List of all 21,933 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Hodge, Jennelle C et al. (2009) Identifying the molecular signature of the interstitial deletion 7q subgroup of uterine leiomyomata using a paired analysis.; Genes Chromosomes Cancer, 48: 865-85 |
|
GSE12814 |
| Hodge, Jennelle C et al. (2012) Expression profiling of uterine leiomyomata cytogenetic subgroups reveals distinct signatures in matched myometrium: transcriptional profilingof the t(12;14) and evidence in support of predisposing genetic heterogeneity.; Hum Mol Genet, 21: 2312-29 |
|
GSE18096 |
| Hodges, A et al. (2008) Brain gene expression correlates with changes in behavior in the R6/1 mouse model of Huntington's disease.; Genes Brain Behav, 7: 288-99 |
|
GSE3621 |
| Hodges, Angela et al. (2006) Regional and cellular gene expression changes in human Huntington's disease brain.; Hum Mol Genet, 15: 965-77 |
|
GSE3790 |
| Hodgin, Jeffrey B et al. (2013) Identification of cross-species shared transcriptional networks of diabetic nephropathy in human and mouse glomeruli.; Diabetes, 62: 299-308 |
|
GSE33744 |
| Hodgson, J Graeme et al. (2009) Comparative analyses of gene copy number and mRNA expression in glioblastoma multiforme tumors and xenografts.; Neuro Oncol, [no vol.]: [no pages] |
|
GSE14805 |
| Hodo, Yuji et al. (2013) Association of interleukin-28B genotype and hepatocellular carcinoma recurrence in patients with chronic hepatitis C.; Clin Cancer Res, 19: 1827-37 |
|
GSE41804 |
| Hoeflich, Klaus P et al. (2009) Antitumor efficacy of the novel RAF inhibitor GDC-0879 is predicted by BRAFV600E mutational status and sustained extracellular signal-regulated kinase/mitogen-activated protein kinase pathway suppression.; Cancer Res, 69: 3042-51 |
|
GSE13487 |
| Hoeflich, Klaus P et al. (2009) In vivo antitumor activity of MEK and phosphatidylinositol 3-kinase inhibitors in basal-like breast cancer models.; Clin Cancer Res, 15: 4649-64 |
|
GSE12764 |
| Hoeger, S et al. (2010) Modulation of brain dead induced inflammation by vagus nerve stimulation.; Am J Transplant, 10: 477-89 |
|
GSE16483 |
| Hoek, Kristen L et al. (2015) A cell-based systems biology assessment of human blood to monitor immune responses after influenza vaccination.; PLoS One, 10: e0118528 |
|
GSE64655 |
| Hoek-van den Hil, E F et al. (2014) Quercetin decreases high-fat diet induced body weight gain and accumulation of hepatic and circulating lipids in mice.; Genes Nutr, 9: 418 |
|
GSE51343 |
| Hoek-van den Hil, Elise F et al. (2013) Quercetin induces hepatic lipid omega-oxidation and lowers serum lipid levels in mice.; PLoS One, 8: e51588 |
|
GSE39140 |
| Hoek-van den Hil, Elise F et al. (2015) Quercetin tests negative for genotoxicity in transcriptome analyses of liver and small intestine of mice.; Food Chem Toxicol, 81: 34-9 |
|
GSE63227 |
| Hoekstra, Attje S et al. (2016) Parent-of-origin tumourigenesis is mediated by an essential imprinted modifier in SDHD-linked paragangliomas: SLC22A18 and CDKN1C are candidate tumour modifiers.; Hum Mol Genet, 25: 3715-3728 |
|
GSE80968 |
| Hoellerbauer, Pia et al. (2023) Functional genomic analysis of adult and pediatric brain tumor isolates.; bioRxiv, [no vol.]: [no pages] |
|
GSE213269.2 GSE213269.1 |
| Hoelter, Sabine M et al. (2008) "Sighted C3H" mice--a tool for analysing the influence of vision on mouse behaviour?; Front Biosci, 13: 5810-23 |
|
GSE7855 |
