List of all 21,933 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Javadi, Sahar et al. (2022) Sustained correction of hippocampal neurogenic and cognitive deficits after a brief treatment by Nutlin-3 in a mouse model of fragile X syndrome.; BMC Med, 20: 163 |
|
GSE198403 |
| Javed, Awais et al. (2023) Ikaros family proteins redundantly regulate temporal patterning in the developing mouse retina.; Development, 150: [no pages] |
|
GSE189590 |
| Jayabal, Panneerselvam et al. (2023) Nitric oxide suppression by secreted frizzled-related protein 2 drives retinoblastoma.; Cell Rep, 42: 112103 |
|
GSE161990 |
| Jayanthi, Subramaniam et al. (2018) Methamphetamine Induces TET1- and TET3-Dependent DNA Hydroxymethylation of Crh and Avp Genes in the Rat Nucleus Accumbens.; Mol Neurobiol, 55: 5154-5166 |
|
GSE46717 |
| Jayapal, Manikandan et al. (2006) Genome-wide gene expression profiling of human mast cells stimulated by IgE or FcepsilonRI-aggregation reveals a complex network of genes involved in inflammatory responses.; BMC Genomics, 7: 210 |
|
GSE1933 |
| Jayaraman, Arul et al. (2009) Gene expression profiling of long-term changes in rat liver following burn injury.; J Surg Res, 152: 3-17,17.e1-2 |
|
GSE1860 |
| Jayaraman, Swaathi et al. (2020) Antitumor activity of Z-endoxifen in aromatase inhibitor-sensitive and aromatase inhibitor-resistant estrogen receptor-positive breast cancer.; Breast Cancer Res, 22: 51 |
|
GSE146911 |
| Jayasinghe, Varuna et al. (2025) Genomic crosstalk between carbachol, a muscarinic receptor agonist, and the long-acting β2-adrenoceptor agonist, indacaterol, in human airway epithelial cells.; J Pharmacol Exp Ther, 392: 103579 |
|
GSE282554 |
| Jayavelu, Ashok Kumar et al. (2020) Splicing factor YBX1 mediates persistence of JAK2-mutated neoplasms.; Nature, 588: 157-163 |
|
GSE123417 |
| Jayne, Nathan D et al. (2024) RUNX1 C-terminal mutations impair blood cell differentiation by perturbing specific enhancer-promoter networks.; Blood Adv, 8: 2410-2423 |
|
GSE236641 |
| Jazaeri, Amir A et al. (2002) Gene expression profiles of BRCA1-linked, BRCA2-linked, and sporadic ovarian cancers.; J Natl Cancer Inst, 94: 990-1000 |
|
jazaeri-breast |
| Jean, Jyh-Chang et al. (2013) Transcription factor Klf4, induced in the lung by oxygen at birth, regulates perinatal fibroblast and myofibroblast differentiation.; PLoS One, 8: e54806 |
|
GSE4310 |
| Jeannot, Emmanuelle et al. (2012) Increased incidence of aflatoxin B1-induced liver tumors in hepatitis virus C transgenic mice.; Int J Cancer, [no vol.]: [no pages] |
|
GSE26838 |
| Jebbink, J M et al. (2015) Increased glucocerebrosidase expression and activity in preeclamptic placenta.; Placenta, 36: 160-9 |
|
GSE54618 |
| Jeffers, John R et al. (2021) The Common GermlineTP53-R337HMutation Is Hypomorphic and Confers Incomplete Penetrance and Late Tumor Onset in a Mouse Model.; Cancer Res, 81: 2442-2456 |
|
GSE166819 |
| Jeffrey, Kate L et al. (2006) Positive regulation of immune cell function and inflammatory responses by phosphatase PAC-1.; Nat Immunol, 7: 274-83 |
|
GSE3982 |
| Jeffs, Aaron R et al. (2009) A gene expression signature of invasive potential in metastatic melanoma cells.; PLoS One, 4: e8461 |
|
GSE16249 |
| Jeggari, Ashwini et al. (2018) EviNet: a web platform for network enrichment analysis with flexible definition of gene sets.; Nucleic Acids Res, 46: W163-W170 |
|
GSE112698 |
