List of all 21,933 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Kim, Shinseog et al. (2014) PRMT5 protects genomic integrity during global DNA demethylation in primordial germ cells and preimplantation embryos.; Mol Cell, 56: 564-79 |
|
GSE60875 |
| Kim, Soeun et al. (2021) Regulation of positive and negative selection and TCR signaling during thymic T cell development by capicua.; Elife, 10: [no pages] |
|
GSE173909 |
| Kim, Songhee H et al. (2012) Transcriptional profiling of gastric epithelial cells infected with wild type or arginase-deficient Helicobacter pylori.; BMC Microbiol, 12: 175 |
|
GSE39919 |
| Kim, Soo Hyun et al. (2023) Identification of a novel class of cortisol biosynthesis inhibitors and its implications in a therapeutic strategy for hypercortisolism.; Life Sci, 325: 121744 |
|
GSE236435 |
| Kim, Soo Mi et al. (2010) Prognostic biomarkers for esophageal adenocarcinoma identified by analysis of tumor transcriptome.; PLoS One, 5: e15074 |
|
GSE13898 |
| Kim, Soo Mi et al. (2012) Sixty-five gene-based risk score classifier predicts overall survival in hepatocellular carcinoma.; Hepatology, 55: 1443-52 |
|
GSE16757 |
| Kim, Soo Min et al. (2020) Genome-Wide Analysis Identifies NURR1-Controlled Network of New Synapse Formation and Cell Cycle Arrest in Human Neural Stem Cells.; Mol Cells, 43: 551-571 |
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GSE58475 |
| Kim, Soo Yeon et al. (2025) Involvement of p38 MAPK and MAPKAPK2 in promoting cell death and the inflammatory response to ischemic stress associated with necrotic glioblastoma.; Cell Death Dis, 16: 12 |
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GSE281549 |
| Kim, Soo Young et al. (2017) TGF? signaling is associated with changes in inflammatory gene expression and perineuronal net degradation around inhibitory neurons following various neurological insults.; Sci Rep, 7: 7711 |
|
GSE81302 |
| Kim, Suel-Kee et al. (2024) Individual variation in the emergence of anterior-to-posterior neural fates from human pluripotent stem cells.; Stem Cell Reports, 19: 1336-1350 |
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GSE164053 GSE164052 GSE164054 |
| Kim, Suhyun et al. (2024) Astrocytic autophagy plasticity modulates Aβ clearance and cognitive function in Alzheimer's disease.; Mol Neurodegener, 19: 55 |
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GSE267554 |
| Kim, Sun Yong et al. (2025) Peripheral substance P induces deficits in hippocampal synaptic plasticity and memory.; Mol Brain, 18: 69 |
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GSE301993 |
| Kim, Sun Young et al. (2015) Deregulation of immune response genes in patients with Epstein-Barr virus-associated gastric cancer and outcomes.; Gastroenterology, 148: 137-147.e9 |
|
GSE60873 |
| Kim, Sung Min et al. (2016) Generation of Integration-free Induced Neural Stem Cells from Mouse Fibroblasts.; J Biol Chem, 291: 14199-212 |
|
GSE67319 |
| Kim, Sung-Eun et al. (2021) Wnt1Lineage Specific Deletion ofGpr161Results in Embryonic Midbrain Malformation and Failure of Craniofacial Skeletal Development.; Front Genet, 12: 761418 |
|
GSE185336 |
| Kim, Sung-Hak et al. (2015) EZH2 protects glioma stem cells from radiation-induced cell death in a MELK/FOXM1-dependent manner.; Stem Cell Reports, 4: 226-38 |
|
GSE63963 |
| Kim, Sunghee et al. (2023) Cdon ablation in motor neurons causes age-related motor neuron degeneration and impaired sciatic nerve repair.; J Cachexia Sarcopenia Muscle, 14: 2239-2252 |
|
GSE167597 |
| Kim, Sungsu et al. (2018) Schwann cell O-GlcNAcylation promotes peripheral nerve remyelination via attenuation of the AP-1 transcription factor JUN.; Proc Natl Acad Sci U S A, 115: 8019-8024 |
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GSE115333 |
| Kim, Suyeon et al. (2007) A mouse model of conditional lipodystrophy.; Proc Natl Acad Sci U S A, 104: 16627-32 |
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GSE9131 GSE9130 |
| Kim, Tae Kyung et al. (2011) Transcriptome transfer provides a model for understanding the phenotype of cardiomyocytes.; Proc Natl Acad Sci U S A, 108: 11918-23 |
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GSE30164 |
| Kim, Tae Wan et al. (2021) Biphasic Activation of WNT Signaling Facilitates the Derivation of Midbrain Dopamine Neurons from hESCs for Translational Use.; Cell Stem Cell, 28: 343-355.e5 |