| Hoelting, Lisa et al. (2016) Stem Cell-Derived Immature Human Dorsal Root Ganglia Neurons to Identify Peripheral Neurotoxicants.; Stem Cells Transl Med, 5: 476-87 |
|
GSE75582 |
| Hoelzl, Sarah et al. (2025) Aging promotes reactivation of the Barr body at distal chromosome regions.; Nat Aging, 5: 984-996 |
|
GSE274689 |
| Hofer, D et al. (2014) Testicular synthesis and vitamin D action.; J Clin Endocrinol Metab, 99: 3766-73 |
|
GSE55207 |
| Hoffman, Gabriel E et al. (2017) Transcriptional signatures of schizophrenia in hiPSC-derived NPCs and neurons are concordant with post-mortem adult brains.; Nat Commun, 8: 2225 |
|
GSE106589 |
| Hoffman, Lindsey M et al. (2014) Molecular sub-group-specific immunophenotypic changes are associated with outcome in recurrent posterior fossa ependymoma.; Acta Neuropathol, 127: 731-45 |
|
GSE50385 |
| Hoffman, Olivia R et al. (2025) Disease modification upon 2 weeks of tofacitinib treatment in a mouse model of chronic epilepsy.; Sci Transl Med, 17: eadt0527 |
|
GSE268679 |
| Hoffman, Paul J et al. (2004) Molecular characterization of uterine fibroids and its implication for underlying mechanisms of pathogenesis.; Fertil Steril, 82: 639-49 |
|
GSE593 |
| Hoffmann, Reinhard et al. (2003) Rules for gene usage inferred from a comparison of large-scale gene expression profiles of T and B lymphocyte development.; J Immunol, 170: 1339-53 |
|
GSE272 |
| Hoffmann, Reinhard et al. (2007) Neutrality, compensation, and negative selection during evolution of B-cell development transcriptomes.; Mol Biol Evol, 24: 2610-8 |
|
GSE4590 |
| Hoffmann, Thomas W et al. (2016) Microorganisms linked to inflammatory bowel disease-associated dysbiosis differentially impact host physiology in gnotobiotic mice.; ISME J, 10: 460-77 |
|
GSE63299 |
| Hoffmeister, Helen et al. (2017) CHD3 and CHD4 form distinct NuRD complexes with different yet overlapping functionality.; Nucleic Acids Res, 45: 10534-10554 |
|
GSE93543 |
| Hoffner O'Connor, Michelle et al. (2022) BET Protein Inhibition Regulates Macrophage Chromatin Accessibility and Microbiota-Dependent Colitis.; Front Immunol, 13: 856966 |
|
GSE183564 |
| Hofford, Rebecca S et al. (2021) Alterations in microbiome composition and metabolic byproducts drive behavioral and transcriptional responses to morphine.; Neuropsychopharmacology, 46: 2062-2072 |
|
GSE232836 |
| Hofford, Rebecca S et al. (2025) Brief exposure to oral antibiotics has age-dependent effects on morphine reward and gene expression in the medial prefrontal cortex of adolescent and adult mice.; Brain Behav Immun, 129: 724-735 |
|
GSE303730 |
| Hofmann, Jeffrey W et al. (2015) Reduced expression of MYC increases longevity and enhances healthspan.; Cell, 160: 477-88 |
|
GSE55272 |
| Hofstra, Bente M et al. (2024) Cross-species analysis uncovers the mitochondrial stress response in the hippocampus as a shared mechanism in mouse early life stress and human depression.; Neurobiol Stress, 31: 100643 |
|
GSE254134 |
| Hogenbirk, Marc A et al. (2013) Differential programming of B cells in AID deficient mice.; PLoS One, 8: e69815 |
|
GSE47703 |
| HogenEsch, Harm et al. (2016) Angiogenesis in the skin of SHARPIN-deficient mice with chronic proliferative dermatitis.; Exp Mol Pathol, 101: 303-307 |
|
GSE81683 |
| Hogg, Simon J et al. (2017) BET-Bromodomain Inhibitors Engage the Host Immune System and Regulate Expression of the Immune Checkpoint Ligand PD-L1.; Cell Rep, 18: 2162-2174 |
|
GSE94057.2 GSE94057.1 |
| Hoghooghi, Vahid et al. (2020) Cystatin C Plays a Sex-Dependent Detrimental Role in Experimental Autoimmune Encephalomyelitis.; Cell Rep, 33: 108236 |
