List of all 21,933 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Ko, Yi-An et al. (2013) Cytosine methylation changes in enhancer regions of core pro-fibrotic genes characterize kidney fibrosis development.; Genome Biol, 14: R108 |
|
GSE48944 |
| Kobaisi, Farah et al. (2026) MNX1 prevents somatostatin expression in human beta cells by repressing PERCC1.; Diabetologia, 69: 674-688 |
|
GSE300606 |
| Kobayakawa, Kazu et al. (2019) Locomotor Training Increases Synaptic Structure With High NGL-2 Expression After Spinal Cord Hemisection.; Neurorehabil Neural Repair, 33: 225-231 |
|
GSE115156 |
| Kobayashi, Eisuke et al. (2010) Reduced argininosuccinate synthetase is a predictive biomarker for the development of pulmonary metastasis in patients with osteosarcoma.; Mol Cancer Ther, 9: 535-44 |
|
GSE14827 |
| Kobayashi, Hiroki et al. (2024) Neuro-mesenchymal interaction mediated by a β2 adrenergic-nerve growth factor feedforward loop promotes colorectal cancer progression.; Cancer Discov, [no vol.]: [no pages] |
|
GSE243326 |
| Kobayashi, Mariko et al. (2019) AGO CLIP Reveals an Activated Network for Acute Regulation of Brain Glutamate Homeostasis in Ischemic Stroke.; Cell Rep, 28: 979-991.e6 |
|
GSE104036 GSE104047 |
| Kobayashi, Sakiko et al. (2010) Mechanisms of progesterone receptor inhibition of inflammatory responses in cellular models of breast cancer.; Mol Endocrinol, 24: 2292-302 |
|
GSE24468 |
| Kobayashi, Scott D et al. (2004) Gene expression profiling provides insight into the pathophysiology of chronic granulomatous disease.; J Immunol, 172: 636-43 |
|
GSE935 |
| Kobayashi, Scott D et al. (2005) Spontaneous neutrophil apoptosis and regulation of cell survival by granulocyte macrophage-colony stimulating factor.; J Leukoc Biol, 78: 1408-18 |
|
GSE2803 |
| Kobayashi, Scott D et al. (2010) Rapid neutrophil destruction following phagocytosis of Staphylococcus aureus.; J Innate Immun, 2: 560-75 |
|
GSE16837 |
| Kobayashi, Taeko et al. (2019) Enhanced lysosomal degradation maintains the quiescent state of neural stem cells.; Nat Commun, 10: 5446 |
|
GSE130018 |
| Kobayashi, Yasuyuki et al. (2025) IgSF11-RAP1 signaling promotes cell migration and invasion of cutaneous melanoma.; Cell Commun Signal, 23: 330 |
|
GSE285994 |
| Kobayashi, Yohei et al. (2015) Clock genes control cortical critical period timing.; Neuron, 86: 264-75 |
|
GSE62956 |
| Kobilo, Tali et al. (2014) AMPK agonist AICAR improves cognition and motor coordination in young and aged mice.; Learn Mem, 21: 119-26 |
|
GSE50873 |
| Kobori, Masuko et al. (2012) Phloridzin reduces blood glucose levels and alters hepatic gene expression in normal BALB/c mice.; Food Chem Toxicol, 50: 2547-53 |
|
GSE37415 |
| Kobori, Masuko et al. (2016) Quercetin suppresses immune cell accumulation and improves mitochondrial gene expression in adipose tissue of diet-induced obese mice.; Mol Nutr Food Res, 60: 300-12 |
|
GSE71367 |
| Kobori, Msauko et al. (2009) Dietary quercetin alleviates diabetic symptoms and reduces streptozotocin-induced disturbance of hepatic gene expression in mice.; Mol Nutr Food Res, 53: 859-68 |
|
GSE38136 GSE38067 |
| Kobow, Katja et al. (2013) Deep sequencing reveals increased DNA methylation in chronic rat epilepsy.; Acta Neuropathol, 126: 741-56 |
|
GSE50079 |
