List of all 21,933 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Kim, Hee-Jung et al. (2011) Systemic analysis of heat shock response induced by heat shock and a proteasome inhibitor MG132.; PLoS One, 6: e20252 |
|
GSE24197 |
| Kim, Heungnam et al. (2012) Changes in global gene expression associated with 3D structure of tumors: an ex vivo matrix-free mesothelioma spheroid model.; PLoS One, 7: e39556 |
|
GSE37629 |
| Kim, Hye-Jin et al. (2014) MicroRNAs are required for the feature maintenance and differentiation of brown adipocytes.; Diabetes, 63: 4045-56 |
|
GSE60165 |
| Kim, Hye-Jin et al. (2019) Histone demethylase PHF2 activates CREB and promotes memory consolidation.; EMBO Rep, 20: e45907 |
|
GSE129148 |
| Kim, Hyeng-Soo et al. (2015) Gene expression profiles reveal effect of a high-fat diet on the development of white and brown adipose tissues.; Gene, 565: 15-21 |
|
GSE64718 |
| Kim, Hyeongju et al. (2022) A pathogenic proteolysis-resistant huntingtin isoform induced by an antisense oligonucleotide maintains huntingtin function.; JCI Insight, 7: [no pages] |
|
GSE209893 |
| Kim, Hyeonkyeong et al. (2020) A system-level approach identifies HIF-2α as a critical regulator of chondrosarcoma progression.; Nat Commun, 11: 5023 |
|
GSE156565 |
| Kim, Hyesoo et al. (2011) miR-371-3 expression predicts neural differentiation propensity in human pluripotent stem cells.; Cell Stem Cell, 8: 695-706 |
|
GSE27834.2 |
| Kim, Hyosang et al. (2022) Early postnatal serotonin modulation prevents adult-stage deficits in Arid1b-deficient mice through synaptic transcriptional reprogramming.; Nat Commun, 13: 5051 |
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GSE203214 GSE189653 GSE203343 GSE203249 |
| Kim, Hyun Jung et al. (2022) Postmortem gene expression profiles in the habenulae of suicides: implication of endothelial dysfunction in the neurovascular system.; Mol Brain, 15: 48 |
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GSE199536 |
| Kim, Hyunbae et al. (2024) ER-tethered stress sensor CREBH regulates mitochondrial unfolded protein response to maintain energy homeostasis.; Proc Natl Acad Sci U S A, 121: e2410486121 |
|
GSE281608 |
| Kim, Hyungsoo et al. (2023) Melanoma-intrinsic NR2F6 activity regulates antitumor immunity.; Sci Adv, 9: eadf6621 |
|
GSE228162 |
| Kim, Hyunu et al. (2023) Cutting Edge: STAT4 Promotes Bhlhe40 Induction to Drive Protective IFN-γ from NK Cells during Viral Infection.; J Immunol, 211: 1469-1474 |
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GSE235608 GSE244300 |
| Kim, Il-Jin et al. (2013) Rewiring of human lung cell lineage and mitotic networks in lung adenocarcinomas.; Nat Commun, 4: 1701 |
|
GSE32665 |
| Kim, Il-Kug et al. (2018) Sox7 promotes high-grade glioma by increasing VEGFR2-mediated vascular abnormality.; J Exp Med, 215: 963-983 |
|
GSE90459 |
| Kim, In-Kyu et al. (2020) Mutant GTF2I induces cell transformation and metabolic alterations in thymic epithelial cells.; Cell Death Differ, 27: 2263-2279 |
|
GSE127909 |
| Kim, Jae-Bong et al. (2024) Integration of National Health Insurance claims data and animal models reveals fexofenadine as a promising repurposed drug for Parkinson's disease.; J Neuroinflammation, 21: 53 |
|
GSE241257 |
| Kim, Jaehwan et al. (2016) Molecular Phenotyping Small (Asian) versus Large (Western) Plaque Psoriasis Shows Common Activation of IL-17 Pathway Genes but Different Regulatory Gene Sets.; J Invest Dermatol, 136: 161-172 |
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GSE67853 |
| Kim, Jaekyoon et al. (2023) Dissecting 16p11.2 hemi-deletion to study sex-specific striatal phenotypes of neurodevelopmental disorders.; bioRxiv, [no vol.]: [no pages] |
