List of all 21,933 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Joy, Mary T et al. (2024) Activity-dependent transcriptional programs in memory regulate motor recovery after stroke.; Commun Biol, 7: 1048 |
|
GSE270766 |
| Joyce, Susan A et al. (2014) Regulation of host weight gain and lipid metabolism by bacterial bile acid modification in the gut.; Proc Natl Acad Sci U S A, 111: 7421-6 |
|
GSE46952 |
| Joyner, Chester J et al. (2022) Generation of human long-lived plasma cells by developmentally regulated epigenetic imprinting.; Life Sci Alliance, 5: [no pages] |
|
GSE190693 |
| Jozefczuk, Justyna et al. (2011) Comparative analysis of human embryonic stem cell and induced pluripotent stem cell-derived hepatocyte-like cells reveals current drawbacks and possible strategies for improved differentiation.; Stem Cells Dev, 20: 1259-75 |
|
GSE25744 |
| Ju, Jun et al. (2021) Structural and Lipidomic Alterations of Striatal Myelin in 16p11.2 Deletion Mouse Model of Autism Spectrum Disorder.; Front Cell Neurosci, 15: 718720 |
|
GSE179056 |
| Ju, Limei et al. (2013) SMC6 is an essential gene in mice, but a hypomorphic mutant in the ATPase domain has a mild phenotype with a range of subtle abnormalities.; DNA Repair (Amst), 12: 356-66 |
|
GSE38737 |
| Ju, Peijun et al. (2025) Ephrin-B2 deletion in GABAergic neurons induces cognitive deficits associated with single-nucleus transcriptomic differences in the prefrontal cortex.; BMC Biol, 23: 242 |
|
GSE297542 |
| Ju, Yeon Ha et al. (2022) Astrocytic urea cycle detoxifies Aβ-derived ammonia while impairing memory in Alzheimer's disease.; Cell Metab, 34: 1104-1120.e8 |
|
GSE185916 |
| Juan-Mateu, Jonàs et al. (2023) Pancreatic microexons regulate islet function and glucose homeostasis.; Nat Metab, 5: 219-236 |
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GSE198906.1 GSE198906.3 GSE198906.2 |
| Jubierre, L et al. (2016) BRG1/SMARCA4 is essential for neuroblastoma cell viability through modulation of cell death and survival pathways.; Oncogene, [no vol.]: [no pages] |
|
GSE74622 |
| Judson, Marc A et al. (2012) Molecular profiling and gene expression analysis in cutaneous sarcoidosis: the role of interleukin-12, interleukin-23, and the T-helper 17 pathway.; J Am Acad Dermatol, 66: 901-910.e2 |
|
GSE32887 |
| Juel, Helene B et al. (2012) Chemokine expression in retinal pigment epithelial ARPE-19 cells in response to coculture with activated T cells.; Invest Ophthalmol Vis Sci, 53: 8472-80 |
|
GSE36331 |
| Juhasz, Agnes et al. (2017) NADPH oxidase 1 supports proliferation of colon cancer cells by modulating reactive oxygen species-dependent signal transduction.; J Biol Chem, 292: 7866-7887 |
|
GSE4561 |
| Juknat, Ana et al. (2013) Microarray and pathway analysis reveal distinct mechanisms underlying cannabinoid-mediated modulation of LPS-induced activation of BV-2 microglial cells.; PLoS One, 8: e61462 |
|
GSE70689 |
| Juliandi, Berry et al. (2015) Reduced Adult Hippocampal Neurogenesis and Cognitive Impairments following Prenatal Treatment of the Antiepileptic Drug Valproic Acid.; Stem Cell Reports, 5: 996-1009 |
|
GSE42904 |
| Julià, Antonio et al. (2009) An eight-gene blood expression profile predicts the response to infliximab in rheumatoid arthritis.; PLoS One, 4: e7556 |
|
GSE12051 |
| Julià, Antonio et al. (2009) Identification of candidate genes for rituximab response in rheumatoid arthritis patients by microarray expression profiling in blood cells.; Pharmacogenomics, 10: 1697-708 |
|
GSE15316 |
| Junes-Gill, Katiana S et al. (2014) Human Hematopoietic Signal peptide-containing Secreted 1 (hHSS1) modulates genes and pathways in glioma: implications for the regulation of tumorigenicity and angiogenesis.; BMC Cancer, 14: 920 |
