ExpressionDataDoubleMatrix |
ExpressionDataMatrixService.getFilteredMatrix(String arrayDesignName,
FilterConfig filterConfig,
Collection<ProcessedExpressionDataVector> dataVectors) |
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ExpressionDataDoubleMatrix |
ExpressionDataMatrixService.getFilteredMatrix(ExpressionExperiment ee,
FilterConfig filterConfig) |
Provide a filtered expression data matrix.
|
ExpressionDataDoubleMatrix |
ExpressionDataMatrixService.getFilteredMatrix(ExpressionExperiment ee,
FilterConfig filterConfig,
Collection<ProcessedExpressionDataVector> dataVectors) |
Provide a filtered expression data matrix.
|
ExpressionDataDoubleMatrix |
ExpressionDataMatrixServiceImpl.getFilteredMatrix(String arrayDesignName,
FilterConfig filterConfig,
Collection<ProcessedExpressionDataVector> dataVectors) |
|
ExpressionDataDoubleMatrix |
ExpressionDataMatrixServiceImpl.getFilteredMatrix(ExpressionExperiment ee,
FilterConfig filterConfig) |
|
ExpressionDataDoubleMatrix |
ExpressionDataMatrixServiceImpl.getFilteredMatrix(ExpressionExperiment ee,
FilterConfig filterConfig,
Collection<ProcessedExpressionDataVector> dataVectors) |
|
Optional<File> |
ExpressionDataFileService.writeOrLocateJSONProcessedExpressionDataFile(ExpressionExperiment ee,
boolean forceWrite,
boolean filtered) |
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Optional<File> |
ExpressionDataFileServiceImpl.writeOrLocateJSONProcessedExpressionDataFile(ExpressionExperiment ee,
boolean forceWrite,
boolean filtered) |
|
Optional<File> |
ExpressionDataFileService.writeOrLocateProcessedDataFile(ExpressionExperiment ee,
boolean forceWrite,
boolean filtered) |
Locate or create a data file containing the 'preferred and masked' expression data matrix, with filtering for low
expression applied (currently supports default settings only).
|
Optional<File> |
ExpressionDataFileServiceImpl.writeOrLocateProcessedDataFile(ExpressionExperiment ee,
boolean forceWrite,
boolean filtered) |
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Optional<File> |
ExpressionDataFileService.writeProcessedExpressionDataFile(ExpressionExperiment ee,
boolean filtered,
String fileName,
boolean compress) |
Create a data file containing the 'preferred and masked' expression data matrix, with filtering for low
expression applied (currently supports default settings only).
|
Optional<File> |
ExpressionDataFileServiceImpl.writeProcessedExpressionDataFile(ExpressionExperiment ee,
boolean filtered,
String fileName,
boolean compress) |
|