| Jelcick, Austin S et al. (2011) Genetic variations strongly influence phenotypic outcome in the mouse retina.; PLoS One, 6: e21858 |
|
GSE24512 |
| Jelicic, Katija et al. (2013) The HIV-1 envelope protein gp120 impairs B cell proliferation by inducing TGF-?1 production and FcRL4 expression.; Nat Immunol, 14: 1256-65 |
|
GSE49019 |
| Jelinsky, Scott A et al. (2011) Regulation of gene expression in human tendinopathy.; BMC Musculoskelet Disord, 12: 86 |
|
GSE26051 |
| Jen, Kuang-Yu et al. (2003) Transcriptional response of lymphoblastoid cells to ionizing radiation.; Genome Res, 13: 2092-100 |
|
GSE701 |
| Jena, Jayashree et al. (2023) GDF15 is required for cold-induced thermogenesis and contributes to improved systemic metabolic health following loss of OPA1 in brown adipocytes.; Elife, 12: [no pages] |
|
GSE218907 |
| Jensen, J M et al. (2012) Gene expression is differently affected by pimecrolimus and betamethasone in lesional skin of atopic dermatitis.; Allergy, 67: 413-23 |
|
GSE32473 |
| Jensen, Kristin et al. (2010) Striking decrease in the total precursor B-cell compartment during early childhood as evidenced by flow cytometry and gene expression changes.; Pediatr Hematol Oncol, 27: 31-45 |
|
GSE11504 |
| Jensen, Lasse D et al. (2019) Disruption of the Extracellular Matrix Progressively Impairs Central Nervous System Vascular Maturation Downstream of ?-Catenin Signaling.; Arterioscler Thromb Vasc Biol, 39: 1432-1447 |
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GSE66848 GSE77874 |
| Jensen, Samuel K et al. (2018) Multimodal Enhancement of Remyelination by Exercise with a Pivotal Role for Oligodendroglial PGC1?.; Cell Rep, 24: 3167-3179 |
|
GSE118592 |
| Jensen-Pergakes, Kristen et al. (2021) SAM Competitive PRMT5 Inhibitor PF-06939999 Demonstrates Antitumor Activity in Splicing Dysregulated NSCLC with Decreased Liability of Drug Resistance.; Mol Cancer Ther, [no vol.]: [no pages] |
|
GSE174615 |
| Jeon, Kilsoo et al. (2019) GLIS3 Transcriptionally Activates WNT Genes to Promote Differentiation of Human Embryonic Stem Cells into Posterior Neural Progenitors.; Stem Cells, 37: 202-215 |
|
GSE109562 |
| Jeon, Min-Tae et al. (2025) TNF-α-NF-κB activation through pathological α-Synuclein disrupts the BBB and exacerbates axonopathy.; Cell Rep, 44: 116001 |
|
GSE298722 |
| Jeon, Shin et al. (2025) The patient-specific mouse model with Foxg1 frameshift mutation provides insights into the pathophysiology of FOXG1 syndrome.; Nat Commun, 16: 4760 |
|
GSE225399 |
| Jeong, Angela et al. (2021) Protein farnesylation is upregulated in Alzheimer's human brains and neuron-specific suppression of farnesyltransferase mitigates pathogenic processes in Alzheimer's model mice.; Acta Neuropathol Commun, 9: 129 |
|
GSE174314 |
| Jeong, Heejin et al. (2016) High-resolution transcriptome analysis reveals neuropathic pain gene-expression signatures in spinal microglia after nerve injury.; Pain, 157: 964-76 |
|
GSE60670 |
| Jeong, Hyeonsoo et al. (2018) Gene Network Dysregulation in the Trigeminal Ganglia and Nucleus Accumbens of a Model of Chronic Migraine-Associated Hyperalgesia.; Front Syst Neurosci, 12: 63 |
|
GSE110194 |
| Jeong, Hyun-Woo et al. (2017) Transcriptional regulation of endothelial cell behavior during sprouting angiogenesis.; Nat Commun, 8: 726 |
|
GSE86788 |
| Jeong, Jae-Wook et al. (2005) Identification of murine uterine genes regulated in a ligand-dependent manner by the progesterone receptor.; Endocrinology, 146: 3490-505 |
