List of all 21,933 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Johann, Lisa et al. (2023) A20 regulates lymphocyte adhesion in murine neuroinflammation by restricting endothelial ICOSL expression in the CNS.; J Clin Invest, 133: [no pages] |
|
GSE221318 |
| Johanns, Tanner M et al. (2024) Integrating multisector molecular characterization into personalized peptide vaccine design for patients with newly diagnosed glioblastoma.; Clin Cancer Res, [no vol.]: [no pages] |
|
GSE237936 |
| Johansson, Helena Morales et al. (2014) Whole-genome analysis of temporal gene expression during early transdifferentiation of human lung alveolar epithelial type 2 cells in vitro.; PLoS One, 9: e93413 |
|
GSE40516 |
| Johansson, Ida et al. (2012) Gene expression profiling of primary male breast cancers reveals two unique subgroups and identifies N-acetyltransferase-1 (NAT1) as a novel prognostic biomarker.; Breast Cancer Res, 14: R31 |
|
GSE31259 |
| Johansson, Jenny U et al. (2014) Prostaglandin signaling suppresses beneficial microglial function in Alzheimer's disease models.; J Clin Invest, 125: 350-64 |
|
GSE57181 |
| Johansson, Peter et al. (2007) Confirmation of a BRAF mutation-associated gene expression signature in melanoma.; Pigment Cell Res, 20: 216-21 |
|
GSE7127 |
| Johansson, Pia A et al. (2013) The transcription factor Otx2 regulates choroid plexus development and function.; Development, 140: 1055-66 |
|
GSE27630 |
| John Lin, Chia-Ching et al. (2017) Identification of diverse astrocyte populations and their malignant analogs.; Nat Neurosci, 20: 396-405 |
|
GSE72826 |
| Johns, Eleanor et al. (2024) The lipid droplet protein DHRS3 is a regulator of melanoma cell state.; bioRxiv, [no vol.]: [no pages] |
|
GSE262095 |
| Johnsen, Erik O et al. (2018) Proliferative Cells Isolated from the Adult Human Peripheral Retina only Transiently Upregulate Key Retinal Markers upon Induced Differentiation.; Curr Eye Res, 43: 340-349 |
|
GSE103399 |
| Johnson, Anthony C et al. (2024) GSTM1null genotype underpins recurrence ofNF2meningiomas.; Front Oncol, 14: 1506708 |
|
GSE283616 |
| Johnson, Brian P et al. (2014) Hepatocyte circadian clock controls acetaminophen bioactivation through NADPH-cytochrome P450 oxidoreductase.; Proc Natl Acad Sci U S A, 111: 18757-62 |
|
GSE34444 |
| Johnson, Brian S et al. (2017) Biotin tagging of MeCP2 in mice reveals contextual insights into the Rett syndrome transcriptome.; Nat Med, 23: 1203-1214 |
|
GSE83474 |
| Johnson, Eric N et al. (2004) Neuromedin U elicits cytokine release in murine Th2-type T cell clone D10.G4.1.; J Immunol, 173: 7230-8 |
|
GSE1791 |
| Johnson, Fraser D et al. (2022) Characterization of a small molecule inhibitor of disulfide reductases that induces oxidative stress and lethality in lung cancer cells.; Cell Rep, 38: 110343 |
|
GSE178311 |
| Johnson, Jason M et al. (2003) Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays.; Science, 302: 2141-4 |
|
GSE740 |
| Johnson, Jennifer et al. (2015) Genomic profiling of a Hepatocyte growth factor-dependent signature for MET-targeted therapy in glioblastoma.; J Transl Med, 13: 306 |
|
GSE64667.2 GSE64667.1 |
| Johnson, Julie K et al. (2012) The application of nonsense-mediated mRNA decay inhibition to the identification of breast cancer susceptibility genes.; BMC Cancer, 12: 246 |
|
GSE37210 |
| Johnson, Kamin J et al. (2020) Dioxin male rat reproductive toxicity mode of action and relative potency of 2,3,7,8-tetrachlorodibenzo-p-dioxin and 2,3,7,8-tetrachlorodibenzofuran characterized by fetal pituitary and testis transcriptome profiling.; Reprod Toxicol, 93: 146-162 |
|
GSE128824 |