|
GSE157624 |
| Hohoff, Christa et al. (2013) Effect of acute stressor and serotonin transporter genotype on amygdala first wave transcriptome in mice.; PLoS One, 8: e58880 |
|
GSE40393 |
| Hohsfield, Lindsay A et al. (2020) Effects of long-term and brain-wide colonization of peripheral bone marrow-derived myeloid cells in the CNS.; J Neuroinflammation, 17: 279 |
|
GSE157593 |
| Hohsfield, Lindsay A et al. (2021) Subventricular zone/white matter microglia reconstitute the empty adult microglial niche in a dynamic wave.; Elife, 10: [no pages] |
|
GSE166092 |
| Hoi, Kimberly K et al. (2023) Primary cilia control oligodendrocyte precursor cell proliferation in white matter injury via Hedgehog-independent CREB signaling.; Cell Rep, 42: 113272 |
|
GSE243997 |
| Hojman, Pernille et al. (2007) Gene expression profiles in skeletal muscle after gene electrotransfer.; BMC Mol Biol, 8: 56 |
|
GSE6686 |
| Hojo, Motoki et al. (2023) Time-Course of Transcriptomic Change in the Lungs of F344 Rats Repeatedly Exposed to a Multiwalled Carbon Nanotube in a 2-Year Test.; Nanomaterials (Basel), 13: [no pages] |
|
GSE234151 |
| Hokama, Masaaki et al. (2014) Altered expression of diabetes-related genes in Alzheimer's disease brains: the Hisayama study.; Cereb Cortex, 24: 2476-88 |
|
GSE36980 GSE36981 |
| Hokayem, Marie et al. (2013) Grape polyphenols prevent fructose-induced oxidative stress and insulin resistance in first-degree relatives of type 2 diabetic patients.; Diabetes Care, 36: 1454-61 |
|
GSE35764 |
| Holbrook, Joanna D et al. (2011) Deep sequencing of gastric carcinoma reveals somatic mutations relevant to personalized medicine.; J Transl Med, 9: 119 |
|
GSE29998 |
| Holczbauer, Agnes et al. (2013) Modeling pathogenesis of primary liver cancer in lineage-specific mouse cell types.; Gastroenterology, 145: 221-31 |
|
GSE41312 |
| Holik, Aliaksei Z et al. (2013) Brg1 is required for stem cell maintenance in the murine intestinal epithelium in a tissue-specific manner.; Stem Cells, 31: 2457-66 |
|
GSE46129 |
| Holl, Daniel et al. (2011) Transgenic overexpression of Tcfap2c/AP-2gamma results in liver failure and intestinal dysplasia.; PLoS One, 6: e22034 |
|
GSE28692 |
| Holland, Jenna et al. (2019) A Brain-Melanocortin-Vagus Axis Mediates Adipose Tissue Expansion Independently of Energy Intake.; Cell Rep, 27: 2399-2410.e6 |
|
GSE128383 |
| Holland, Steven M et al. (2007) STAT3 mutations in the hyper-IgE syndrome.; N Engl J Med, 357: 1608-19 |
|
GSE8507 |
| Holleman, Amy et al. (2004) Gene-expression patterns in drug-resistant acute lymphoblastic leukemia cells and response to treatment.; N Engl J Med, 351: 533-42 |
|
GSE635 |
| Hollenhorst, Peter C et al. (2011) The ETS gene ETV4 is required for anchorage-independent growth and a cell proliferation gene expression program in PC3 prostate cells.; Genes Cancer, 1: 1044-1052 |
|
GSE21209 |
| Hollensen, Anne Kruse et al. (2020) circZNF827nucleates a transcription inhibitory complex to balance neuronal differentiation.; Elife, 9: [no pages] |
|
GSE157788 |
| Hollern, D P et al. (2013) A mouse model with T58A mutations in Myc reduces the dependence on KRas mutations and has similarities to claudin-low human breast cancer.; Oncogene, 32: 1296-304 |
|
GSE30805 |
| Hollestelle, Antoinette et al. (2010) Distinct gene mutation profiles among luminal-type and basal-type breast cancer cell lines.; Breast Cancer Res Treat, 121: 53-64 |
|