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GSE224750.1 |
| Kim, Jaekyoon et al. (2024) Dissecting 16p11.2 hemi-deletion to study sex-specific striatal phenotypes of neurodevelopmental disorders.; Mol Psychiatry, 29: 1310-1321 |
|
GSE224750.2 |
| Kim, Jaeryung et al. (2017) Impaired angiopoietin/Tie2 signaling compromises Schlemm's canal integrity and induces glaucoma.; J Clin Invest, 127: 3877-3896 |
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GSE83299 |
| Kim, Jang Keun et al. (2019) Brain somatic mutations in MTOR reveal translational dysregulations underlying intractable focal epilepsy.; J Clin Invest, 129: 4207-4223 |
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GSE129818 |
| Kim, Jee-Eun et al. (2017) Altered nucleocytoplasmic proteome and transcriptome distributions in an in vitro model of amyotrophic lateral sclerosis.; PLoS One, 12: e0176462 |
|
GSE90913 |
| Kim, Jeeho et al. (2021) Akt-mediated Ephexin1-Ras interaction promotes oncogenic Ras signaling and colorectal and lung cancer cell proliferation.; Cell Death Dis, 12: 1013 |
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GSE147809 |
| Kim, Jeffrey J et al. (2014) Gene expression signatures affected by ethanol and/or nicotine in normal human normal oral keratinocytes (NHOKs).; Genom Data, 2: 156-161 |
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GSE57634 |
| Kim, Jeffrey J et al. (2014) Molecular effect of ethanol during neural differentiation of human embryonic stem cellsin vitro.; Genom Data, 2: 139-143 |
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GSE56906 |
| Kim, Jennifer et al. (2024) Repeated LPS induces training and tolerance of microglial responses across brain regions.; J Neuroinflammation, 21: 233 |
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GSE165287 |
| Kim, Jeong Beom et al. (2008) Pluripotent stem cells induced from adult neural stem cells by reprogramming with two factors.; Nature, 454: 646-50 |
|
GSE10806 |
| Kim, Jeong Beom et al. (2009) Direct reprogramming of human neural stem cells by OCT4.; Nature, [no vol.]: [no pages] |
|
GSE15355 |
| Kim, Jeong Beom et al. (2009) Oct4-induced pluripotency in adult neural stem cells.; Cell, 136: 411-9 |
|
GSE12499 |
| Kim, Jeong Beom et al. (2015) Oct4-induced oligodendrocyte progenitor cells enhance functional recovery in spinal cord injury model.; EMBO J, 34: 2971-83 |
|
GSE52035 |
| Kim, Jeongseop et al. (2024) Synaptotagmin-4 induces anhedonic responses to chronic stress via BDNF signaling in the medial prefrontal cortex.; Exp Mol Med, 56: 329-343 |
|
GSE226576 |
| Kim, Ji Young et al. (2014) Genome-wide profiling of the microRNA-mRNA regulatory network in skeletal muscle with aging.; Aging (Albany NY), 6: 524-44 |
|
GSE55163 |
| Kim, Ji-Kwang et al. (2023) Metabolic and Transcriptomic Changes in the Mouse Brain in Response to Short-Term High-Fat Metabolic Stress.; Metabolites, 13: [no pages] |
|
GSE226771 |
| Kim, Jong Wook et al. (2017) Decomposing Oncogenic Transcriptional Signatures to Generate Maps of Divergent Cellular States.; Cell Syst, 5: 105-118.e9 |
|
GSE94937 |
| Kim, Jong-Hwan et al. (2018) Vitamin C Promotes Astrocyte Differentiation Through DNA Hydroxymethylation.; Stem Cells, 36: 1578-1588 |
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GSE99398 |
| Kim, Jongshin et al. (2017) YAP/TAZ regulates sprouting angiogenesis and vascular barrier maturation.; J Clin Invest, 127: 3441-3461 |
|
GSE94673 |
| Kim, Joonki et al. (2018) Transcriptome analysis reveals intermittent fasting-induced genetic changes in ischemic stroke.; Hum Mol Genet, 27: 1497-1513 |
|
GSE116878 |