| Kobow, Katja et al. (2019) Genomic DNA methylation distinguishes subtypes of human focal cortical dysplasia.; Epilepsia, 60: 1091-1103 |
|
GSE128300 |
| Kobrzycka, Anna Teresa et al. (2022) Hypothalamic Neurochemical Changes in Long-Term Recovered Bilateral Subdiaphragmatic Vagotomized Rats.; Front Behav Neurosci, 16: 869526 |
|
GSE199231 |
| Kocabas, Arif et al. (2015) Widespread Differential Expression of Coding Region and 3' UTR Sequences in Neurons and Other Tissues.; Neuron, 88: 1149-1156 |
|
GSE75596 |
| Kocabayoglu, Peri et al. (2016) Induction and contribution of beta platelet-derived growth factor signalling by hepatic stellate cells to liver regeneration after partial hepatectomy in mice.; Liver Int, 36: 874-82 |
|
GSE52234 |
| Koch, C E et al. (2020) Circadian regulation of hedonic appetite in mice by clocks in dopaminergic neurons of the VTA.; Nat Commun, 11: 3071 |
|
GSE125812 |
| Koch, Marilin S et al. (2023) Uncovering transcriptomic landscape alterations of CAN-2409 inin vitroandin vivoglioma models.; Front Med (Lausanne), 10: 1140352 |
|
GSE230661.2 GSE230661.1 |
| Koch, Maximilian et al. (2025) NGF stimulation alters the transcriptome and surface TrkB expression in axons of dorsal root ganglion neurons.; Neurobiol Pain, 18: 100194 |
|
GSE292014 |
| Kochat, Veena et al. (2021) Enhancer reprogramming in PRC2-deficient malignant peripheral nerve sheath tumors induces a targetable de-differentiated state.; Acta Neuropathol, 142: 565-590 |
|
GSE141437 |
| Kocher, Acadia A et al. (2023) CpG island turnover events predict evolutionary changes in enhancer activity.; bioRxiv, [no vol.]: [no pages] |
|
GSE231307 |
| Kocher, Daniela et al. (2024) Rebound growth of BRAF mutant pediatric glioma cells after MAPKi withdrawal is associated with MAPK reactivation and secretion of microglia-recruiting cytokines.; J Neurooncol, 168: 317-332 |
|
GSE249718 |
| Kochmanski, Joseph et al. (2019) Developmental Dieldrin Exposure Alters DNA Methylation at Genes Related to Dopaminergic Neuron Development and Parkinson's Disease in Mouse Midbrain.; Toxicol Sci, 169: 593-607 |
|
GSE134636 |
| Kocot, Joanna et al. (2025) Clemastine fumarate accelerates accumulation of disability in progressive multiple sclerosis by enhancing pyroptosis.; J Clin Invest, 135: [no pages] |
|
GSE268150 |
| Kodali, Mahesh Chandra et al. (2021) Temporal unsnarling of brain's acute neuroinflammatory transcriptional profiles reveals panendothelitis as the earliest event preceding microgliosis.; Mol Psychiatry, 26: 3905-3919 |
|
GSE155517 GSE155516 |
| Kodali, Vamsi et al. (2013) Dysregulation of macrophage activation profiles by engineered nanoparticles.; ACS Nano, 7: 6997-7010 |
|
GSE44294 |
| Kodama, Keiichi et al. (2008) Tissue- and age-specific changes in gene expression during disease induction and progression in NOD mice.; Clin Immunol, 129: 195-201 |
|
GSE21884 GSE21897 GSE15150 |
| Kodama, Takashi et al. (2019) Graded co-expression of ion channel, neurofilament, and synaptic genes in fast-spiking vestibular nucleus neurons.; J Neurosci, [no vol.]: [no pages] |
|
GSE55656 |
| Kodavanti, Urmila P et al. (2008) The role of particulate matter-associated zinc in cardiac injury in rats.; Environ Health Perspect, 116: 13-20 |
|
GSE6541 |
| Koehler, Jacqueline A et al. (2015) GLP-1R agonists promote normal and neoplastic intestinal growth through mechanisms requiring Fgf7.; Cell Metab, 21: 379-91 |
