List of all 21,933 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Hughes, Erik P et al. (2025) OCA-B promotes pathogenic maturation of stem-like CD4+ T cells and autoimmune demyelination.; J Clin Invest, 135: [no pages] |
|
GSE243726 |
| Hughes, James M et al. (2015) C/EBPα-p30 protein induces expression of the oncogenic long non-coding RNA UCA1 in acute myeloid leukemia.; Oncotarget, 6: 18534-44 |
|
GSE65235 |
| Hughes, Laetitia A et al. (2023) Copy number variation in tRNA isodecoder genes impairs mammalian development and balanced translation.; Nat Commun, 14: 2210 |
|
GSE223662 |
| Hughes, Michael E et al. (2009) Harmonics of circadian gene transcription in mammals.; PLoS Genet, 5: e1000442 |
|
GSE11923 GSE13949 GSE11922 |
| Hughes, Michael E et al. (2012) Brain-specific rescue of Clock reveals system-driven transcriptional rhythms in peripheral tissue.; PLoS Genet, 8: e1002835 |
|
GSE30411 |
| Hughes, Sean M et al. (2020) Treatment with Commonly Used Antiretroviral Drugs Induces a Type I/III Interferon Signature in the Gut in the Absence of HIV Infection.; Cell Rep Med, 1: 100096 |
|
GSE139644 GSE139654 GSE139649 GSE139411 GSE139645 |
| Hugo, Willy et al. (2016) Genomic and Transcriptomic Features of Response to Anti-PD-1 Therapy in Metastatic Melanoma.; Cell, 165: 35-44 |
|
GSE78220 |
| Hui, Lisa et al. (2013) Global gene expression analysis of amniotic fluid cell-free RNA from recipient twins with twin-twin transfusion syndrome.; Prenat Diagn, [no vol.]: [no pages] |
|
GSE47393 GSE47392 |
| Huleihel, Luai et al. (2014) Let-7d microRNA affects mesenchymal phenotypic properties of lung fibroblasts.; Am J Physiol Lung Cell Mol Physiol, 306: L534-42 |
|
GSE38530 |
| Hulsmans, Maarten et al. (2012) Interleukin-1 receptor-associated kinase-3 is a key inhibitor of inflammation in obesity and metabolic syndrome.; PLoS One, 7: e30414 |
|
GSE32575 |
| Hultsch, Susanne et al. (2018) Association of tamoxifen resistance and lipid reprogramming in breast cancer.; BMC Cancer, 18: 850 |
|
GSE111151 |
| Hulur, Imge et al. (2015) Enrichment of inflammatory bowel disease and colorectal cancer risk variants in colon expression quantitative trait loci.; BMC Genomics, 16: 138 |
|
GSE56789 |
| Hum, Nicholas R et al. (2022) MAVS mediates a protective immune response in the brain to Rift Valley fever virus.; PLoS Pathog, 18: e1010231 |
|
GSE200881 |
| Humeniuk, R et al. (2007) Aplidin synergizes with cytosine arabinoside: functional relevance of mitochondria in Aplidin-induced cytotoxicity.; Leukemia, 21: 2399-405 |
|
GSE5681 |
| Hummel, Michael et al. (2006) A biologic definition of Burkitt's lymphoma from transcriptional and genomic profiling.; N Engl J Med, 354: 2419-30 |
|
GSE4475 |
| Hummon, Amanda B et al. (2012) Systems-wide RNAi analysis of CASP8AP2/FLASH shows transcriptional deregulation of the replication-dependent histone genes and extensive effects on the transcriptome of colorectal cancer cells.; Mol Cancer, 11: 1 |
|
GSE29405 |
| Humphrey, Jack et al. (2020) FUS ALS-causative mutations impair FUS autoregulation and splicing factor networks through intron retention.; Nucleic Acids Res, 48: 6889-6905 |
|
GSE147288 |
| Humphreys, Tricia L et al. (2007) Dysregulated immune profiles for skin and dendritic cells are associated with increased host susceptibility to Haemophilus ducreyi infection in human volunteers.; Infect Immun, 75: 5686-97 |