|
GSE39920 |
| Jeong, Ji-Hoon et al. (2023) ZBTB7A suppresses glioblastoma tumorigenesis through the transcriptional repression of EPB41L5.; Exp Mol Med, 55: 43-54 |
|
GSE196320 |
| Jeong, Juhee et al. (2008) Dlx genes pattern mammalian jaw primordium by regulating both lower jaw-specific and upper jaw-specific genetic programs.; Development, 135: 2905-16 |
|
GSE4774 |
| Jepsen, Wayne M et al. (2021) Adenosine triphosphate binding cassette subfamily C member 1(ABCC1) overexpression reduces APP processing and increases alpha- versus beta-secretase activity,in vitro.; Biol Open, 10: [no pages] |
|
GSE164642 |
| Jereb, Saša et al. (2018) Differential 3' Processing of Specific Transcripts Expands Regulatory and Protein Diversity Across Neuronal Cell Types.; Elife, 7: [no pages] |
|
GSE108480 |
| Jermakowicz, Anna M et al. (2024) RAPID resistance to BET inhibitors is mediated by FGFR1 in glioblastoma.; Sci Rep, 14: 9284 |
|
GSE245624 |
| Jermakowicz, Walter J et al. (2019) Brainstem-Evoked Transcription of Defensive Genes After Spinal Cord Injury.; Front Cell Neurosci, 13: 510 |
|
GSE133093 |
| Jernås, Margareta et al. (2013) Differences in gene expression and cytokine levels between newly diagnosed and chronic pediatric ITP.; Blood, [no vol.]: [no pages] |
|
GSE46922 |
| Jernås, Margareta et al. (2013) MicroRNA regulate immune pathways in T-cells in multiple sclerosis (MS).; BMC Immunol, 14: 32 |
|
GSE43591 |
| Jerome, Andrew D et al. (2023) Cytokine polarized, alternatively activated bone marrow neutrophils drive axon regeneration.; Res Sq, [no vol.]: [no pages] |
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GSE244934.1 GSE244934.2 |
| Jeruschke, Stefanie et al. (2015) Everolimus Stabilizes Podocyte Microtubules via Enhancing TUBB2B and DCDC2 Expression.; PLoS One, 10: e0137043 |
|
GSE66107 |
| Jeselsohn, Rinath et al. (2017) Embryonic transcription factor SOX9 drives breast cancer endocrine resistance.; Proc Natl Acad Sci U S A, 114: E4482-E4491 |
|
GSE86538 |
| Jeselsohn, Rinath et al. (2018) Allele-Specific Chromatin Recruitment and Therapeutic Vulnerabilities of ESR1 Activating Mutations.; Cancer Cell, 33: 173-186.e5 |
|
GSE94493 |
| Jesus, Alexandra N Boix De et al. (2023) Increased Expression of the Δ133p53β Isoform Enhances Brain Metastasis.; Int J Mol Sci, 24: [no pages] |
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GSE221282 |
| Jeter, Collene R et al. (2015) NANOG reprograms prostate cancer cells to castration resistance via dynamically repressing and engaging the AR/FOXA1 signaling axis.; Cell Discov, 2: 16041 |
|
GSE74798 |
| Jethwa, Alexander et al. (2018) TRRAP is essential for regulating the accumulation of mutant and wild-type p53 in lymphoma.; Blood, 131: 2789-2802 |
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GSE103915 |
| Jevsek, Marko et al. (2006) CD24 is expressed by myofiber synaptic nuclei and regulates synaptic transmission.; Proc Natl Acad Sci U S A, 103: 6374-9 |
|
GSE2873 |
| Jeyachandran, Arjit Vijey et al. (2025) Differential tropisms of old and new world hantaviruses influence virulence and developing host-directed antiviral candidates.; PLoS Pathog, 21: e1013401 |
|
GSE232641 |
| Jha, Mithilesh Kumar et al. (2025) Type 2 cytokines pleiotropically modulate sensory nerve architecture and neuroimmune interactions to mediate itch.; J Allergy Clin Immunol, [no vol.]: [no pages] |