|
GSE61780 |
| Jung, Hwajin et al. (2018) Sexually dimorphic behavior, neuronal activity, and gene expression in Chd8-mutant mice.; Nat Neurosci, 21: 1218-1228 |
|
GSE87370 |
| Jung, Hyuncheol et al. (2022) Anti-inflammatory clearance of amyloid-β by a chimeric Gas6 fusion protein.; Nat Med, 28: 1802-1812 |
|
GSE183757 |
| Jung, Kwang Bo et al. (2019) Blockade of STAT3 Causes Severe In Vitro and In Vivo Maturation Defects in Intestinal Organoids Derived from Human Embryonic Stem Cells.; J Clin Med, 8: [no pages] |
|
GSE132561 |
| Jung, Myunghwan et al. (2018) Global gene-expression profiles of intracellular survival of the BruAb2_1031 gene mutated Brucella abortus in professional phagocytes, RAW 264.7 cells.; BMC Microbiol, 18: 82 |
|
GSE79264 |
| Jung, Sunhee et al. (2025) Dietary fibre-adapted gut microbiome clears dietary fructose and reverses hepatic steatosis.; Nat Metab, 7: 1801-1818 |
|
GSE268945 |
| Jung, Yonwoo et al. (2016) An epigenetic mechanism mediates developmental nicotine effects on neuronal structure and behavior.; Nat Neurosci, 19: 905-14 |
|
GSE80789.2 |
| Jung, Yooju et al. (2022) Upregulation of SNAP25 by HDAC inhibition ameliorates Niemann-Pick Type C disease phenotypes via autophagy induction.; Clin Transl Med, 12: e776 |
|
GSE185644 |
| Junker, Jan Philipp et al. (2014) Genome-wide RNA Tomography in the zebrafish embryo.; Cell, 159: 662-75 |
|
GSE59873.2 |
| Junqueira Alves, Chrystian et al. (2021) Plexin-B2 orchestrates collective stem cell dynamics via actomyosin contractility, cytoskeletal tension and adhesion.; Nat Commun, 12: 6019 |
|
GSE158017 |
| Jurgelewicz, Amanda et al. (2021) Genetics-Based Approach to Identify Novel Genes Regulated by the Aryl Hydrocarbon Receptor in Mouse Liver.; Toxicol Sci, 181: 285-294 |
|
GSE167328 |
| Jury, Robert P et al. (2012) Gene expression changes associated with the progression of intraductal papillary mucinous neoplasms.; Pancreas, 41: 611-8 |
|
GSE26647 |
| Juráková, Veronika et al. (2024) Assessment and Evaluation of Contemporary Approaches for Astrocyte Differentiation from hiPSCs: A Modeling Paradigm for Alzheimer's Disease.; Biol Proced Online, 26: 30 |
|
GSE269743 |
| Justilien, Verline et al. (2014) The PRKCI and SOX2 oncogenes are coamplified and cooperate to activate Hedgehog signaling in lung squamous cell carcinoma.; Cancer Cell, 25: 139-51 |
|
GSE48599 |
| Jutzi, Jonas S et al. (2023) CALR-mutated cells are vulnerable to combined inhibition of the proteasome and the endoplasmic reticulum stress response.; Leukemia, 37: 359-369 |
|
GSE207684 |
| Juul, Sandra E et al. (2009) Microarray analysis of high-dose recombinant erythropoietin treatment of unilateral brain injury in neonatal mouse hippocampus.; Pediatr Res, 65: 485-92 |
|
GSE75865 |
| Juul, Sandra E et al. (2011) Effects of neonatal stress and morphine on murine hippocampal gene expression.; Pediatr Res, 69: 285-92 |
|
GSE50382 |
| Jux, Bettina et al. (2011) The aryl hydrocarbon receptor mediates UVB radiation-induced skin tanning.; J Invest Dermatol, 131: 203-10 |
|
GSE19411 |
| Juárez-Barber, Elena et al. (2024) Transcriptome analysis of adenomyosis eutopic endometrium reveals molecular mechanisms involved in adenomyosis-related implantation failure and pregnancy disorders.; Reprod Biol Endocrinol, 22: 10 |
|
GSE244236 |
| K C, Rajan et al. (2024) Zmiz1 is a novel regulator of brain development associated with autism and intellectual disability.; Front Psychiatry, 15: 1375492 |
|
GSE225435 |