|
GSE5547 |
| Huna, Anda et al. (2023) RSK3 switches cell fate: from stress-induced senescence to malignant progression.; J Exp Clin Cancer Res, 42: 318 |
|
GSE243320 |
| Hundeshagen, Alexander et al. (2012) Elevated type I interferon-like activity in a subset of multiple sclerosis patients: molecular basis and clinical relevance.; J Neuroinflammation, 9: 140 |
|
GSE33464 |
| Hung, Chi F et al. (2022) Effect of lung pericyte-like cell ablation on the bleomycin model of injury and repair.; Am J Physiol Lung Cell Mol Physiol, 322: L607-L616 |
|
GSE184761 |
| Hung, Christy et al. (2025) Mislocalization of nucleic acids is a convergent and targetable mechanism in Alzheimer's disease and frontotemporal dementia.; Cell Rep, 44: 115867 |
|
GSE277599 |
| Hung, Hao-Chih et al. (2024) A dominant negative Kcnd3 F227del mutation in mice causes spinocerebellar ataxia type 22 (SCA22) by impairing ER and Golgi functioning.; J Pathol, [no vol.]: [no pages] |
|
GSE280998 |
| Hung, Shu-Ting et al. (2023) PIKFYVE inhibition mitigates disease in models of diverse forms of ALS.; Cell, 186: 786-802.e28 |
|
GSE221015 GSE221016 |
| Hung, Yun-Fen et al. (2018) Endosomal TLR3, TLR7, and TLR8 control neuronal morphology through different transcriptional programs.; J Cell Biol, [no vol.]: [no pages] |
|
GSE107199 |
| Hung, Yun-Fen et al. (2018) Tlr7 deletion alters expression profiles of genes related to neural function and regulates mouse behaviors and contextual memory.; Brain Behav Immun, 72: 101-113 |
|
GSE114814 |
| Hunt, Darlene L et al. (2012) Early postmyocardial infarction survival in Murphy Roths Large mice is mediated by attenuated apoptosis and inflammation but depends on genetic background.; Exp Physiol, 97: 102-14 |
|
GSE19322 |
| Hunter, Miranda V et al. (2025) Mechanical confinement governs phenotypic plasticity in melanoma.; Nature, 647: 517-527 |
|
GSE253800 GSE253801 |
| Hunter, Patricia J et al. (2010) Biologic predictors of extension of oligoarticular juvenile idiopathic arthritis as determined from synovial fluid cellular composition and gene expression.; Arthritis Rheum, 62: 896-907 |
|
GSE15083 |
| Hunter, Richard G et al. (2016) Stress and corticosteroids regulate rat hippocampal mitochondrial DNA gene expression via the glucocorticoid receptor.; Proc Natl Acad Sci U S A, 113: 9099-104 |
|
GSE84249 |
| Hunter, Russell et al. (2023) Gestational ozone inhalation elicits maternal cardiac dysfunction and transcriptional changes to placental pericytes and endothelial cells.; Toxicol Sci, 196: 238-249 |
|
GSE234021 |
| Hunter, Samuel et al. (2023) Transcription dosage compensation does not occur in Down syndrome.; BMC Biol, 21: 228 |
|
GSE230995 |
| Hunter, Zachary R et al. (2016) Transcriptome sequencing reveals a profile that corresponds to genomic variants in Waldenström macroglobulinemia.; Blood, 128: 827-38 |
|
GSE83150 |
| Huntley, Melanie A et al. (2016) Complex regulation of ADAR-mediated RNA-editing across tissues.; BMC Genomics, 17: 61 |
|
GSE74747 |
| Huntley, Melanie A et al. (2019) Genome-wide analysis of differential gene expression and splicing in excitatory neurons and interneuron subtypes.; J Neurosci, [no vol.]: [no pages] |
|
GSE122100 |