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GSE296778 GSE296776 |
| Jha, Pooja et al. (2018) Genetic Regulation of Plasma Lipid Species and Their Association with Metabolic Phenotypes.; Cell Syst, 6: 709-721.e6 |
|
GSE79016 |
| Jha, Ruchira M et al. (2024) A single-cell atlas deconstructs heterogeneity across multiple models in murine traumatic brain injury and identifies novel cell-specific targets.; Neuron, 112: 3069-3088.e4 |
|
GSE269748.3 GSE269748.4 GSE269748.1 GSE269748.2 |
| Jhanji, Megha et al. (2025) Tyrosine and Phenylalanine Activate Neuronal DNA Repair but Exhibit Opposing Effects on Global Transcription and Adult Female Mice Are Resilient to TyrRS/YARS1 Depletion.; IUBMB Life, 77: e70030 |
|
GSE227181 |
| Jhavar, Sameer et al. (2009) Integration of ERG gene mapping and gene-expression profiling identifies distinct categories of human prostate cancer.; BJU Int, 103: 1256-69 |
|
GSE12378 |
| Jhaveri, Dhanisha J et al. (2015) Purification of neural precursor cells reveals the presence of distinct, stimulus-specific subpopulations of quiescent precursors in the adult mouse hippocampus.; J Neurosci, 35: 8132-44 |
|
GSE67304 |
| Jhawar, Sachin et al. (2014) Functional genomic analysis identifies indoxyl sulfate as a major, poorly dialyzable uremic toxin in end-stage renal disease.; PLoS One, 10: e0118703 |
|
GSE45709 |
| Ji, Chenhui et al. (2023) Glutaminase 1 deficiency confined in forebrain neurons causes autism spectrum disorder-like behaviors.; Cell Rep, 42: 112712 |
|
GSE233221 GSE233639 |
| Ji, Hao-Nan et al. (2025) Dysregulated ac4C modification of mRNA in a mouse model of early-stage Alzheimer's disease.; Cell Biosci, 15: 45 |
|
GSE286035 GSE281343 |
| Ji, Hong et al. (2010) Comprehensive methylome map of lineage commitment from haematopoietic progenitors.; Nature, 467: 338-42 |
|
GSE20244 |
| Ji, Hongbin et al. (2007) LKB1 modulates lung cancer differentiation and metastasis.; Nature, 448: 807-10 |
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GSE6135.1 GSE6135.2 |
| Ji, Honglei et al. (2023) Development of a peptide drug restoring AMPK and adipose tissue functionality in cancer cachexia.; Mol Ther, 31: 2408-2421 |
|
GSE235940 |
| Ji, Kaiyuan et al. (2023) Retinoic acid receptor gamma is required for proliferation of pancreatic cancer cells.; Cell Biol Int, 47: 144-155 |
|
GSE197499 |
| Ji, Yewei et al. (2012) Activation of natural killer T cells promotes M2 Macrophage polarization in adipose tissue and improves systemic glucose tolerance via interleukin-4 (IL-4)/STAT6 protein signaling axis in obesity.; J Biol Chem, 287: 13561-71 |
|
GSE36032 |
| Ji, Yiyi et al. (2023) Repurposing ketotifen as a therapeutic strategy for neuroendocrine prostate cancer by targeting the IL-6/STAT3 pathway.; Cell Oncol (Dordr), 46: 1445-1456 |
|
GSE225007 |
| Ji, Yiyi et al. (2023) The ELAVL3/MYCN positive feedback loop provides a therapeutic target for neuroendocrine prostate cancer.; Nat Commun, 14: 7794 |
|
GSE224909 GSE222469 |
| Ji, Zhe et al. (2016) Transcriptome-scale RNase-footprinting of RNA-protein complexes.; Nat Biotechnol, 34: 410-3 |
|
GSE65885.1 |
| Jia, Hao et al. (2023) The role of altered lipid composition and distribution in liver fibrosis revealed by multimodal nonlinear optical microscopy.; Sci Adv, 9: eabq2937 |
|
GSE220856 |