|
GSE162883 |
| Kim, Tae Wan et al. (2024) TNF-NF-κB-p53 axis restricts in vivo survival of hPSC-derived dopamine neurons.; Cell, 187: 3671-3689.e23 |
|
GSE216363 |
| Kim, Tae Whan et al. (2016) Transcriptional Repression of IFN Regulatory Factor 7 by MYC Is Critical for Type I IFN Production in Human Plasmacytoid Dendritic Cells.; J Immunol, 197: 3348-3359 |
|
GSE70276 |
| Kim, Tae-Dong et al. (2016) Histone demethylase JMJD2A drives prostate tumorigenesis through transcription factor ETV1.; J Clin Invest, 126: 706-20 |
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GSE47750 |
| Kim, TaeHyun et al. (2024) Gamma entrainment using audiovisual stimuli alleviates chemobrain pathology and cognitive impairment induced by chemotherapy in mice.; Sci Transl Med, 16: eadf4601 |
|
GSE216146 |
| Kim, Ujin et al. (2026) Epitranscriptomic Regulation of Platinum Resistance via the METTL3-ADAM23 Axis in Ovarian Cancer.; Cells, 15: [no pages] |
|
GSE313200 |
| Kim, Won Kyung et al. (2024) Androgen deprivation induces double-null prostate cancer via aberrant nuclear export and ribosomal biogenesis through HGF and Wnt activation.; Nat Commun, 15: 1231 |
|
GSE226547 |
| Kim, Won-Tae et al. (2022) Secretory SERPINE1 Expression Is Increased by Antiplatelet Therapy, Inducing MMP1 Expression and Increasing Colon Cancer Metastasis.; Int J Mol Sci, 23: [no pages] |
|
GSE153127 |
| Kim, Wonil et al. (2014) Gfi-1 regulates the erythroid transcription factor network through Id2 repression in murine hematopoietic progenitor cells.; Blood, 124: 1586-96 |
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GSE59360 |
| Kim, Woo Jin et al. (2015) Comprehensive Analysis of Transcriptome Sequencing Data in the Lung Tissues of COPD Subjects.; Int J Genomics, 2015: 206937 |
|
GSE57148 |
| Kim, Wun-Jae et al. (2010) Predictive value of progression-related gene classifier in primary non-muscle invasive bladder cancer.; Mol Cancer, 9: 3 |
|
GSE13507 |
| Kim, Y et al. (2018) Comparative genomic evidence for the involvement of schizophrenia risk genes in antipsychotic effects.; Mol Psychiatry, 23: 708-712 |
|
GSE67750 GSE67753 |
| Kim, Yeawon et al. (2023) MANF stimulates autophagy and restores mitochondrial homeostasis to treat autosomal dominant tubulointerstitial kidney disease in mice.; Nat Commun, 14: 6493 |
|
GSE230005 |
| Kim, Yeji et al. (2026) Microglia TFEB activation attenuates Alzheimer's disease pathology by enhancing autophagy-lysosomal function.; J Neuroinflammation, 23: [no pages] |
|
GSE314708 |
| Kim, Yeonhee et al. (2010) A comparative study of genome-wide transcriptional profiles of primary hepatocytes in collagen sandwich and monolayer cultures.; Tissue Eng Part C Methods, 16: 1449-60 |
|
GSE20659 |
| Kim, Yong-June et al. (2010) Gene signatures for the prediction of response to Bacillus Calmette-Guerin immunotherapy in primary pT1 bladder cancers.; Clin Cancer Res, 16: 2131-7 |
|
GSE19423 |
| Kim, Yoonju et al. (2015) ADP-ribosylation factor 6 (ARF6) bidirectionally regulates dendritic spine formation depending on neuronal maturation and activity.; J Biol Chem, 290: 7323-35 |
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GSE40937 |
| Kim, You-Mi et al. (2013) Implications of time-series gene expression profiles of replicative senescence.; Aging Cell, [no vol.]: [no pages] |
|
GSE41714 |
| Kim, Young J et al. (2018) Chd2 Is Necessary for Neural Circuit Development and Long-Term Memory.; Neuron, 100: 1180-1193.e6 |
|
GSE112196 |
| Kim, Young-Kook et al. (2013) TALEN-based knockout library for human microRNAs.; Nat Struct Mol Biol, 20: 1458-64 |
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GSE51217 |
| Kim, Young-Mee et al. (2021) Mitofusin-2 stabilizes adherens junctions and suppresses endothelial inflammation via modulation of β-catenin signaling.; Nat Commun, 12: 2736 |
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GSE148987 |
| Kim, Youngsoon et al. (2012) The MMP-9/TIMP-1 axis controls the status of differentiation and function of myelin-forming Schwann cells in nerve regeneration.; PLoS One, 7: e33664 |
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GSE33454 |
| Kim, Yunhye et al. (2026) Deficiency of Smooth Muscle Adar1 Exacerbates Vascular Remodeling and Pulmonary Hypertension.; Circ Res, 138: e326235 |
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GSE228134 GSE228133 |
