined use of n-3 PUFA and rosiglitazone in dietary obese mice.; PLoS One, 7: e43764 |
|
GSE36718 |
| Horev, Guy et al. (2011) Dosage-dependent phenotypes in models of 16p11.2 lesions found in autism.; Proc Natl Acad Sci U S A, 108: 17076-81 |
|
GSE32012 |
| Horgue, Luis Flores et al. (2022) Transcriptional adaptation of olfactory sensory neurons to GPCR identity and activity.; Nat Commun, 13: 2929 |
|
GSE185167 GSE185166 |
| Hori, Kei et al. (2020) AUTS2 Regulation of Synapses for Proper Synaptic Inputs and Social Communication.; iScience, 23: 101183 |
|
GSE134712 |
| Horie, Masafumi et al. (2016) Transcriptome analysis of periodontitis-associated fibroblasts by CAGE sequencing identified DLX5 and RUNX2 long variant as novel regulators involved in periodontitis.; Sci Rep, 6: 33666 |
|
GSE81870 |
| Horie, Masafumi et al. (2023) An integrative epigenomic approach identifies ELF3 as an oncogenic regulator in ASCL1-positive neuroendocrine carcinoma.; Cancer Sci, 114: 2596-2608 |
|
GSE190618 |
| Horiguchi, Taigo et al. (2019) Gene-expression profile reveals the genetic and acquired phenotypes of hyperactive mutant SPORTS rat.; J Med Invest, 67: 51-61 |
|
GSE87762 |
| Horikawa, Naoki et al. (2020) Anti-VEGF therapy resistance in ovarian cancer is caused by GM-CSF-induced myeloid-derived suppressor cell recruitment.; Br J Cancer, 122: 778-788 |
|
GSE115944 |
| Horiuchi, Shin-Ichiro et al. (2009) Global gene expression changes including drug metabolism and disposition induced by three-dimensional culture of HepG2 cells-Involvement of microtubules.; Biochem Biophys Res Commun, 378: 558-62 |
|
GSE12939 |
| Horiuchi, Y et al. (2016) Molecular signatures associated with cognitive deficits in schizophrenia: a study of biopsied olfactory neural epithelium.; Transl Psychiatry, 6: e915 |
|
GSE73129 |
| Horn, Moritz et al. (2020) Hexosamine Pathway Activation Improves Protein Homeostasis through the Integrated Stress Response.; iScience, 23: 100887 |
|
GSE140357 |
| Hornakova, Tekla et al. (2010) ALL-associated JAK1 mutations confer hypersensitivity to the antiproliferative effect of type I interferon.; Blood, 115: 3287-95 |
|
GSE18239 |
| Horos, Rastislav et al. (2012) Ribosomal deficiencies in Diamond-Blackfan anemia impair translation of transcripts essential for differentiation of murine and human erythroblasts.; Blood, 119: 262-72 |
|
GSE22903 |
| Horsthuis, Thomas et al. (2009) Gene expression profiling of the forming atrioventricular node using a novel tbx3-based node-specific transgenic reporter.; Circ Res, 105: 61-9 |
|
GSE13614 |
| Horvath, Steve et al. (2012) Systems analysis of primary Sjögren's syndrome pathogenesis in salivary glands identifies shared pathways in human and a mouse model.; Arthritis Res Ther, 14: R238 |
|
GSE40611 |
| Horváth, Dorottya et al. (2025) Natriuretic peptides modulate monocyte-derived Langerhans cell differentiation and promote a migratory phenotype.; Front Immunol, 16: 1593141 |
|
GSE291916 |
| Horwitz, Phillip A et al. (2004) Detection of cardiac allograft rejection and response to immunosuppressive therapy with peripheral blood gene expression.; Circulation, 110: 3815-21 |
|
GSE5967 |
| Hosako, Hiromi et al. (2009) Gene and microRNA expression in p53-deficient day 8.5 mouse embryos.; Birth Defects Res A Clin Mol Teratol, 85: 546-55 |
|
GSE11547 |
| Hosang, Leon et al. (2022) The lung microbiome regulates brain autoimmunity.; Nature, 603: 138-144 |
|
GSE192411 |
| Hosein, Abdel Nasser et al. (2015) A functional in vitro model of heterotypic interactions reveals a role for interferon-positive carcinoma associated fibroblasts in breast cancer.; BMC Cancer, 15: 130 |
|
GSE29270 |
| Hoshida, Yujin et al. (2009) Integrative transcriptome analysis reveals common molecular subclasses of human hepatocellular carcinoma.; Cancer Res, 69: 7385-92 |
|
GSE10393 |