GSE16795 |
| Hollingshead, Melinda G et al. (2014) Gene expression profiling of 49 human tumor xenografts from in vitro culture through multiple in vivo passages - strategies for data mining in support of therapeutic studies.; BMC Genomics, 15: 393 |
|
GSE48433 GSE49353.1 |
| Holloway, Kalee N et al. (2023) Cerebellar Transcriptomic Analysis in a Chronic plus Binge Mouse Model of Alcohol Use Disorder Demonstrates Ethanol-Induced Neuroinflammation and Altered Glial Gene Expression.; Cells, 12: [no pages] |
|
GSE222445 |
| Holloway, Kalee N et al. (2023) Ethanol-induced cerebellar transcriptomic changes in a postnatal model of fetal alcohol spectrum disorders: Focus on disease onset.; Front Neurosci, 17: 1154637 |
|
GSE226532 |
| Holloway, Kristopher et al. (2025) Elevated p16Ink4a Expression Enhances Tau Phosphorylation in Neurons Differentiated From Human-Induced Pluripotent Stem Cells.; Aging Cell, 24: e14472 |
|
GSE252132 |
| Holmes, Andrew P et al. (2016) Reductions in hypothalamic Gfap expression, glial cells and α-tanycytes in lean and hypermetabolic Gnasxl-deficient mice.; Mol Brain, 9: 39 |
|
GSE75878 |
| Holmes, Derek A et al. (2015) Dusp5 negatively regulates IL-33-mediated eosinophil survival and function.; EMBO J, 34: 218-35 |
|
GSE62999 |
| Holmes, Kelly A et al. (2012) Transducin-like enhancer protein 1 mediates estrogen receptor binding and transcriptional activity in breast cancer cells.; Proc Natl Acad Sci U S A, 109: 2748-53 |
|
GSE39564 |
| Holmes, Tim D et al. (2021) The transcription factor Bcl11b promotes both canonical and adaptive NK cell differentiation.; Sci Immunol, 6: [no pages] |
|
GSE162472 |
| Holmfeldt, Linda et al. (2013) The genomic landscape of hypodiploid acute lymphoblastic leukemia.; Nat Genet, 45: 242-52 |
|
GSE38463 |
| Holmsten, Karin et al. (2024) Molecular Subtypes Are Associated With Clinical Benefit in Cisplatin-Treated Metastatic Urothelial Cancer Patients.; JCO Precis Oncol, 8: e2400209 |
|
GSE250194 |
| Holopainen, Tanja et al. (2015) Endothelial Bmx tyrosine kinase activity is essential for myocardial hypertrophy and remodeling.; Proc Natl Acad Sci U S A, 112: 13063-8 |
|
GSE47420 |
| Holt, Leanne M et al. (2019) Astrocyte morphogenesis is dependent on BDNF signaling via astrocytic TrkB.T1.; Elife, 8: [no pages] |
|
GSE122176 |
| Holt, Leanne M et al. (2025) Astrocytic CREB in Nucleus Accumbens Promotes Susceptibility to Chronic Stress.; Biol Psychiatry, 97: 862-873 |
|
GSE284730 |
| Holweg, Cécile T J et al. (2011) Identification and classification of acute cardiac rejection by intragraft transcriptional profiling.; Circulation, 123: 2236-43 |
|
GSE9377 |
| Holwerda, Sjoerd J B et al. (2013) Allelic exclusion of the immunoglobulin heavy chain locus is independent of its nuclear localization in mature B cells.; Nucleic Acids Res, 41: 6905-16 |
|
GSE46865 |
| Holze, Janine et al. (2024) Label-free biosensor assay decodes the dynamics of Toll-like receptor signaling.; Nat Commun, 15: 9554 |
|
GSE250544 GSE250545 |
| Homayounfar, Negar et al. (2015) Transcriptional analysis of human cranial compartments with different embryonic origins.; Arch Oral Biol, 60: 1450-60 |
|
GSE62816 |
| Homminga, Irene et al. (2011) Integrated transcript and genome analyses reveal NKX2-1 and MEF2C as potential oncogenes in T cell acute lymphoblastic leukemia.; Cancer Cell, 19: 484-97 |
|
GSE26713 |
| Honda, Daiyu et al. (2013) The ALS/FTLD-related RNA-binding proteins TDP-43 and FUS have common downstream RNA targets in cortical neurons.; FEBS Open Bio, 4: 1-10 |