| K C, Rajan et al. (2026) Loss of Zmiz1 in Mice Leads to Impaired Cortical Development and Autistic-Like Behaviors.; Biol Psychiatry, [no vol.]: [no pages] |
|
GSE225333 GSE241140 |
| Kaanta, Alice S et al. (2013) Evidence for a multipotent mammary progenitor with pregnancy-specific activity.; Breast Cancer Res, 15: R65 |
|
GSE42055 |
| Kaarijärvi, Roosa et al. (2024) DPYSL5 is highly expressed in treatment-induced neuroendocrine prostate cancer and promotes lineage plasticity via EZH2/PRC2.; Commun Biol, 7: 108 |
|
GSE151433 |
| Kabakchiev, Boyko et al. (2010) Gene expression changes associated with resistance to intravenous corticosteroid therapy in children with severe ulcerative colitis.; PLoS One, 5: [no pages] |
|
GSE21231 |
| Kabbarah, Omar et al. (2010) Integrative genome comparison of primary and metastatic melanomas.; PLoS One, 5: e10770 |
|
GSE46517 |
| Kabbout, Mohamed et al. (2013) ETS2 mediated tumor suppressive function and MET oncogene inhibition in human non-small cell lung cancer.; Clin Cancer Res, 19: 3383-95 |
|
GSE43458 |
| Kabir, Md et al. (2023) Acetylation Targeting Chimera Enables Acetylation of the Tumor Suppressor p53.; J Am Chem Soc, 145: 14932-14944 |
|
GSE229576 |
| Kachroo, Priyanka et al. (2011) Classification of diet-modulated gene signatures at the colon cancer initiation and progression stages.; Dig Dis Sci, 56: 2595-604 |
|
GSE25912 |
| Kaczmarczyk, Lech et al. (2019) Tagger-A Swiss army knife for multiomics to dissect cell type-specific mechanisms of gene expression in mice.; PLoS Biol, 17: e3000374 |
|
GSE123420 GSE123421 |
| Kaczmarczyk, Lech et al. (2022) Distinct translatome changes in specific neural populations precede electroencephalographic changes in prion-infected mice.; PLoS Pathog, 18: e1010747 |
|
GSE189527 |
| Kaczmarek, Monika M et al. (2016) Lactation undernutrition leads to multigenerational molecular programming of hypothalamic gene networks controlling reproduction.; BMC Genomics, 17: 333 |
|
GSE72746 |
| Kadakkuzha, Beena M et al. (2015) Transcriptome analyses of adult mouse brain reveal enrichment of lncRNAs in specific brain regions and neuronal populations.; Front Cell Neurosci, 9: 63 |
|
GSE61401 |
| Kadara, Humam et al. (2013) Characterizing the molecular spatial and temporal field of injury in early-stage smoker non-small cell lung cancer patients after definitive surgery by expression profiling.; Cancer Prev Res (Phila), 6: 8-17 |
|
GSE40407 |
| Kadara, Humam et al. (2014) Transcriptomic architecture of the adjacent airway field cancerization in non-small cell lung cancer.; J Natl Cancer Inst, 106: dju004 |
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GSE44077 |
| Kadaveru, Krishna et al. (2012) Dietary methyl donor depletion protects against intestinal tumorigenesis in Apc(Min/+) mice.; Cancer Prev Res (Phila), 5: 911-20 |
|
GSE37010 |
| Kader, Bnar Abdul et al. (2021) EZH2 inhibition in glioblastoma stem cells increases the expression of neuronal genes and the neuronal developmental regulators ZIC2, ZNF423 and MAFB; bioRxiv, [no vol.]: [no pages] |
|
GSE192710 |
| Kadish, Inga et al. (2009) Hippocampal and cognitive aging across the lifespan: a bioenergetic shift precedes and increased cholesterol trafficking parallels memory impairment.; J Neurosci, 29: 1805-16 |
|
GSE9990 |
| Kadkhodaei, Banafsheh et al. (2013) Transcription factor Nurr1 maintains fiber integrity and nuclear-encoded mitochondrial gene expression in dopamine neurons.; Proc Natl Acad Sci U S A, 110: 2360-5 |
|
GSE42912 |
| Kadmiel, Mahita et al. (2024) Glucocorticoid Receptor Signaling Is Critical for Mouse Corneal Development, Inhibition of Inflammatory Response, and Neovascularization of the Cornea.; Am J Pathol, 194: 1938-1950 |