| Johnson, Kirby D et al. (2012) Cis-element mutated in GATA2-dependent immunodeficiency governs hematopoiesis and vascular integrity.; J Clin Invest, 122: 3692-704 |
|
GSE39300 |
| Johnson, Laura L et al. (2024) Nystagmus in the B6(CG)Tyr(c-2J)/J Albino Mouse: A Functional and RNA-Seq Analysis.; Invest Ophthalmol Vis Sci, 65: 26 |
|
GSE245207 |
| Johnson, Magen M et al. (2011) The Transcription Factor NURR1 Exerts Concentration-Dependent Effects on Target Genes Mediating Distinct Biological Processes.; Front Neurosci, 5: 135 |
|
GSE33434 |
| Johnson, Margaret et al. (2023) Advanced Age in Humans and Mouse Models of Glioblastoma Show Decreased Survival from Extratumoral Influence.; Clin Cancer Res, 29: 4973-4989 |
|
GSE214294 |
| Johnson, Matthew B et al. (2009) Functional and evolutionary insights into human brain development through global transcriptome analysis.; Neuron, 62: 494-509 |
|
GSE13344.1 |
| Johnson, Matthew B et al. (2015) Single-cell analysis reveals transcriptional heterogeneity of neural progenitors in human cortex.; Nat Neurosci, 18: 637-46 |
|
GSE66217 |
| Johnson, Matthew J et al. (2012) Type I IFN induced by adenovirus serotypes 28 and 35 has multiple effects on T cell immunogenicity.; J Immunol, 188: 6109-18 |
|
GSE37128 |
| Johnson, Michael R et al. (2015) Systems genetics identifies Sestrin 3 as a regulator of a proconvulsant gene network in human epileptic hippocampus.; Nat Commun, 6: 6031 |
|
GSE63808 |
| Johnson, Michelle H et al. (2016) Alcohol-free fermented blueberry-blackberry beverage phenolic extract attenuates diet-induced obesity and blood glucose in C57BL/6J mice.; J Nutr Biochem, 31: 45-59 |
|
GSE74008 |
| Johnson, Nicole V et al. (2012) Haplotype Association Mapping Identifies a Candidate Gene Region in Mice Infected With Staphylococcus aureus.; G3 (Bethesda), 2: 693-700 |
|
GSE23584 |
| Johnson, Raymond M et al. (2015) Modeling the transcriptome of genital tract epithelial cells and macrophages in healthy mucosa versus mucosa inflamed by Chlamydia muridarum infection.; Pathog Dis, 73: ftv100 |
|
GSE74317 |
| Johnson, Thomas G et al. (2020) YB-1 Knockdown Inhibits the Proliferation of Mesothelioma Cells through Multiple Mechanisms.; Cancers (Basel), 12: [no pages] |
|
GSE153368 |
| Johnson, Travis S et al. (2024) 1q amplification and PHF19 expressing high-risk cells are associated with relapsed/refractory multiple myeloma.; Nat Commun, 15: 4144 |
|
GSE254307 |
| Johnson, Zachary et al. (2023) Dynamics of RNA m5C modification during brain development.; Genomics, 115: 110604 |
|
GSE207092 |
| Johnson-Huang, Leanne M et al. (2012) A single intradermal injection of IFN-? induces an inflammatory state in both non-lesional psoriatic and healthy skin.; J Invest Dermatol, 132: 1177-87 |
|
GSE32407 |
| Johnston, A et al. (2014) Early tissue responses in psoriasis to the antitumour necrosis factor-α biologic etanercept suggest reduced interleukin-17 receptor expression and signalling.; Br J Dermatol, 171: 97-107 |
|
GSE47751 |
| Johnston, Adam P W et al. (2016) Dedifferentiated Schwann Cell Precursors Secreting Paracrine Factors Are Required for Regeneration of the Mammalian Digit Tip.; Cell Stem Cell, 19: 433-448 |
|
GSE81703 GSE81697 |
| Johnston, Daniel S et al. (2008) Stage-specific gene expression is a fundamental characteristic of rat spermatogenic cells and Sertoli cells.; Proc Natl Acad Sci U S A, 105: 8315-20 |
|
GSE8978 |
| Johnstone, Andrea L et al. (2012) A chemical genetic approach identifies piperazine antipsychotics as promoters of CNS neurite growth on inhibitory substrates.; Mol Cell Neurosci, 50: 125-35 |
|
GSE34331 |
| Johnstone, Timothy B et al. (2018) PDE8 Is Expressed in Human Airway Smooth Muscle and Selectively Regulates cAMP Signaling by β2-Adrenergic Receptors and Adenylyl Cyclase 6.; Am J Respir Cell Mol Biol, 58: 530-541 |