|
GSE63841 |
| Koelsch, Bernd et al. (2011) Sex-biased suppression of chemically induced neural carcinogenesis in congenic BDIX.BDIV-Mss4a rats.; Physiol Genomics, 43: 631-9 |
|
GSE25929 |
| Koene, Linda Mc et al. (2021) Identifying the temporal electrophysiological and molecular changes that contribute to TSC-associated epileptogenesis.; JCI Insight, 6: [no pages] |
|
GSE164306 |
| Koenning, Matthias et al. (2021) Neuronal SETD2 activity links microtubule methylation to an anxiety-like phenotype in mice.; Brain, 144: 2527-2540 |
|
GSE173090 |
| Koeppel, Max et al. (2011) Crosstalk between c-Jun and TAp73alpha/beta contributes to the apoptosis-survival balance.; Nucleic Acids Res, 39: 6069-85 |
|
GSE15780 |
| Koerdel, Kristin et al. (2021) NOTCH Activation via gp130/STAT3 Signaling Confers Resistance to Chemoradiotherapy.; Cancers (Basel), 13: [no pages] |
|
GSE139455 |
| Koerner, Martha V et al. (2019) An Orphan CpG Island Drives Expression of alet-7miRNA Precursor with an Important Role in Mouse Development.; Epigenomes, 3: 7 |
|
GSE123951 |
| Koesema, Eric et al. (2017) Global analysis of gene expression mediated by OX1 orexin receptor signaling in a hypothalamic cell line.; PLoS One, 12: e0188082 |
|
GSE99690 |
| Kofman, Sigal B et al. (2025) RIPK3 coordinates RHIM domain-dependent antiviral inflammatory transcription in neurons.; Sci Signal, 18: eado9745 |
|
GSE281172 GSE281061 GSE280962 GSE282452 GSE281136 GSE280963 GSE281170 |
| Kofuji, Satoshi et al. (2025) Region-specific roles of stress-activated protein kinase MKK7 in the developing and maturing murine brain.; Sci Rep, 15: 20504 |
|
GSE293965 |
| Koga, Makito et al. (2014) Foxd1 is a mediator and indicator of the cell reprogramming process.; Nat Commun, 5: 3197 |
|
GSE38509 |
| Koga, Tomoyuki et al. (2020) Longitudinal assessment of tumor development using cancer avatars derived from genetically engineered pluripotent stem cells.; Nat Commun, 11: 550 |
|
GSE133479 |
| Kogel, Ulrike et al. (2014) A 28-day rat inhalation study with an integrated molecular toxicology endpoint demonstrates reduced exposure effects for a prototypic modified risk tobacco product compared with conventional cigarettes.; Food Chem Toxicol, 68: 204-17 |
|
GSE50254 |
| Kogelman, Lisette J A et al. (2018) Transcriptomic profiling of trigeminal nucleus caudalis and spinal cord dorsal horn.; Brain Res, 1692: 23-33 |
|
GSE111770 |
| Kogelman, Lisette Johanna Antonia et al. (2017) Whole transcriptome expression of trigeminal ganglia compared to dorsal root ganglia in Rattus Norvegicus.; Neuroscience, 350: 169-179 |
|
GSE96765 |
| Kogo, Ryunosuke et al. (2011) Long noncoding RNA HOTAIR regulates polycomb-dependent chromatin modification and is associated with poor prognosis in colorectal cancers.; Cancer Res, 71: 6320-6 |
|
GSE21815 |
| Koh, Isabel et al. (2024) Modular tissue-in-a-CUBE platform to model blood-brain barrier (BBB) and brain interaction.; Commun Biol, 7: 177 |
|
GSE253222 |
| Koh, Kian Peng et al. (2011) Tet1 and Tet2 regulate 5-hydroxymethylcytosine production and cell lineage specification in mouse embryonic stem cells.; Cell Stem Cell, 8: 200-13 |
|
GSE26900 |