|
GSE213660 |
| Kadowaki, Atsushi et al. (2025) CLEC16A in astrocytes promotes mitophagy and limits pathology in a multiple sclerosis mouse model.; Nat Neurosci, 28: 470-486 |
|
GSE189029 GSE189028 |
| Kaelberer, Melanie Maya et al. (2020) Activation of a nerve injury transcriptional signature in airway-innervating sensory neurons after lipopolysaccharide-induced lung inflammation.; Am J Physiol Lung Cell Mol Physiol, 318: L953-L964 |
|
GSE141268 |
| Kaewkhaw, Rossukon et al. (2015) Transcriptome Dynamics of Developing Photoreceptors in Three-Dimensional Retina Cultures Recapitulates Temporal Sequence of Human Cone and Rod Differentiation Revealing Cell Surface Markers and Gene Networks.; Stem Cells, 33: 3504-18 |
|
GSE67645 |
| Kaewkhaw, Rossukon et al. (2016) Treatment Paradigms for Retinal and Macular Diseases Using 3-D Retina Cultures Derived From Human Reporter Pluripotent Stem Cell Lines.; Invest Ophthalmol Vis Sci, 57: ORSFl1-ORSFl11 |
|
GSE103826 |
| Kaforou, Myrsini et al. (2013) Detection of tuberculosis in HIV-infected and -uninfected African adults using whole blood RNA expression signatures: a case-control study.; PLoS Med, 10: e1001538 |
|
GSE37250 |
| Kagawa, Yoshinori et al. (2013) Cell cycle-dependent Rho GTPase activity dynamically regulates cancer cell motility and invasion in vivo.; PLoS One, 8: e83629 |
|
GSE35279 |
| Kageyama, Takumi et al. (2025) Endothelial-Mesenchymal Transition in Tumor Microenvironment Promotes Neuroendocrine Differentiation of Prostate Cancer.; Cancer Sci, 116: 2712-2722 |
|
GSE281995 |
| Kageyama, Tatsuto et al. (2023) Effects of oxytocin on the hair growth ability of dermal papilla cells.; Sci Rep, 13: 15587 |
|
GSE233904 |
| Kageyama, Tatsuto et al. (2025) Serotonin activates dermal papilla cells and promotes hair growth.; Sci Rep, 15: 24525 |
|
GSE291220.2 |
| Kagiyama, Yuki et al. (2021) CDKN1C-mediated growth inhibition by an EZH1/2 dual inhibitor overcomes resistance of mantle cell lymphoma to ibrutinib.; Cancer Sci, 112: 2314-2324 |
|
GSE123518 |
| Kahn, Nicolas et al. (2012) Early detection of lung cancer by molecular markers in endobronchial epithelial-lining fluid.; J Thorac Oncol, 7: 1001-8 |
|
GSE27489 |
| Kahn, Olga I et al. (2025) Secreted neurofilament light chain after neuronal damage induces myeloid cell activation and neuroinflammation.; Cell Rep, 44: 115382 |
|
GSE287769 |
| Kahraman, Sevim et al. (2022) Abnormal exocrine-endocrine cell cross-talk promotes β-cell dysfunction and loss in MODY8.; Nat Metab, 4: 76-89 |
|
GSE185430 |
| Kai, Jing et al. (2025) Building simplified cancer subtyping and prediction models with glycan gene signatures.; Cell Rep Methods, 5: 101140 |
|
GSE254461 |
| Kainulainen, Heikki et al. (2015) Myostatin/activin blocking combined with exercise reconditions skeletal muscle expression profile of mdx mice.; Mol Cell Endocrinol, 399: 131-42 |
|
GSE52766 |
| Kaiser, Alyssa M et al. (2023) p53 governs an AT1 differentiation programme in lung cancer suppression.; Nature, 619: 851-859 |
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GSE231679 GSE231678 |
| Kaiser, Fabian M P et al. (2022) Biallelic PAX5 mutations cause hypogammaglobulinemia, sensorimotor deficits, and autism spectrum disorder.; J Exp Med, 219: [no pages] |
|
GSE182463 |
| Kaiser, Julia et al. (2019) The Spinal Transcriptome after Cortical Stroke: In Search of Molecular Factors Regulating Spontaneous Recovery in the Spinal Cord.; J Neurosci, 39: 4714-4726 |
|
GSE128623 |
| Kaizer, Ellen C et al. (2007) Gene expression in peripheral blood mononuclear cells from children with diabetes.; J Clin Endocrinol Metab, 92: 3705-11 |