|
GSE58434 |
| Jokic, Natasa et al. (2010) The human G93A-SOD1 mutation in a pre-symptomatic rat model of amyotrophic lateral sclerosis increases the vulnerability to a mild spinal cord compression.; BMC Genomics, 11: 633 |
|
GSE22161 |
| Jokubaitis, Vilija G et al. (2013) Endogenously regulated Dab2 worsens inflammatory injury in experimental autoimmune encephalomyelitis.; Acta Neuropathol Commun, 1: 32 |
|
GSE44989 |
| Jolly, Robert A et al. (2005) Pooling samples within microarray studies: a comparative analysis of rat liver transcription response to prototypical toxicants.; Physiol Genomics, 22: 346-55 |
|
GSE2303 |
| Joly, Amélie et al. (2025) Liver FGF21 mediates sex-specific adaptation to juvenile protein malnutrition; bioRxiv, [no vol.]: [no pages] |
|
GSE302336 |
| Jonas, Anna et al. (2014) Axonally derived matrilin-2 induces proinflammatory responses that exacerbate autoimmune neuroinflammation.; J Clin Invest, 124: 5042-56 |
|
GSE47900 |
| Jonczyk, Magda S et al. (2014) Genetic factors regulating lung vasculature and immune cell functions associate with resistance to pneumococcal infection.; PLoS One, 9: e89831 |
|
GSE49533 |
| Jones, Calley J et al. (2021) Development and Characterization of Novel Endoxifen-Resistant Breast Cancer Cell Lines Highlight Numerous Differences from Tamoxifen-Resistant Models.; Mol Cancer Res, 19: 1026-1039 |
|
GSE164529 |
| Jones, Dominic et al. (2019) The Histone Demethylase Enzymes KDM3A and KDM4B Co-Operatively Regulate Chromatin Transactions of the Estrogen Receptor in Breast Cancer.; Cancers (Basel), 11: [no pages] |
|
GSE124270 |
| Jones, Jill K et al. (2023) ABL1 and ABL2 promote medulloblastoma leptomeningeal dissemination.; Neurooncol Adv, 5: vdad095 |
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GSE224691 |
| Jones, Jon et al. (2005) Gene signatures of progression and metastasis in renal cell cancer.; Clin Cancer Res, 11: 5730-9 |
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GSE15641 |
| Jones, Mattson S O et al. (2025) The transcriptomic signature of DEPDC5 KO induced mTOR hyperactivation in human neurons and its response to rapamycin treatment.; Epilepsia, 66: 4538-4553 |
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GSE240337 |
| Jones, Michael H et al. (2004) Two prognostically significant subtypes of high-grade lung neuroendocrine tumours independent of small-cell and large-cell neuroendocrine carcinomas identified by gene expression profiles.; Lancet, 363: 775-81 |
|
GSE1037 |
| Jones, Sara K et al. (2022) Transgenerational transmission of aspartame-induced anxiety and changes in glutamate-GABA signaling and gene expression in the amygdala.; Proc Natl Acad Sci U S A, 119: e2213120119 |
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GSE210561 |
| Jones, Steven P et al. (2025) Exercise sensitizes the pressure diuresis response: shifting immune landscapes may underlie renal adaptations.; Am J Physiol Renal Physiol, 329: F362-F373 |
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GSE297842 |
| Jones-Tabah, Jace et al. (2022) A role for BET proteins in regulating basal, dopamine-induced and cAMP/PKA-dependent transcription in rat striatal neurons.; Cell Signal, 91: 110226 |
|
GSE179370 |
| Jonker, Johan W et al. (2012) A PPAR?-FGF1 axis is required for adaptive adipose remodelling and metabolic homeostasis.; Nature, [no vol.]: [no pages] |
|
GSE31692 |
| Jonker, Martijs J et al. (2013) Life spanning murine gene expression profiles in relation to chronological and pathological aging in multiple organs.; Aging Cell, [no vol.]: [no pages] |
|
GSE34378 |