| Koh, Lynnette Wei-Hsien et al. (2013) A Distinct Reactive Oxygen Species Profile Confers Chemoresistance in Glioma-Propagating Cells and Associates with Patient Survival Outcome.; Antioxid Redox Signal, [no vol.]: [no pages] |
|
GSE32335 |
| Koh, Mei Yee et al. (2011) The hypoxia-associated factor switches cells from HIF-1?- to HIF-2?-dependent signaling promoting stem cell characteristics, aggressive tumor growth and invasion.; Cancer Res, 71: 4015-27 |
|
GSE27523 |
| Koh, Sookyong et al. (2005) Environmental enrichment reverses the impaired exploratory behavior and altered gene expression induced by early-life seizures.; J Child Neurol, 20: 796-802 |
|
GSE1833 |
| Koh, Winston et al. (2014) Noninvasive in vivo monitoring of tissue-specific global gene expression in humans.; Proc Natl Acad Sci U S A, 111: 7361-6 |
|
GSE56899 |
| Kohen, Rafi et al. (2020) Small-hairpin RNAs cause target-independent microRNA dysregulation in neurons and elicit global transcriptomic changes; bioRxiv, [no vol.]: [no pages] |
|
GSE156878 |
| Kohlhof, Hella et al. (2009) Notch1, Notch2, and Epstein-Barr virus-encoded nuclear antigen 2 signaling differentially affects proliferation and survival of Epstein-Barr virus-infected B cells.; Blood, 113: 5506-15 |
|
GSE12355 |
| Kohlmann, Alexander et al. (2008) An international standardization programme towards the application of gene expression profiling in routine leukaemia diagnostics: the Microarray Innovations in LEukemia study prephase.; Br J Haematol, 142: 802-7 |
|
GSE11135 |
| Kohlmeyer, Jordan L et al. (2020) RABL6A Is an Essential Driver of MPNSTs that Negatively Regulates the RB1 Pathway and Sensitizes Tumor Cells to CDK4/6 Inhibitors.; Clin Cancer Res, 26: 2997-3011 |
|
GSE145064 |
| Kohlmeyer, Jordan L et al. (2023) CDK4/6-MEK Inhibition in MPNSTs Causes Plasma Cell Infiltration, Sensitization to PD-L1 Blockade, and Tumor Regression.; Clin Cancer Res, 29: 3484-3497 |
|
GSE224656 |
| Kohman, Rachel A et al. (2011) Voluntary wheel running reverses age-induced changes in hippocampal gene expression.; PLoS One, 6: e22654 |
|
GSE29075 |
| Kohn, Kurt W et al. (2014) Gene expression correlations in human cancer cell lines define molecular interaction networks for epithelial phenotype.; PLoS One, 9: e99269 |
|
GSE29288 |
| Kohno, Daisuke et al. (2014) Dnmt3a in Sim1 neurons is necessary for normal energy homeostasis.; J Neurosci, 34: 15288-96 |
|
GSE42304 |
| Kohrt, Holbrook E et al. (2013) Identification of gene microarray expression profiles in patients with chronic graft-versus-host disease following allogeneic hematopoietic cell transplantation.; Clin Immunol, 148: 124-35 |
|
GSE23924 |
| Kohsaka, Shinji et al. (2014) A recurrent neomorphic mutation in MYOD1 defines a clinically aggressive subset of embryonal rhabdomyosarcoma associated with PI3K-AKT pathway mutations.; Nat Genet, 46: 595-600 |
|
GSE56078 GSE56079 |
| Kohyanagi, Naoki et al. (2024) PP2A inhibitor SET promotes mTORC1 and Bmi1 signaling through Akt activation and maintains the colony-formation ability of cancer cells.; J Biol Chem, 300: 105584 |
|
GSE235621 |
| Koido, Masaru et al. (2017) Mitochondrial deficiency impairs hypoxic induction of HIF-1 transcriptional activity and retards tumor growth.; Oncotarget, 8: 11841-11854 |
|
GSE80320 |
| Koike, Hiroyuki et al. (2019) Modelling human hepato-biliary-pancreatic organogenesis from the foregut-midgut boundary.; Nature, 574: 112-116 |