|
GSE9006 |
| Kaji, Seiji et al. (2018) Pathological Endogenous ?-Synuclein Accumulation in Oligodendrocyte Precursor Cells Potentially Induces Inclusions in Multiple System Atrophy.; Stem Cell Reports, 10: 356-365 |
|
GSE107582 |
| Kaji, Tomohiro et al. (2012) Distinct cellular pathways select germline-encoded and somatically mutated antibodies into immunological memory.; J Exp Med, [no vol.]: [no pages] |
|
GSE11961 |
| Kajimura, Daisuke et al. (2007) Identification of genes regulated by transcription factor KLF7 in differentiating olfactory sensory neurons.; Gene, 388: 34-42 |
|
GSE3595 |
| Kajimura, Shingo et al. (2009) Initiation of myoblast to brown fat switch by a PRDM16-C/EBP-beta transcriptional complex.; Nature, [no vol.]: [no pages] |
|
GSE15895 |
| Kajiwara, Masatoshi et al. (2012) Donor-dependent variations in hepatic differentiation from human-induced pluripotent stem cells.; Proc Natl Acad Sci U S A, 109: 12538-43 |
|
GSE38153 |
| Kajiyama, K et al. (2013) Capturing drug responses by quantitative promoter activity profiling.; CPT Pharmacometrics Syst Pharmacol, 2: e77 |
|
GSE48652 |
| Kakae, Masashi et al. (2023) The astrocytic TRPA1 channel mediates an intrinsic protective response to vascular cognitive impairment via LIF production.; Sci Adv, 9: eadh0102 |
|
GSE201513 |
| Kakiuchi-Kiyota, Satoko et al. (2014) Comparison of hepatic transcription profiles of locked ribonucleic acid antisense oligonucleotides: evidence of distinct pathways contributing to non-target mediated toxicity in mice.; Toxicol Sci, 138: 234-48 |
|
GSE53230 |
| Kakoola, Dorothy N et al. (2014) Molecular pathway alterations in CD4 T-cells of nonobese diabetic (NOD) mice in the preinsulitis phase of autoimmune diabetes.; Results Immunol, 4: 30-45 |
|
GSE46600 |
| Kakrana, Atul et al. (2018) iSyTE 2.0: a database for expression-based gene discovery in the eye.; Nucleic Acids Res, 46: D875-D885 |
|
GSE100136 |
| Kalailingam, Pazhanichamy et al. (2020) Deficiency of MFSD7c results in microcephaly-associated vasculopathy in Fowler syndrome.; J Clin Invest, [no vol.]: [no pages] |
|
GSE148854 |
| Kalajzic, Ivo et al. (2005) Expression profile of osteoblast lineage at defined stages of differentiation.; J Biol Chem, 280: 24618-26 |
|
GSE2332 |
| Kalanxhi, Erta et al. (2012) Genome-wide microarray analysis of human fibroblasts in response to ? radiation and the radiation-induced bystander effect.; Radiat Res, 177: 35-43 |
|
GSE25772 |
| Kalanxhi, Erta et al. (2012) Transcriptional responses in irradiated and bystander fibroblasts after low dose ?-particle radiation.; Int J Radiat Biol, 88: 713-9 |
|
GSE32091 |
| Kalari, Krishna R et al. (2012) Deep Sequence Analysis of Non-Small Cell Lung Cancer: Integrated Analysis of Gene Expression, Alternative Splicing, and Single Nucleotide Variations in Lung Adenocarcinomas with and without Oncogenic KRAS Mutations.; Front Oncol, 2: 12 |
|
GSE34914 |
| Kalari, Krishna R et al. (2013) An integrated model of the transcriptome of HER2-positive breast cancer.; PLoS One, 8: e79298 |
|
GSE45419 |
| Kalari, Krishna R et al. (2016) BBBomics-Human Blood Brain Barrier Transcriptomics Hub.; Front Neurosci, 10: 71 |
|
GSE76528 |
| Kádár, E et al. (2013) Intracranial self stimulation upregulates the expression of synaptic plasticity related genes and Arc protein expression in rat hippocampus.; Genes Brain Behav, 12: 771-9 |
|
GSE42793 |
| Kádár, Elisabeth et al. (2011) High-frequency stimulation of the ventrolateral thalamus regulates gene expression in hippocampus, motor cortex and caudate-putamen.; Brain Res, 1391: 1-13 |
|
GSE25860 |