| Kim, Joonki et al. (2019) Cerebral transcriptome analysis reveals age-dependent progression of neuroinflammation in P301S mutant tau transgenic male mice.; Brain Behav Immun, 80: 344-357 |
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GSE118473 |
| Kim, Joshua et al. (2016) Antagonistic negative and positive neurons of the basolateral amygdala.; Nat Neurosci, 19: 1636-1646 |
|
GSE78137 |
| Kim, Juhyun et al. (2017) Changes in the Excitability of Neocortical Neurons in a Mouse Model of Amyotrophic Lateral Sclerosis Are Not Specific to Corticospinal Neurons and Are Modulated by Advancing Disease.; J Neurosci, 37: 9037-9053 |
|
GSE101391 |
| Kim, Jun-Dal et al. (2023) Increased angiotensin II coupled with decreased Adra1a expression enhances cardiac hypertrophy in pregnancy-associated hypertensive mice.; J Biol Chem, 299: 102964 |
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GSE140948 |
| Kim, Jung H et al. (2011) Deep sequencing reveals distinct patterns of DNA methylation in prostate cancer.; Genome Res, 21: 1028-41 |
|
GSE29155 |
| Kim, Jung Min et al. (2018) Tissue-Specific Profiling of Oxidative Stress-Associated Transcriptome in a Healthy Mouse Model.; Int J Mol Sci, 19: [no pages] |
|
GSE111159 |
| Kim, Jung Mo et al. (2016) Perivascular Progenitor Cells Derived From Human Embryonic Stem Cells Exhibit Functional Characteristics of Pericytes and Improve the Retinal Vasculature in a Rodent Model of Diabetic Retinopathy.; Stem Cells Transl Med, 5: 1268-76 |
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GSE77114 |
| Kim, Jung-Woong et al. (2016) NRL-Regulated Transcriptome Dynamics of Developing Rod Photoreceptors.; Cell Rep, 17: 2460-2473 |
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GSE74657 |
| Kim, Jung-Woong et al. (2016) Recruitment of Rod Photoreceptors from Short-Wavelength-Sensitive Cones during the Evolution of Nocturnal Vision in Mammals.; Dev Cell, 37: 520-32 |
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GSE74660 |
| Kim, Jungwoo Wren et al. (2021) Dysregulated mRNA Translation in the G2019S LRRK2 and LRRK2 Knock-Out Mouse Brains.; eNeuro, 8: [no pages] |
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GSE167704 |
| Kim, Junhyung et al. (2022) Slc6a20a Heterozygous and Homozygous Mutant Mice Display Differential Behavioral and Transcriptomic Changes.; Front Mol Neurosci, 15: 857820 |
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GSE193387 |
| Kim, Juyong Brian et al. (2011) Paraoxonase-2 modulates stress response of endothelial cells to oxidized phospholipids and a bacterial quorum-sensing molecule.; Arterioscler Thromb Vasc Biol, 31: 2624-33 |
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GSE26295 |
| Kim, Kee-Beom et al. (2022) WNT5A-RHOA Signaling Is a Driver of Tumorigenesis and Represents a Therapeutically Actionable Vulnerability in Small Cell Lung Cancer.; Cancer Res, 82: 4219-4233 |
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GSE197893 |
| Kim, Ki et al. (2021) Therapeutic B-cell depletion reverses progression of Alzheimer's disease.; Nat Commun, 12: 2185 |
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GSE165111 |
| Kim, Ki Woo et al. (2012) FOXO1 in the ventromedial hypothalamus regulates energy balance.; J Clin Invest, 122: 2578-89 |
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GSE36948 |
| Kim, Kidong et al. (2023) A differential diagnosis between uterine leiomyoma and leiomyosarcoma using transcriptome analysis.; BMC Cancer, 23: 1215 |
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GSE222045 |
| Kim, Kwi Hye et al. (2015) Transcriptomic Analysis of Induced Pluripotent Stem Cells Derived from Patients with Bipolar Disorder from an Old Order Amish Pedigree.; PLoS One, 10: e0142693 |