| Kim, Yuri et al. (2019) NF-κB RelA Is Required for Hepatoprotection during Pneumonia and Sepsis.; Infect Immun, 87: [no pages] |
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GSE126642 |
| Kimchi, Erik T et al. (2005) Progression of Barrett's metaplasia to adenocarcinoma is associated with the suppression of the transcriptional programs of epidermal differentiation.; Cancer Res, 65: 3146-54 |
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GSE1420 |
| Kimpara, Shuichi et al. (2021) EGR1 Addiction in Diffuse Large B-cell Lymphoma.; Mol Cancer Res, 19: 1258-1269 |
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GSE123291 |
| Kimpel, Mark W et al. (2007) Functional gene expression differences between inbred alcohol-preferring and -non-preferring rats in five brain regions.; Alcohol, 41: 95-132 |
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GSE4494 |
| Kimura, Kimitoshi et al. (2025) Immune checkpoint TIM-3 regulates microglia and Alzheimer's disease.; Nature, 641: 718-731 |
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GSE223423 |
| Kimura, Ryo et al. (2019) Integrative network analysis reveals biological pathways associated with Williams syndrome.; J Child Psychol Psychiatry, 60: 585-598 |
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GSE89594 |
| Kimura, Taizo et al. (2014) Tenascin C protects aorta from acute dissection in mice.; Sci Rep, 4: 4051 |
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GSE36899 |
| Kimura, Yoshizo et al. (2013) The Wnt signaling pathway and mitotic regulators in the initiation and evolution of mantle cell lymphoma: Gene expression analysis.; Int J Oncol, 43: 457-68 |
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GSE30189 |
| Kimura-Kuroda, Junko et al. (2016) Neonicotinoid Insecticides Alter the Gene Expression Profile of Neuron-Enriched Cultures from Neonatal Rat Cerebellum.; Int J Environ Res Public Health, 13: [no pages] |
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GSE80652 GSE80638 GSE80653 |
| Kimura-Yoshida, Chiharu et al. (2015) Fate Specification of Neural Plate Border by Canonical Wnt Signaling and Grhl3 is Crucial for Neural Tube Closure.; EBioMedicine, 2: 513-27 |
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GSE67977 |
| Kimura-Yoshida, Chiharu et al. (2025) EMG1 cooperates with GRHL3 in β-catenin-mediated surface ectoderm differentiation to regulate neural tube closure.; Development, 152: [no pages] |
|
GSE280197 |
| Kin, Koryu et al. (2015) Cell-type phylogenetics and the origin of endometrial stromal cells.; Cell Rep, 10: 1398-409 |
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GSE63733 |
| Kincaid, Shannon et al. (2025) Increasing H2B Monoubiquitination Improves the Transcriptome and Memory in the Aged Hippocampus.; eNeuro, 12: [no pages] |
|
GSE284407 |
| Kind, Jop et al. (2013) Single-cell dynamics of genome-nuclear lamina interactions.; Cell, 153: 178-92 |
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GSE40111 |
| King, Erin R et al. (2011) The anterior gradient homolog 3 (AGR3) gene is associated with differentiation and survival in ovarian cancer.; Am J Surg Pathol, 35: 904-12 |
|
GSE27651 |
| King, Ian F et al. (2013) Topoisomerases facilitate transcription of long genes linked to autism.; Nature, 501: 58-62 |
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GSE43899.2.1 GSE43899.1.4 GSE43899.2.2 GSE43526.2 GSE43899.1.1 GSE43899.1.5 GSE43899.1.2 GSE43899.3 |
| King, Natalie E et al. (2024) Induced pluripotent stem cell derived pericytes respond to mediators of proliferation and contractility.; Stem Cell Res Ther, 15: 59 |
|
GSE252046 |
| Kingston, Rody et al. (2021) Serotonin transporter-mediated molecular axis regulates regional retinal ganglion cell vulnerability and axon regeneration after nerve injury.; PLoS Genet, 17: e1009885 |
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GSE153812 |
| Kinkade, Jessica A et al. (2024) Extracellular vesicles from mouse trophoblast cells: Effects on neural progenitor cells and potential participants in the placenta-brain axis†.; Biol Reprod, 110: 310-328 |
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GSE230783 |
| Kinkel, Sarah A et al. (2015) Jarid2 regulates hematopoietic stem cell function by acting with polycomb repressive complex 2.; Blood, 125: 1890-900 |
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GSE60808 |