| Huo, Chunyue et al. (2018) Abnormalities in behaviour, histology and prefrontal cortical gene expression profiles relevant to schizophrenia in embryonic day 17 MAM-Exposed C57BL/6 mice.; Neuropharmacology, 140: 287-301 |
|
GSE108925 |
| Huot, Geneviève et al. (2014) CHES1/FOXN3 regulates cell proliferation by repressing PIM2 and protein biosynthesis.; Mol Biol Cell, 25: 554-65 |
|
GSE49422 |
| Hupe, Mike et al. (2014) Evaluation of TRAP-sequencing technology with a versatile conditional mouse model.; Nucleic Acids Res, 42: e14 |
|
GSE51619 |
| Hupkes, Marlinda et al. (2014) MicroRNA miR-378 promotes BMP2-induced osteogenic differentiation of mesenchymal progenitor cells.; BMC Mol Biol, 15: 1 |
|
GSE51883 |
| Hur, Junguk et al. (2011) The identification of gene expression profiles associated with progression of human diabetic neuropathy.; Brain, 134: 3222-35 |
|
GSE24290 |
| Hurley, Daniel et al. (2012) Gene network inference and visualization tools for biologists: application to new human transcriptome datasets.; Nucleic Acids Res, 40: 2377-98 |
|
GSE27869 |
| Hurley, Shaun et al. (2021) Distinct, dosage-sensitive requirements for the autism-associated factor CHD8 during cortical development.; Mol Autism, 12: 16 |
|
GSE121381 |
| Hurwitz, Stephanie N et al. (2023) Neutral sphingomyelinase blockade enhances hematopoietic stem cell fitness through an integrated stress response.; Blood, 142: 1708-1723 |
|
GSE226348 |
| Husain, Basma Fatima Anwar et al. (2015) Hippocampal transcriptional and neurogenic changes evoked by combination yohimbine and imipramine treatment.; Prog Neuropsychopharmacol Biol Psychiatry, 61: 1-9 |
|
GSE61301 |
| Husain, Mainul et al. (2013) Pulmonary instillation of low doses of titanium dioxide nanoparticles in mice leads to particle retention and gene expression changes in the absence of inflammation.; Toxicol Appl Pharmacol, 269: 250-62 |
|
GSE41041 |
| Husain, Mainul et al. (2015) Intratracheally instilled titanium dioxide nanoparticles translocate to heart and liver and activate complement cascade in the heart of C57BL/6 mice.; Nanotoxicology, 9: 1013-22 |
|
GSE56324 GSE56325 |
| Husain, Ralf A et al. (2024) Biallelic NUDT2 variants defective in mRNA decapping cause a neurodevelopmental disease.; Brain, 147: 1197-1205 |
|
GSE230789 |
| Hussain, Mustafa et al. (2009) Tobacco smoke induces polycomb-mediated repression of Dickkopf-1 in lung cancer cells.; Cancer Res, 69: 3570-8 |
|
GSE13309 |
| Hussain, Naveed et al. (2008) Effects of prenatal tobacco exposure on gene expression profiling in umbilical cord tissue.; Pediatr Res, 64: 147-53 |
|
GSE11798 |
| Hussain, Shobbir et al. (2013) NSun2-mediated cytosine-5 methylation of vault noncoding RNA determines its processing into regulatory small RNAs.; Cell Rep, 4: 255-61 |
|
GSE44384 |
| Hussain, Shobbir et al. (2013) The mouse cytosine-5 RNA methyltransferase NSun2 is a component of the chromatoid body and required for testis differentiation.; Mol Cell Biol, 33: 1561-70 |
|
GSE39480 |
| Hussain, Tabish et al. (2023) WWOX P47T partial loss-of-function mutation induces epilepsy, progressive neuroinflammation, and cerebellar degeneration in mice phenocopying human SCAR12.; Prog Neurobiol, 223: 102425 |
|
GSE215425 |
| Hussey, George S et al. (2012) Establishment of a TGF?-induced post-transcriptional EMT gene signature.; PLoS One, 7: e52624 |
|
GSE40466 |