| Hoshida, Yujin et al. (2013) Prognostic gene expression signature for patients with hepatitis C-related early-stage cirrhosis.; Gastroenterology, [no vol.]: [no pages] |
|
GSE15654 |
| Hoshino, Akina et al. (2017) Molecular Anatomy of the Developing Human Retina.; Dev Cell, 43: 763-779.e4 |
|
GSE101986 GSE104827 |
| Hosokawa, Kohei et al. (2017) T Cell Transcriptomes from Paroxysmal Nocturnal Hemoglobinuria Patients Reveal Novel Signaling Pathways.; J Immunol, 199: 477-488 |
|
GSE83808 |
| Hosoya, Tomonori et al. (2013) TRIM28 is essential for erythroblast differentiation in the mouse.; Blood, 122: 3798-807 |
|
GSE49843 |
| Hosseini, Seyed Mojtaba et al. (2024) Astrocytes originated from neural stem cells drive the regenerative remodeling of pathologic CSPGs in spinal cord injury.; Stem Cell Reports, 19: 1451-1473 |
|
GSE264511 |
| Hosseini, Shirin et al. (2018) Long-Term Neuroinflammation Induced by Influenza A Virus Infection and the Impact on Hippocampal Neuron Morphology and Function.; J Neurosci, 38: 3060-3080 |
|
GSE106620 |
| Hossini, Amir M et al. (2015) Induced pluripotent stem cell-derived neuronal cells from a sporadic Alzheimer's disease donor as a model for investigating AD-associated gene regulatory networks.; BMC Genomics, 16: 84 |
|
GSE42492 |
| Host, Lionel et al. (2010) Inhibition of histone deacetylases in rats self-administering cocaine regulates lissencephaly gene-1 and reelin gene expression, as revealed by microarray technique.; J Neurochem, 113: 236-47 |
|
GSE18055 |
| Hou, Huiqing et al. (2023) Exosomal miR-128-3p reversed fibrinogen-mediated inhibition of oligodendrocyte progenitor cell differentiation and remyelination after cerebral ischemia.; CNS Neurosci Ther, [no vol.]: [no pages] |
|
GSE206826 |
| Hou, Jinchao et al. (2023) Transcriptomic atlas and interaction networks of brain cells in mouse CNS demyelination and remyelination.; Cell Rep, 42: 112293 |
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GSE204770.1 GSE204770.2 |
| Hou, Jun et al. (2010) Gene expression-based classification of non-small cell lung carcinomas and survival prediction.; PLoS One, 5: e10312 |
|
GSE19188 |
| Hou, Jun et al. (2017) Unique intrahepatic transcriptomics profiles discriminate the clinical phases of a chronic HBV infection.; PLoS One, 12: e0179920 |
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GSE83898 |
| Hou, Li et al. (2025) Transcriptome sequencing and bioinformatics analysis of hippocampus in aged rats with cognitive decline.; Behav Brain Res, 493: 115711 |
|
GSE221245 |
| Hou, Linlin et al. (2020) Concurrent binding to DNA and RNA facilitates the pluripotency reprogramming activity of Sox2.; Nucleic Acids Res, 48: 3869-3887 |
|
GSE115451 |
| Hou, Pei-Shan et al. (2017) Direct Conversion of Human Fibroblasts into Neural Progenitors Using Transcription Factors Enriched in Human ESC-Derived Neural Progenitors.; Stem Cell Reports, 8: 54-68 |
|
GSE81554 |
| Hou, Pingping et al. (2013) Pluripotent stem cells induced from mouse somatic cells by small-molecule compounds.; Science, 341: 651-4 |
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GSE48252 |
| Hou, Shaocong et al. (2024) Intestinal epithelial cell NCoR deficiency ameliorates obesity and metabolic syndrome.; Acta Pharm Sin B, 14: 5267-5285 |
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GSE237833 |
| Hou, Yichen et al. (2024) Engineered mischarged transfer RNAs for correcting pathogenic missense mutations.; Mol Ther, 32: 352-371 |
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GSE236622 |
| Hou, Yiming et al. (2023) Carcinogenesis promotion in oral squamous cell carcinoma: KDM4A complex-mediated gene transcriptional suppression by LEF1.; Cell Death Dis, 14: 510 |
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GSE230372 |
| Hou, Ying-Ju et al. (2013) SARM is required for neuronal injury and cytokine production in response to central nervous system viral infection.; J Immunol, 191: 875-83 |