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GSE74358 |
| Kim, Kyunam et al. (2020) Transcriptional Expression in Human Periodontal Ligament Cells Subjected to Orthodontic Force: An RNA-Sequencing Study.; J Clin Med, 9: [no pages] |
|
GSE165988 |
| Kim, Kyungwon et al. (2024) Differential gene expression and pathway analysis in growth hormone-secreting pituitary tumors according to granulation pattern.; Front Oncol, 14: 1423606 |
|
GSE264621 |
| Kim, Man Lyang et al. (2018) Dysregulated IL-1β-GM-CSF Axis in Acute Rheumatic Fever That Is Limited by Hydroxychloroquine.; Circulation, 138: 2648-2661 |
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GSE74235 |
| Kim, Mi Young et al. (2013) hsp70 and a novel axis of type I interferon-dependent antiviral immunity in the measles virus-infected brain.; J Virol, 87: 998-1009 |
|
GSE42264 |
| Kim, Mickey K et al. (2012) Characterization of an oxaliplatin sensitivity predictor in a preclinical murine model of colorectal cancer.; Mol Cancer Ther, [no vol.]: [no pages] |
|
GSE28691 |
| Kim, Min Ji et al. (2012) Inflammatory pathway genes belong to major targets of persistent organic pollutants in adipose cells.; Environ Health Perspect, 120: 508-14 |
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GSE32026 |
| Kim, Min Young et al. (2019) Rational discovery of antimetastatic agents targeting the intrinsically disordered region of MBD2.; Sci Adv, 5: eaav9810 |
|
GSE130637 |
| Kim, Min-Hyun et al. (2023) LepRb+ cell-specific deletion of Slug mitigates obesity and nonalcoholic fatty liver disease in mice.; J Clin Invest, 133: [no pages] |
|
GSE217748 |
| Kim, Min-Kyu et al. (2023) The TGFβ→TAK1→LATS→YAP1 Pathway Regulates the Spatiotemporal Dynamics of YAP1.; Mol Cells, 46: 592-610 |
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GSE226590 |
| Kim, Minchul et al. (2018) Maf links Neuregulin1 signaling to cholesterol synthesis in myelinating Schwann cells.; Genes Dev, 32: 645-657 |
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GSE107384 |
| Kim, Minseok et al. (2025) Stable olfactory receptor activation across odor complexity.; iScience, 28: 113740 |
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GSE296359.1 GSE296359.2 |
| Kim, Moonhang et al. (2024) Early involvement of peripherally derived monocytes in inflammation in an NMO-like mouse model.; Sci Rep, 14: 1177 |
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GSE235277 GSE235276 |
| Kim, Myoungjoo V et al. (2013) The transcription factor Foxo1 controls central-memory CD8+ T cell responses to infection.; Immunity, 39: 286-97 |
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GSE46942 |
| Kim, Nahyun et al. (2024) Sustained Microglial Activation Promotes Synaptic Loss and Neuronal Dysfunction after Recovery from ZIKV Infection.; Int J Mol Sci, 25: [no pages] |
|
GSE265861 |
| Kim, Nam Hee et al. (2016) Mediator subunit Med12 contributes to the maintenance of neural stem cell identity.; BMC Dev Biol, 16: 17 |
|
GSE80624 |
| Kim, Namsuk et al. (2024) Repulsive Sema3E-Plexin-D1 signaling coordinates both axonal extension and steering via activating an autoregulatory factor, Mtss1.; Elife, 13: [no pages] |
|
GSE196558 |
| Kim, Peter Geon et al. (2013) Signaling axis involving Hedgehog, Notch, and Scl promotes the embryonic endothelial-to-hematopoietic transition.; Proc Natl Acad Sci U S A, 110: E141-50 |
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GSE19951 |
| Kim, S et al. (2013) PPAR?-mediated responses in human adult liver stem cells: In vivo/in vitro and cross-species comparisons.; J Steroid Biochem Mol Biol, 138: 236-47 |