|
GSE46147 |
| Honda, Masao et al. (2010) Differential interferon signaling in liver lobule and portal area cells under treatment for chronic hepatitis C.; J Hepatol, 53: 817-26 |
|
GSE17183 |
| Honeycutt, Samuel E et al. (2023) Netrin 1 directs vascular patterning and maturity in the developing kidney.; Development, 150: [no pages] |
|
GSE245506 |
| Hong, Aayoung et al. (2018) Exploiting Drug Addiction Mechanisms to Select against MAPKi-Resistant Melanoma.; Cancer Discov, 8: 74-93 |
|
GSE87326 |
| Hong, Candice Sun et al. (2016) MCT1 Modulates Cancer Cell Pyruvate Export and Growth of Tumors that Co-express MCT1 and MCT4.; Cell Rep, 14: 1590-1601 |
|
GSE76675 |
| Hong, Dawon et al. (2024) Integrative analysis of single-cell RNA-seq and gut microbiome metabarcoding data elucidates macrophage dysfunction in mice with DSS-induced ulcerative colitis.; Commun Biol, 7: 731 |
|
GSE264408 |
| Hong, Hyebeen et al. (2022) Postnatal regulation of B-1a cell development and survival by the CIC-PER2-BHLHE41 axis.; Cell Rep, 38: 110386 |
|
GSE163455 |
| Hong, Hyenjong et al. (2009) Suppression of induced pluripotent stem cell generation by the p53-p21 pathway.; Nature, 460: 1132-5 |
|
GSE13334 |
| Hong, Jun Young et al. (2020) Long-Term Programming of CD8 T Cell Immunity by Perinatal Exposure to Glucocorticoids.; Cell, 180: 847-861.e15 |
|
GSE136978 |
| Hong, Juyeong et al. (2022) PRC2-Mediated Epigenetic Suppression of Type I IFN-STAT2 Signaling Impairs Antitumor Immunity in Luminal Breast Cancer.; Cancer Res, 82: 4624-4640 |
|
GSE183458.2 GSE183458.1 |
| Hong, Lisa Y Q et al. (2023) Altered expression, but small contribution, of the histone demethylase KDM6A in obstructive uropathy in mice.; Dis Model Mech, 16: [no pages] |
|
GSE205759 |
| Hong, Yi et al. (2007) A susceptibility gene set for early onset colorectal cancer that integrates diverse signaling pathways: implication for tumorigenesis.; Clin Cancer Res, 13: 1107-14 |
|
GSE4107 |
| Hong, Yi et al. (2010) A 'metastasis-prone' signature for early-stage mismatch-repair proficient sporadic colorectal cancer patients and its implications for possible therapeutics.; Clin Exp Metastasis, 27: 83-90 |
|
GSE9348 |
| Hong, Yiwen et al. (2023) MicroRNA-124-3p Attenuated Retinal Neovascularization in Oxygen-Induced Retinopathy Mice by Inhibiting the Dysfunction of Retinal Neuroglial Cells through STAT3 Pathway.; Int J Mol Sci, 24: [no pages] |
|
GSE231376 |
| Hong, Yourae et al. (2023) Single Cell Analysis of Human Thyroid Reveals the Transcriptional Signatures of Aging.; Endocrinology, 164: [no pages] |
|
GSE223765 |
| Högnäs, Gunilla et al. (2013) Aneuploidy facilitates oncogenic transformation via specific genetic alterations, including Twist2 upregulation.; Carcinogenesis, [no vol.]: [no pages] |
|
GSE23729 |
| Högström, Jenny et al. (2018) Transcription Factor PROX1 Suppresses Notch Pathway Activation via the Nucleosome Remodeling and Deacetylase Complex in Colorectal Cancer Stem-like Cells.; Cancer Res, 78: 5820-5832 |
|
GSE117981 |
| Höing, Susanne et al. (2012) Discovery of inhibitors of microglial neurotoxicity acting through multiple mechanisms using a stem-cell-based phenotypic assay.; Cell Stem Cell, [no vol.]: [no pages] |
|
GSE37612 GSE37611 |
| Höllbacher, Barbara et al. (2022) Machine learning reveals STAT motifs as predictors for GR-mediated gene repression.; Comput Struct Biotechnol J, 21: 1697-1710 |
|
GSE186513 |