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GSE44331 |
| Hou, Yu et al. (2025) NGR1 reduces neuronal apoptosis through regulation of ITGA11 following subarachnoid hemorrhage.; Mol Med Rep, 31: [no pages] |
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GSE240154 |
| Hou, Yujun et al. (2021) NAD+supplementation reduces neuroinflammation and cell senescence in a transgenic mouse model of Alzheimer's disease via cGAS-STING.; Proc Natl Acad Sci U S A, 118: [no pages] |
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GSE135999 |
| Hou, Yujun et al. (2024) Urolithin A improves Alzheimer's disease cognition and restores mitophagy and lysosomal functions.; Alzheimers Dement, 20: 4212-4233 |
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GSE212972 |
| Houessinon, Aline et al. (2016) Metallothionein-1 as a biomarker of altered redox metabolism in hepatocellular carcinoma cells exposed to sorafenib.; Mol Cancer, 15: 38 |
|
GSE75620 |
| Hougen, Karina et al. (2010) Cre-loxP DNA recombination is possible with only minimal unspecific transcriptional changes and without cardiomyopathy in Tg(alphaMHC-MerCreMer) mice.; Am J Physiol Heart Circ Physiol, 299: H1671-8 |
|
GSE19344 |
| Houlahan, Kathleen E et al. (2015) Transcriptional profiling of rat hypothalamus response to 2,3,7,8-tetrachlorodibenzo-?-dioxin.; Toxicology, 328: 93-101 |
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GSE18257 GSE61039 |
| Houmard, Brenda et al. (2009) Global gene expression in the human fetal testis and ovary.; Biol Reprod, 81: 438-43 |
|
GSE15431 |
| House, Rachel Rae J et al. (2024) NF1 deficiency drives metabolic reprogramming in ER+ breast cancer.; Mol Metab, 80: 101876 |
|
GSE251692 |
| Houssiau, Frederic A et al. (2020) IFN-α kinoid in systemic lupus erythematosus: results from a phase IIb, randomised, placebo-controlled study.; Ann Rheum Dis, 79: 347-355 |
|
GSE185047 |
| Hovatta, Iiris et al. (2005) Glyoxalase 1 and glutathione reductase 1 regulate anxiety in mice.; Nature, 438: 662-6 |
|
GSE3327 |
| Hovatta, Iiris et al. (2007) DNA variation and brain region-specific expression profiles exhibit different relationships between inbred mouse strains: implications for eQTL mapping studies.; Genome Biol, 8: R25 |
|
GSE4734 |
| Hovav, Hadas Catane et al. (2025) Characterization of Neurensin-2 knockout mice: insights into stress-resilience mechanisms.; Transl Psychiatry, 15: 225 |
|
GSE274515 |
| Hoverter, Nate P et al. (2012) A WNT/p21 circuit directed by the C-clamp, a sequence-specific DNA binding domain in TCFs.; Mol Cell Biol, 32: 3648-62 |
|
GSE37964 |
| Hovhannisyan, Anahit H et al. (2021) Pituitary hormones are specifically expressed in trigeminal sensory neurons and contribute to pain responses in the trigeminal system.; Sci Rep, 11: 17813 |
|
GSE168601 |
| Howard, Caitlin et al. (2023) Probing cerebral malaria inflammation in 3D human brain microvessels.; Cell Rep, 42: 113253 |
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GSE227672 |
| Howard, Nicole C et al. (2018) Mycobacterium tuberculosis carrying a rifampicin drug resistance mutation reprograms macrophage metabolism through cell wall lipid changes.; Nat Microbiol, 3: 1099-1108 |
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GSE115495 |
| Howden, Sara E et al. (2021) Plasticity of distal nephron epithelia from human kidney organoids enables the induction of ureteric tip and stalk.; Cell Stem Cell, 28: 671-684.e6 |
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GSE161255.2 GSE161255.1 GSE161255.3 |
| Howe, James R et al. (2024) Control of innate olfactory valence by segregated cortical amygdala circuits.; bioRxiv, [no vol.]: [no pages] |
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GSE270798 |
| Howell, Gareth R et al. (2011) Molecular clustering identifies complement and endothelin induction as early events in a mouse model of glaucoma.; J Clin Invest, 121: 1429-44 |