| Hutcheson, Jack et al. (2008) Combined deficiency of proapoptotic regulators Bim and Fas results in the early onset of systemic autoimmunity.; Immunity, 28: 206-17 |
|
GSE10325 |
| Hutchings, Amy-Jayne et al. (2024) Plekhg5 controls the unconventional secretion of Sod1 by presynaptic secretory autophagy.; Nat Commun, 15: 8622 |
|
GSE269588 |
| Hutchins, Andrew Paul et al. (2013) Co-motif discovery identifies an Esrrb-Sox2-DNA ternary complex as a mediator of transcriptional differences between mouse embryonic and epiblast stem cells.; Stem Cells, 31: 269-81 |
|
GSE34170 |
| Hutchins, Andrew Paul et al. (2015) Genomic analysis of LPS-stimulated myeloid cells identifies a common pro-inflammatory response but divergent IL-10 anti-inflammatory responses.; Sci Rep, 5: 9100 |
|
GSE55385 |
| Hutin, David et al. (2021) 2,3,7,8-Tetrachlorodibenzo-p-Dioxin (TCDD)-Inducible Poly-ADP-Ribose Polymerase (TIPARP/PARP7) Catalytic Mutant Mice (TiparpH532A) Exhibit Increased Sensitivity to TCDD-Induced Hepatotoxicity and Lethality.; Toxicol Sci, 183: 154-169 |
|
GSE167205 |
| Hutson, Thomas H et al. (2019) Cbp-dependent histone acetylation mediates axon regeneration induced by environmental enrichment in rodent spinal cord injury models.; Sci Transl Med, 11: [no pages] |
|
GSE125793 |
| Huttner, Hagen B et al. (2014) The age and genomic integrity of neurons after cortical stroke in humans.; Nat Neurosci, 17: 801-3 |
|
GSE56267 |
| Hutton, Scott R et al. (2017) ERK/MAPK Signaling Is Required for Pathway-Specific Striatal Motor Functions.; J Neurosci, 37: 8102-8115 |
|
GSE93844 |
| Huu Hoang, Truong et al. (2022) Cancer cells produce liver metastasis via gap formation in sinusoidal endothelial cells through proinflammatory paracrine mechanisms.; Sci Adv, 8: eabo5525 |
|
GSE202457 |
| Huyghe, A et al. (2022) Comparative roadmaps of reprogramming and oncogenic transformation identify Bcl11b and Atoh8 as broad regulators of cellular plasticity.; Nat Cell Biol, 24: 1350-1363 |
|
GSE181800 GSE143593 |
| Huynh, Hung et al. (2008) Bevacizumab and rapamycin induce growth suppression in mouse models of hepatocellular carcinoma.; J Hepatol, 49: 52-60 |
|
GSE6465 |
| Huynh, Nguyen P T et al. (2024) Shared patterns of glial transcriptional dysregulation link Huntington's disease and schizophrenia.; Brain, [no vol.]: [no pages] |
|
GSE188558 |
| Huynh, Nha Van et al. (2023) Mild dehydration effects on the murine kidney single-nucleus transcriptome and chromatin accessibility.; Am J Physiol Renal Physiol, 325: F717-F732 |
|
GSE232792 |
| Hwang, Dong-Joo et al. (2025) Differential behavior responses and genetic alteration underpinning exercise effectiveness in stress-susceptible mice.; Sci Rep, 15: 14818 |
|
GSE283250 |
| Hwang, Grace H et al. (2024) A Benzarone Derivative Inhibits EYA to Suppress Tumor Growth in SHH Medulloblastoma.; Cancer Res, 84: 872-886 |
|
GSE229192 GSE229176 |
| Hwang, Hun-Way et al. (2016) PAPERCLIP Identifies MicroRNA Targets and a Role of CstF64/64tau in Promoting Non-canonical poly(A) Site Usage.; Cell Rep, 15: 423-35 |
|
GSE66092.1 |
| Hwang, Hun-Way et al. (2017) cTag-PAPERCLIP Reveals Alternative Polyadenylation Promotes Cell-Type Specific Protein Diversity and Shifts Araf Isoforms with Microglia Activation.; Neuron, 95: 1334-1349.e5 |
|
GSE94054 |