|
GSE47844 |
| Kim, S Y et al. (2016) Bone marrow stromal cells show distinct gene expression patterns depending on symptomatically involved organs in multiple myeloma.; Blood Cancer J, 6: e476 |
|
GSE85837 |
| Kim, Sang Hwa et al. (2016) Tunable regulation of CREB DNA binding activity couples genotoxic stress response and metabolism.; Nucleic Acids Res, [no vol.]: [no pages] |
|
GSE83891 |
| Kim, Sang T et al. (2022) Distinct molecular and immune hallmarks of inflammatory arthritis induced by immune checkpoint inhibitors for cancer therapy.; Nat Commun, 13: 1970 |
|
GSE173303 |
| Kim, Sangbae et al. (2019) Generation, transcriptome profiling, and functional validation of cone-rich human retinal organoids.; Proc Natl Acad Sci U S A, 116: 10824-10833 |
|
GSE119274 |
| Kim, Sanghyeon et al. (2009) An E3 ubiquitin ligase, Really Interesting New Gene (RING) Finger 41, is a candidate gene for anxiety-like behavior and beta-carboline-induced seizures.; Biol Psychiatry, 65: 425-31 |
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GSE8641.3 GSE8641.1 GSE8641.2 |
| Kim, Sehui et al. (2024) Increased CCL2/CCR2 axis promotes tumor progression by increasing M2 macrophages in MYC/BCL2 double-expressor DLBCL.; Blood Adv, 8: 5773-5788 |
|
GSE252690 |
| Kim, Seok Gi et al. (2025) Synphilin-1 regulates mechanotransduction in rigidity sensing through interaction with zyxin.; J Nanobiotechnology, 23: 345 |
|
GSE255201 |
| Kim, Seok Jin et al. (2014) Gene expression profiles for the prediction of progression-free survival in diffuse large B cell lymphoma: results of a DASL assay.; Ann Hematol, 93: 437-47 |
|
GSE38202 |
| Kim, Seon-Kyu et al. (2011) Identification of gene expression signature modulated by nicotinamide in a mouse bladder cancer model.; PLoS One, 6: e26131 |
|
GSE21636 |
| Kim, Seon-Kyu et al. (2014) A nineteen gene-based risk score classifier predicts prognosis of colorectal cancer patients.; Mol Oncol, 8: 1653-66 |
|
GSE50760 |
| Kim, Seong K et al. (2016) Immunization with Attenuated Equine Herpesvirus 1 Strain KyA Induces Innate Immune Responses That Protect Mice from Lethal Challenge.; J Virol, 90: 8090-104 |
|
GSE81219 |
| Kim, Seongbin et al. (2022) Postnatal age-differential ASD-like transcriptomic, synaptic, and behavioral deficits in Myt1l-mutant mice.; Cell Rep, 40: 111398 |
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GSE185607 GSE206714 |
| Kim, Seonhee et al. (2021) Early Transcriptional Changes in Rabies Virus-Infected Neurons and Their Impact on Neuronal Functions.; Front Microbiol, 12: 730892 |
|
GSE178583 |
| Kim, Seung Won et al. (2021) Neural stem cells derived from human midbrain organoids as a stable source for treating Parkinson's disease: Midbrain organoid-NSCs (Og-NSC) as a stable source for PD treatment.; Prog Neurobiol, 204: 102086 |
|
GSE142505 |
| Kim, Seung-Kyoon et al. (2021) Functional coordination of BET family proteins underlies altered transcription associated with memory impairment in fragile X syndrome.; Sci Adv, 7: [no pages] |
|
GSE139309 |
| Kim, Seung-Soo et al. (2016) Whole-transcriptome analysis of mouse adipose tissue in response to short-term caloric restriction.; Mol Genet Genomics, 291: 831-47 |
|
GSE60596 |
| Kim, Seunghyun et al. (2025) Perturbed cell fate decision by schizophrenia-associated AS3MTd2d3isoform during corticogenesis.; Sci Adv, 11: eadp8271 |
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GSE274763 |
| Kim, Seungsoo et al. (2024) DNA-guided transcription factor cooperativity shapes face and limb mesenchyme.; Cell, 187: 692-711.e26 |
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GSE230318.2 |