| Jonkhout, Nicky et al. (2021) Subcellular relocalization and nuclear redistribution of the RNA methyltransferases TRMT1 and TRMT1L upon neuronal activation.; RNA Biol, [no vol.]: 1-15 |
|
GSE156858 |
| Jonnakuti, Venkata Soumith et al. (2023) NUDT21 alters glioma migration through differential alternative polyadenylation of LAMC1.; J Neurooncol, 163: 623-634 |
|
GSE230769 |
| Jonnalagadda, Deepa et al. (2023) FTY720 requires vitamin B12-TCN2-CD320 signaling in astrocytes to reduce disease in an animal model of multiple sclerosis.; Cell Rep, 42: 113545 |
|
GSE99114 |
| Jonsdottir, Kristin et al. (2014) Prognostic value of gene signatures and proliferation in lymph-node-negative breast cancer.; PLoS One, 9: e90642 |
|
GSE46563 |
| Joo, Kyeung Min et al. (2013) Patient-specific orthotopic glioblastoma xenograft models recapitulate the histopathology and biology of human glioblastomas in situ.; Cell Rep, 3: 260-73 |
|
GSE42669 |
| Joo, Yuyoung et al. (2020) Topoisomerase 3β knockout mice show transcriptional and behavioural impairments associated with neurogenesis and synaptic plasticity.; Nat Commun, 11: 3143 |
|
GSE145730 |
| Jordan, ChaRandle et al. (2007) Cerebellar gene expression profiles of mouse models for Rett syndrome reveal novel MeCP2 targets.; BMC Med Genet, 8: 36 |
|
GSE8774 |
| Jordan, Sean C et al. (2025) Biomarkers of immune dysregulation and posttreatment inflammation in spinal muscular atrophy.; Proc Natl Acad Sci U S A, 122: e2506976122 |
|
GSE290216.2 |
| Jordheim, Lars Petter et al. (2011) Sensitivity and gene expression profile of fresh human acute myeloid leukemia cells exposed ex vivo to AS602868.; Cancer Chemother Pharmacol, 68: 97-105 |
|
GSE19853 |
| Jorgensen, Ellen et al. (2008) Cigarette smoke induces endoplasmic reticulum stress and the unfolded protein response in normal and malignant human lung cells.; BMC Cancer, 8: 229 |
|
GSE10700 GSE10718 |
| Jorissen, Robert N et al. (2008) DNA copy-number alterations underlie gene expression differences between microsatellite stable and unstable colorectal cancers.; Clin Cancer Res, 14: 8061-9 |
|
GSE13294 GSE13067 |
| Jorissen, Robert N et al. (2009) Metastasis-Associated Gene Expression Changes Predict Poor Outcomes in Patients with Dukes Stage B and C Colorectal Cancer.; Clin Cancer Res, 15: 7642-7651 |
|
GSE14333 |
| Joruiz, Sebastien M et al. (2024) Distinct functions of wild-type and R273H mutant Δ133p53α differentially regulate glioblastoma aggressiveness and therapy-induced senescence.; Cell Death Dis, 15: 454 |
|
GSE240377 |
| Joseph, Diya B et al. (2019) A folic acid-enriched diet attenuates prostate involution in response to androgen deprivation.; Prostate, 79: 183-194 |
|
GSE116299 |
| Joseph, Donald J et al. (2021) PostnatalArxtranscriptional activity regulates functional properties of PV interneurons.; iScience, 24: 101999 |
|
GSE157689 |
| Joshi, Radhika et al. (2024) Comparison of the Genomic Activity of an EP4-Receptor and β2-Adrenoceptor Agonist in BEAS-2B Human Bronchial Epithelial Cells: In Search of Compartmentalized, cAMP-Dependent Gene Expression.; J Pharmacol Exp Ther, 391: 64-81 |
|
GSE267218 |
| Joshi, Shweta et al. (2019) SF2523: Dual PI3K/BRD4 Inhibitor Blocks Tumor Immunosuppression and Promotes Adaptive Immune Responses in Cancer.; Mol Cancer Ther, 18: 1036-1044 |
|
GSE123154 |
| Joshi, Sonal et al. (2024) Tim4 enables large peritoneal macrophages to cross-present tumor antigens at early stages of tumorigenesis.; Cell Rep, 43: 114096 |
|
GSE242989 |
| Joshi, Sunil et al. (2012) Apocynin-treatment reverses hyperoxaluria induced changes in NADPH oxidase system expression in rat kidneys: a transcriptional study.; PLoS One, 7: e47738 |