| Hwang, Hye-Yeon et al. (2024) Precise editing of pathogenic nucleotide repeat expansions in iPSCs using paired prime editor.; Nucleic Acids Res, 52: 5792-5803 |
|
GSE248085 |
| Hwang, Inah et al. (2018) Far Upstream Element-Binding Protein 1 Regulates LSD1 Alternative Splicing to Promote Terminal Differentiation of Neural Progenitors.; Stem Cell Reports, 10: 1208-1221 |
|
GSE108537 |
| Hwang, Inah et al. (2018) FOXO protects against age-progressive axonal degeneration.; Aging Cell, 17: [no pages] |
|
GSE102137 |
| Hwang, Seo-Kyoung et al. (2026) A rat model of Immunologic and hypertensive kidney injury.; Sci Rep, 16: 2415 |
|
GSE283627 |
| Hwang, Seungwoo et al. (2011) Gene expression pattern in transmitochondrial cytoplasmic hybrid cells harboring type 2 diabetes-associated mitochondrial DNA haplogroups.; PLoS One, 6: e22116 |
|
GSE26244 |
| Hwang, William W et al. (2014) Distinct and separable roles for EZH2 in neurogenic astroglia.; Elife, 3: e02439 |
|
GSE56988 |
| Hyduke, Daniel R et al. (2013) Identifying radiation exposure biomarkers from mouse blood transcriptome.; Int J Bioinform Res Appl, 9: 365-85 |
|
GSE33172 |
| Hyland, Kendra A et al. (2009) The early interferon response of nasal-associated lymphoid tissue to Streptococcus pyogenes infection.; FEMS Immunol Med Microbiol, 55: 422-31 |
|
GSE11494 |
| Hyland, Paula L et al. (2014) Global changes in gene expression of Barrett's esophagus compared to normal squamous esophagus and gastric cardia tissues.; PLoS One, 9: e93219 |
|
GSE39491 |
| Hyldahl, Robert D et al. (2011) Activation of nuclear factor-κB following muscle eccentric contractions in humans is localized primarily to skeletal muscle-residing pericytes.; FASEB J, 25: 2956-66 |
|
GSE23697 |
| Hyrcza, Martin D et al. (2007) Distinct transcriptional profiles in ex vivo CD4+ and CD8+ T cells are established early in human immunodeficiency virus type 1 infection and are characterized by a chronic interferon response as well as extensive transcriptional changes in CD8+ T cells.; J Virol, 81: 3477-86 |
|
GSE6740 |
| Hysolli, Eriona et al. (2016) Regulation of the DNA Methylation Landscape in Human Somatic Cell Reprogramming by the miR-29 Family.; Stem Cell Reports, 7: 43-54 |
|
GSE81791 |
| Hyvärinen, Kati et al. (2013) The effect of proatherogenic pathogens on adipose tissue transcriptome and fatty acid distribution in apolipoprotein E-deficient mice.; BMC Genomics, 14: 709 |
|
GSE50647 |
| Høland, Maren et al. (2023) Transcriptomic subtyping of malignant peripheral nerve sheath tumours highlights immune signatures, genomic profiles, patient survival and therapeutic targets.; EBioMedicine, 97: 104829 |
|
GSE241224 |
| Hüttmann, A et al. (2006) Gene expression signatures separate B-cell chronic lymphocytic leukaemia prognostic subgroups defined by ZAP-70 and CD38 expression status.; Leukemia, 20: 1774-82 |
|
GSE4392 |
| Hütz, Katharina et al. (2014) The stem cell factor SOX2 regulates the tumorigenic potential in human gastric cancer cells.; Carcinogenesis, 35: 942-50 |
|
GSE42937 |
| Iaccarino, Hunter F et al. (2016) Gamma frequency entrainment attenuates amyloid load and modifies microglia.; Nature, 540: 230-235 |
|
GSE77471 |
| Iacoba?, Dumitru A et al. (2018) ACTH and PMX53 recover synaptic transcriptome alterations in a rat model of infantile spasms.; Sci Rep, 8: 5722 |
|
GSE81061 |