|
GSE26299 |
| Howell, Gareth R et al. (2012) Radiation treatment inhibits monocyte entry into the optic nerve head and prevents neuronal damage in a mouse model of glaucoma.; J Clin Invest, 122: 1246-61 |
|
GSE36833 |
| Howrylak, Judie A et al. (2009) Discovery of the gene signature for acute lung injury in patients with sepsis.; Physiol Genomics, 37: 133-9 |
|
GSE10474 |
| Hoye, Mariah L et al. (2017) MicroRNA Profiling Reveals Marker of Motor Neuron Disease in ALS Models.; J Neurosci, 37: 5574-5586 |
|
GSE93412 |
| Hoye, Mariah L et al. (2018) MicroRNA signature of central nervous system-infiltrating dendritic cells in an animal model of multiple sclerosis.; Immunology, 155: 112-122 |
|
GSE111256 |
| Hoye, Mariah L et al. (2022) Aberrant cortical development is driven by impaired cell cycle and translational control in aDDX3Xsyndrome model.; Elife, 11: [no pages] |
|
GSE203078 |
| Hoyer, Friedrich Felix et al. (2019) Tissue-Specific Macrophage Responses to Remote Injury Impact the Outcome of Subsequent Local Immune Challenge.; Immunity, 51: 899-914.e7 |
|
GSE104342 |
| Hozumi, Kaori et al. (2023) Effects of imeglimin on mitochondrial function, AMPK activity, and gene expression in hepatocytes.; Sci Rep, 13: 746 |
|
GSE208245 |
| Hrincius, Eike R et al. (2015) Acute Lung Injury Results from Innate Sensing of Viruses by an ER Stress Pathway.; Cell Rep, 11: 1591-603 |
|
GSE65075 |
| Hrubá, Petra et al. (2015) Molecular diagnostics identifies risks for graft dysfunction despite borderline histologic changes.; Kidney Int, 88: 785-95 |
|
GSE52694 |
| Hsiao, Cheng-Chih et al. (2023) Osteopontin associates with brain TRM-cell transcriptome and compartmentalization in donors with and without multiple sclerosis.; iScience, 26: 105785 |
|
GSE216027 GSE216026 GSE216028 |
| Hsiao, Cheng-Chih et al. (2025) Acquisition of residency programs by T cells entering the human brain.; Cell Rep, 44: 115960 |
|
GSE285938 |
| Hsiao, Gene et al. (2011) Multi-tissue, selective PPAR? modulation of insulin sensitivity and metabolic pathways in obese rats.; Am J Physiol Endocrinol Metab, 300: E164-74 |
|
GSE21329 |
| Hsiao, Kuangfu et al. (2020) A Thalamic Orphan Receptor Drives Variability in Short-Term Memory.; Cell, 183: 522-536.e19 |
|
GSE156836 |
| Hsiao, Yun-Hua Esther et al. (2018) RNA editing in nascent RNA affects pre-mRNA splicing.; Genome Res, 28: 812-823 |
|
GSE105773 |
| Hsiao, Yungyi et al. (2025) Persistent large-scale changes in alternative splicing in prefrontal cortical neuron types following psychedelic exposure.; bioRxiv, [no vol.]: [no pages] |
|
GSE286904 |
| Hsieh, Christine L et al. (2013) Traumatic brain injury induces macrophage subsets in the brain.; Eur J Immunol, [no vol.]: [no pages] |
|
GSE39759 |
| Hsieh, Heidi et al. (2016) Mechanistic studies of the toxicity of zinc gluconate in the olfactory neuronal cell line Odora.; Toxicol In Vitro, 35: 24-30 |
|
GSE79730 |
| Hsieh, Tsung-Han S et al. (2022) Enhancer-promoter interactions and transcription are largely maintained upon acute loss of CTCF, cohesin, WAPL or YY1.; Nat Genet, 54: 1919-1932 |
|
GSE178982 |
| Hsu, Alan Chen-Yu et al. (2011) Human influenza is more effective than avian influenza at antiviral suppression in airway cells.; Am J Respir Cell Mol Biol, 44: 906-13 |
|
GSE19580 |
| Hörhold, Franziska et al. (2020) Reprogramming of macrophages employing gene regulatory and metabolic network models.; PLoS Comput Biol, 16: e1007657 |
|
GSE129253 |
| Hörnberg, Emma et al. (2011) Expression of androgen receptor splice variants in prostate cancer bone metastases is associated with castration-resistance and short survival.; PLoS One, 6: e19059 |
|
GSE29650 |
| Höving, Anna L et al. (2020) Transcriptome Analysis Reveals High Similarities between Adult Human Cardiac Stem Cells and Neural Crest-Derived Stem Cells.; Biology (Basel), 9: [no pages] |
|
GSE129547 |