| Jia, Hu-Liang et al. (2007) Gene expression profiling reveals potential biomarkers of human hepatocellular carcinoma.; Clin Cancer Res, 13: 1133-9 |
|
GSE5975 |
| Jia, Kangni et al. (2024) RNA Helicase DDX5 Maintains Cardiac Function by RegulatingCamkIIδAlternative Splicing.; Circulation, 150: 1121-1139 |
|
GSE248443 |
| Jia, Li et al. (2009) Retinoid-related orphan nuclear receptor RORbeta is an early-acting factor in rod photoreceptor development.; Proc Natl Acad Sci U S A, 106: 17534-9 |
|
GSE16585 |
| Jia, Meng et al. (2023) Targeting RNA oxidation by ISG20-mediated degradation is a potential therapeutic strategy for acute kidney injury.; Mol Ther, [no vol.]: [no pages] |
|
GSE226275 |
| Jia, Mengxian et al. (2026) TIA1-mediated stress granules inhibit the neuroinflammation and neurodegeneration after spinal cord injury through LCN2 signaling.; Cell Mol Life Sci, 83: [no pages] |
|
GSE268047 |
| Jia, Pan et al. (2021) ZMYND8 mediated liquid condensates spatiotemporally decommission the latent super-enhancers during macrophage polarization.; Nat Commun, 12: 6535 |
|
GSE169470.1 |
| Jia, Qianhan et al. (2025) Thapsigargin suppresses porcine hemagglutinating encephalomyelitis virus replication by disrupting host energy metabolism.; Virol Sin, 40: 989-1001 |
|
GSE246447 |
| Jia, Shiqi et al. (2015) Insm1 cooperates with Neurod1 and Foxa2 to maintain mature pancreatic ?-cell function.; EMBO J, 34: 1417-33 |
|
GSE54044 |
| Jia, Shuai et al. (2026) Müllerian duct maintenance at the cranial region is promoted byGata2.; bioRxiv, [no vol.]: [no pages] |
|
GSE324404 |
| Jia, Shuang et al. (2011) Use of transcriptional signatures induced in lymphoid and myeloid cell lines as an inflammatory biomarker in Type 1 diabetes.; Physiol Genomics, 43: 697-709 |
|
GSE24147 |
| Jia, Si-Qi et al. (2022) The BRD4 Inhibitor dBET57 Exerts Anticancer Effects by Targeting Superenhancer-Related Genes in Neuroblastoma.; J Immunol Res, 2022: 7945884 |
|
GSE208184 |
| Jia, Yachun et al. (2023) PRMT1 methylation of WTAP promotes multiple myeloma tumorigenesis by activating oxidative phosphorylation via m6A modification of NDUFS6.; Cell Death Dis, 14: 512 |
|
GSE235403 |
| Jia, Yanfei et al. (2022) Immune infiltration in aggressive papillary craniopharyngioma: High infiltration but low action.; Front Immunol, 13: 995655 |
|
GSE216330 |
| Jiang, Bao-Chun et al. (2022) NFAT1 Orchestrates Spinal Microglial Transcription and Promotes Microglial Proliferation via c-MYC Contributing to Nerve Injury-Induced Neuropathic Pain.; Adv Sci (Weinh), 9: e2201300 |
|
GSE184052 |
| Jiang, Bo et al. (2024) MiR-204-5p may regulate oxidative stress in myopia.; Sci Rep, 14: 9770 |
|
GSE253960 |
| Jiang, Dewei et al. (2015) Alteration in 5-hydroxymethylcytosine-mediated epigenetic regulation leads to Purkinje cell vulnerability in ATM deficiency.; Brain, 138: 3520-36 |
|
GSE61019 |
| Jiang, Dongya et al. (2024) LOX-mediated ECM mechanical stress induces Piezo1 activation in hypoxic-ischemic brain damage and identification of novel inhibitor of LOX.; Redox Biol, 76: 103346 |
|
GSE270560 |
| Jiang, Fang-Xu et al. (2017) Differentiation of Islet Progenitors Regulated by Nicotinamide into Transcriptome-Verified β Cells That Ameliorate Diabetes.; Stem Cells, 35: 1341-1354 |
|
GSE51944 |
| Jiang, Han et al. (2021) Immune Phenotyping of Patients With Acute Vogt-Koyanagi-Harada Syndrome Before and After Glucocorticoids Therapy.; Front Immunol, 12: 659150 |
|
GSE166663 |