|
GSE121830 |
| Koinuma, Daizo et al. (2009) Chromatin immunoprecipitation on microarray analysis of Smad2/3 binding sites reveals roles of ETS1 and TFAP2A in transforming growth factor beta signaling.; Mol Cell Biol, 29: 172-86 |
|
GSE11710 |
| Koizume, Shiro et al. (2015) Lipid starvation and hypoxia synergistically activate ICAM1 and multiple genes in an Sp1-dependent manner to promote the growth of ovarian cancer.; Mol Cancer, 14: 77 |
|
GSE55563 |
| Kojima, Toshio et al. (2010) Gene network analysis to determine the effects of antioxidant treatment in a rat model of neonatal hypoxic-ischemic encephalopathy.; J Mol Neurosci, [no vol.]: [no pages] |
|
GSE18356 |
| Kojima, Toshio et al. (2013) Comprehensive gene expression analysis of cerebral cortices from mature rats after neonatal hypoxic-ischemic brain injury.; J Mol Neurosci, [no vol.]: [no pages] |
|
GSE37777 |
| Kojima, Yoji et al. (2013) The Transcriptional and Functional Properties of Mouse Epiblast Stem Cells Resemble the Anterior Primitive Streak.; Cell Stem Cell, [no vol.]: [no pages] |
|
GSE46227 |
| Kojima, Yoko et al. (2025) The antipsychotic drug thiothixene stimulates macrophages to clear pathogenic cells by inducing arginase 1 and continual efferocytosis.; Sci Signal, 18: eads6584 |
|
GSE286555 |
| Kokkinou, Michelle et al. (2021) Reproducing the dopamine pathophysiology of schizophrenia and approaches to ameliorate it: a translational imaging study with ketamine.; Mol Psychiatry, 26: 2562-2576 |
|
GSE138802 |
| Kokorudz, Caroline et al. (2022) Advanced Maternal Age Differentially Affects Embryonic Tissues with the Most Severe Impact on the Developing Brain.; Cells, 12: [no pages] |
|
GSE209522 |
| Kolabas, Zeynep Ilgin et al. (2023) Distinct molecular profiles of skull bone marrow in health and neurological disorders.; Cell, 186: 3706-3725.e29 |
|
GSE192616.2 |
| Kolaj, Adelaida et al. (2023) The P-body protein 4E-T represses translation to regulate the balance between cell genesis and establishment of the postnatal NSC pool.; Cell Rep, 42: 112242 |
|
GSE224853 |
| Kolbe, Isa et al. (2016) The SCN Clock Governs Circadian Transcription Rhythms in Murine Epididymal White Adipose Tissue.; J Biol Rhythms, 31: 577-587 |
|
GSE81532 |
| Koldobskiy, Michael A et al. (2021) Converging genetic and epigenetic drivers of paediatric acute lymphoblastic leukaemia identified by an information-theoretic analysis.; Nat Biomed Eng, 5: 360-376 |
|
GSE116229.2 |
| Kole, Koen et al. (2017) Transcriptional mapping of the primary somatosensory cortex upon sensory deprivation.; Gigascience, 6: 1-6 |
|
GSE90929 |
| Kõks, S et al. (2009) Wfs1 gene deletion causes growth retardation in mice and interferes with the growth hormone pathway.; Physiol Genomics, 37: 249-59 |
|
GSE15293 |
| Kõks, S et al. (2010) The differential transcriptome and ontology profiles of floating and cumulus granulosa cells in stimulated human antral follicles.; Mol Hum Reprod, 16: 229-40 |
|
GSE18559 |
| Kõks, Sulev et al. (2008) Gene expression profiling reveals upregulation of Tlr4 receptors in Cckb receptor deficient mice.; Behav Brain Res, 188: 62-70 |
|
GSE9594 |
| Kõks, Sulev et al. (2011) Hypothalamic gene expression profile indicates a reduction in G protein signaling in the Wfs1 mutant mice.; Physiol Genomics, 43: 1351-8 |
|
GSE33372 |