| Kinker, Kayla G et al. (2014) Overexpression of dimethylarginine dimethylaminohydrolase 1 attenuates airway inflammation in a mouse model of asthma.; PLoS One, 9: e85148 |
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GSE49047 |
| Kino, Yoshihiro et al. (2016) FUS/TLS acts as an aggregation-dependent modifier of polyglutamine disease model mice.; Sci Rep, 6: 35236 |
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GSE80093 GSE80004 |
| Kinoshita, Shiori et al. (2024) Loss of NSD2 causes dysregulation of synaptic genes and altered H3K36 dimethylation in mice.; Front Genet, 15: 1308234 |
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GSE232566 |
| Kinoshita, Takamasa et al. (2021) Endothelial cell-specific reduction of heparan sulfate suppresses glioma growth in mice.; Discov Oncol, 12: 50 |
|
GSE175419 |
| Kinuthia, Urbanus Muthai et al. (2025) Immunomodulation of inflammatory responses preserves retinal integrity in murine models of pericyte-depletion retinopathy.; JCI Insight, 10: [no pages] |
|
GSE296651 |
| Kioko, Mwikali et al. (2024) The mRNA content of plasma extracellular vesicles provides a window into molecular processes in the brain during cerebral malaria.; Sci Adv, 10: eadl2256 |
|
GSE242856 |
| Kip, Anna M et al. (2022) Temporal Transcript Profiling Identifies a Role for Unfolded Protein Stress in Human Gut Ischemia-Reperfusion Injury.; Cell Mol Gastroenterol Hepatol, 13: 681-694 |
|
GSE37013 |
| Kiran Kumar, Karthika Devi et al. (2024) An improved SNAP-ADAR tool enables efficient RNA base editing to interfere with post-translational protein modification.; Nat Commun, 15: 6615 |
|
GSE264114 |
| Kirby, Leslie et al. (2019) Oligodendrocyte precursor cells present antigen and are cytotoxic targets in inflammatory demyelination.; Nat Commun, 10: 3887 |
|
GSE133508 |
| Kirchhof, Paulus et al. (2011) PITX2c is expressed in the adult left atrium, and reducing Pitx2c expression promotes atrial fibrillation inducibility and complex changes in gene expression.; Circ Cardiovasc Genet, 4: 123-33 |
|
GSE22170 |
| Kirk, Jason S et al. (2015) Top2a identifies and provides epigenetic rationale for novel combination therapeutic strategies for aggressive prostate cancer.; Oncotarget, 6: 3136-46 |
|
GSE64771 |
| Kirkeby, Agnete et al. (2017) Predictive Markers Guide Differentiation to Improve Graft Outcome in Clinical Translation of hESC-Based Therapy for Parkinson's Disease.; Cell Stem Cell, 20: 135-148 |
|
GSE86654 |
| Kirkpatrick, Stacey L et al. (2017) Cytoplasmic FMR1-Interacting Protein 2 Is a Major Genetic Factor Underlying Binge Eating.; Biol Psychiatry, 81: 757-769 |
|
GSE84329 |
| Kirouac, Daniel C et al. (2010) Dynamic interaction networks in a hierarchically organized tissue.; Mol Syst Biol, 6: 417 |
|
GSE16589 |
| Kirschner-Schwabe, Renate et al. (2006) Expression of late cell cycle genes and an increased proliferative capacity characterize very early relapse of childhood acute lymphoblastic leukemia.; Clin Cancer Res, 12: 4553-61 |
|
GSE4698 |
| Kirwan, Ruaidhrí P et al. (2012) Hypoxia regulated gene transcription in human optic nerve lamina cribrosa cells in culture.; Invest Ophthalmol Vis Sci, 53: 2243-55 |
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GSE26820 |
| Kirwin, Stefanie J et al. (2011) Retinal gene expression and visually evoked behavior in diabetic long evans rats.; Invest Ophthalmol Vis Sci, 52: 7654-63 |
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GSE28831 |
| Kiryk, Anna et al. (2013) Impaired rRNA synthesis triggers homeostatic responses in hippocampal neurons.; Front Cell Neurosci, 7: 207 |
|
GSE51240 |
| Kisa, Fumihiko et al. (2017) Naive-like ESRRB+iPSCs with the Capacity for Rapid Neural Differentiation.; Stem Cell Reports, 9: 1825-1838 |
|
GSE104583 |
| Kisby, Brent R et al. (2021) Alcohol Dependence in Rats Is Associated with Global Changes in Gene Expression in the Central Amygdala.; Brain Sci, 11: [no pages] |
|
GSE159136 |
| Kisby, Glen E et al. (2011) The cycad genotoxin MAM modulates brain cellular pathways involved in neurodegenerative disease and cancer in a DNA damage-linked manner.; PLoS One, 6: e20911 |
|
GSE26600 |
| Kiselev, Yury et al. (2012) 3T3 cell lines stably expressing Pax6 or Pax6(5a)--a new tool used for identification of common and isoform specific target genes.; PLoS One, 7: e31915 |
|
GSE31402 |