|
GSE36446 |
| Joshi, Taruna et al. (2017) GS-5759, a Bifunctional ?2-Adrenoceptor Agonist and Phosphodiesterase 4 Inhibitor for Chronic Obstructive Pulmonary Disease with a Unique Mode of Action: Effects on Gene Expression in Human Airway Epithelial Cells.; J Pharmacol Exp Ther, 360: 324-340 |
|
GSE84880 |
| Josset, Laurence et al. (2012) Implication of inflammatory macrophages, nuclear receptors, and interferon regulatory factors in increased virulence of pandemic 2009 H1N1 influenza A virus after host adaptation.; J Virol, 86: 7192-206 |
|
GSE36328 |
| Josset, Laurence et al. (2013) Cell host response to infection with novel human coronavirus EMC predicts potential antivirals and important differences with SARS coronavirus.; MBio, 4: [no pages] |
|
GSE45042 |
| Josset, Laurence et al. (2014) Annotation of long non-coding RNAs expressed in collaborative cross founder mice in response to respiratory virus infection reveals a new class of interferon-stimulated transcripts.; RNA Biol, 11: 875-90 |
|
GSE55480 GSE53057 |
| Jost, K Laurence et al. (2015) Gene repositioning within the cell nucleus is not random and is determined by its genomic neighborhood.; Epigenetics Chromatin, 8: 36 |
|
GSE69087 |
| Jostes, Sina et al. (2017) The bromodomain inhibitor JQ1 triggers growth arrest and apoptosis in testicular germ cell tumours in vitro and in vivo.; J Cell Mol Med, 21: 1300-1314 |
|
GSE87477 |
| Jouffe, Céline et al. (2013) The circadian clock coordinates ribosome biogenesis.; PLoS Biol, 11: e1001455 |
|
GSE33726 |
| Jouffe, Céline et al. (2022) Disruption of the circadian clock component BMAL1 elicits an endocrine adaption impacting on insulin sensitivity and liver disease.; Proc Natl Acad Sci U S A, 119: e2200083119 |
|
GSE190221 GSE150102 |
| Joulia, Emeline et al. (2024) Eomes-dependent mitochondrial regulation promotes survival of pathogenic CD4+ T cells during inflammation.; J Exp Med, 221: [no pages] |
|
GSE247862 |
| Joung, Julia et al. (2023) A transcription factor atlas of directed differentiation.; Cell, 186: 209-229.e26 |
|
GSE216479 |
| Journo, Shani et al. (2022) Genomic alterations drive metastases formation in pancreatic ductal adenocarcinoma cancer: deciphering the role of CDKN2A and CDKN2B in mediating liver tropism.; Oncogene, 41: 1468-1481 |
|
GSE154492 |
| Jouroukhin, Yan et al. (2019) Adolescent ?9-Tetrahydrocannabinol Exposure and Astrocyte-Specific Genetic Vulnerability Converge on Nuclear Factor-?B-Cyclooxygenase-2 Signaling to Impair Memory in Adulthood.; Biol Psychiatry, 85: 891-903 |
|
GSE116813 |
| Joutsen, Jenny et al. (2020) Heat Shock Factor 2 Protects against Proteotoxicity by Maintaining Cell-Cell Adhesion.; Cell Rep, 30: 583-597.e6 |
|
GSE115973 |
| Jovasevic, Vladimir et al. (2021) Primary cilia are required for the persistence of memory and stabilization of perineuronal nets.; iScience, 24: 102617 |
|
GSE174076 |
| Jönsson, Göran et al. (2010) Gene expression profiling-based identification of molecular subtypes in stage IV melanomas with different clinical outcome.; Clin Cancer Res, 16: 3356-67 |
|
GSE22154 GSE22153 |
| Jönsson, Marie E et al. (2015) Comprehensive analysis of microRNA expression in regionalized human neural progenitor cells reveals microRNA-10 as a caudalizing factor.; Development, 142: 3166-77 |
|
GSE71204 |
| Jönsson, Marie E et al. (2019) Activation of neuronal genes via LINE-1 elements upon global DNA demethylation in human neural progenitors.; Nat Commun, 10: 3182 |
|
GSE107580 |
| Jörg, Lisa Mirja et al. (2024) Transcription Factors Sox8 and Sox10 Contribute with Different Importance to the Maintenance of Mature Oligodendrocytes.; Int J Mol Sci, 25: [no pages] |
|
GSE269122 |